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Search of human proteins with 239756674
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756674 PREDICTED: hypothetical protein [Homo sapiens]
(135 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756674 PREDICTED: hypothetical protein [Homo sapiens] 294 2e-80
gi|239751152 PREDICTED: hypothetical protein XP_002347737 [Homo ... 294 2e-80
gi|239745641 PREDICTED: hypothetical protein XP_002344165 [Homo ... 294 2e-80
gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 28 2.3
gi|21703352 myofibrillogenesis regulator 1 isoform 2 [Homo sapiens] 28 2.3
gi|116642887 myofibrillogenesis regulator 1 isoform 1 [Homo sapi... 28 2.3
gi|159032029 SUMO1/sentrin specific peptidase 5 [Homo sapiens] 28 2.9
gi|120952764 mastermind-like domain containing 1 [Homo sapiens] 27 3.8
gi|219555718 synaptonemal complex central element protein 1 isof... 27 3.8
gi|239742245 PREDICTED: hypothetical protein XP_002342464 [Homo ... 27 5.0
gi|126131102 fibrocystin isoform 1 [Homo sapiens] 27 5.0
gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo ... 27 6.6
gi|186659512 calmodulin regulated spectrin-associated protein 1 ... 27 6.6
gi|73747840 LON peptidase N-terminal domain and ring finger 3 is... 27 6.6
gi|157266264 pleckstrin homology-like domain, family B, member 3... 27 6.6
gi|38176300 nestin [Homo sapiens] 26 8.6
gi|56237021 fibrillin 3 precursor [Homo sapiens] 26 8.6
>gi|239756674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 294 bits (752), Expect = 2e-80
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPS 60
MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPS
Sbjct: 1 MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPS 60
Query: 61 LLWDRDLCRFLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGR 120
LLWDRDLCRFLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGR
Sbjct: 61 LLWDRDLCRFLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGR 120
Query: 121 GMLPVEGDCHTATHP 135
GMLPVEGDCHTATHP
Sbjct: 121 GMLPVEGDCHTATHP 135
>gi|239751152 PREDICTED: hypothetical protein XP_002347737 [Homo
sapiens]
Length = 246
Score = 294 bits (752), Expect = 2e-80
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPS 60
MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPS
Sbjct: 112 MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPS 171
Query: 61 LLWDRDLCRFLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGR 120
LLWDRDLCRFLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGR
Sbjct: 172 LLWDRDLCRFLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGR 231
Query: 121 GMLPVEGDCHTATHP 135
GMLPVEGDCHTATHP
Sbjct: 232 GMLPVEGDCHTATHP 246
>gi|239745641 PREDICTED: hypothetical protein XP_002344165 [Homo
sapiens]
Length = 135
Score = 294 bits (752), Expect = 2e-80
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPS 60
MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPS
Sbjct: 1 MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPS 60
Query: 61 LLWDRDLCRFLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGR 120
LLWDRDLCRFLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGR
Sbjct: 61 LLWDRDLCRFLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGR 120
Query: 121 GMLPVEGDCHTATHP 135
GMLPVEGDCHTATHP
Sbjct: 121 GMLPVEGDCHTATHP 135
>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
Length = 4544
Score = 28.1 bits (61), Expect = 2.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 15 FGPCPLVDQPGGTHHSPDVLVRAQH 39
FG PLV+ GG H+ DV++ QH
Sbjct: 4118 FGHSPLVNLTGGLSHASDVVLYHQH 4142
>gi|21703352 myofibrillogenesis regulator 1 isoform 2 [Homo sapiens]
Length = 361
Score = 28.1 bits (61), Expect = 2.3
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 1 MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRA-----QHALGPPRGPTGVDDH 53
M VQR+ +E G CP G S + +R Q ALGP GPTG DD+
Sbjct: 291 MQWVQRQRLERK---GTCP---STLGEERSYNPFLRTHCLALQEALGPGPGPTGDDDY 342
>gi|116642887 myofibrillogenesis regulator 1 isoform 1 [Homo
sapiens]
Length = 385
Score = 28.1 bits (61), Expect = 2.3
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 1 MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRA-----QHALGPPRGPTGVDDH 53
M VQR+ +E G CP G S + +R Q ALGP GPTG DD+
Sbjct: 315 MQWVQRQRLERK---GTCP---STLGEERSYNPFLRTHCLALQEALGPGPGPTGDDDY 366
>gi|159032029 SUMO1/sentrin specific peptidase 5 [Homo sapiens]
Length = 755
Score = 27.7 bits (60), Expect = 2.9
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 73 CSSVDGWCERQQRDPQLPDHRAQ-------ELQVLLAGKDHRALGVADDILQL 118
CSS C D LP+HR+ E +++ G++++ V+DD ++L
Sbjct: 361 CSSPKWECTELIHDIPLPEHRSNTMFISETEREIMTLGQENQTSSVSDDRVKL 413
>gi|120952764 mastermind-like domain containing 1 [Homo sapiens]
Length = 774
Score = 27.3 bits (59), Expect = 3.8
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 81 ERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGRGMLPVEGDCH 130
++QQ+ Q PDH + LQ ++ VA D + LP +G CH
Sbjct: 598 QQQQQQQQQPDHSSFLLQQMMQQPQRFQRSVASDSMP----ALPRQGCCH 643
>gi|219555718 synaptonemal complex central element protein 1 isoform
4 [Homo sapiens]
Length = 351
Score = 27.3 bits (59), Expect = 3.8
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 5 QREHVEDHVVFGPCPLV-DQPGGTHHS-PDVLVRAQHALGPPRGPTGVDD 52
Q E V P PL ++PG H + PDVL+ + L P P G +
Sbjct: 297 QEEEAGPGDVASPKPLKGERPGAAHQAGPDVLIGQEDTLHPDLSPRGFQE 346
>gi|239742245 PREDICTED: hypothetical protein XP_002342464 [Homo
sapiens]
Length = 424
Score = 26.9 bits (58), Expect = 5.0
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 32/108 (29%)
Query: 17 PCPLVDQPGGT----HHSPDVLVRAQ-HALGPPRGPTGVDDHGALVPPSLLW-----DRD 66
PCP QP +P LV A+ H+L PR P G P SL W +D
Sbjct: 174 PCPCPPQPNQLAPQLSSAPAQLVWAETHSLALPR-PNG--------PESLTWVIFRKSKD 224
Query: 67 ------------LCRFLYCSSVDGWCERQQRDPQLPDHRAQELQVLLA 102
L R L+ S G CER + P+ P ++ +LLA
Sbjct: 225 GRVHLASSSRLRLRRLLFPLSTQG-CERHRSSPRRPPSAGVDVGLLLA 271
>gi|126131102 fibrocystin isoform 1 [Homo sapiens]
Length = 4074
Score = 26.9 bits (58), Expect = 5.0
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 34 LVRAQHALGPPRGPTGVDDHGALVPPSLLWDRDLCRFLYCSSVDGWCERQQRDPQLPDHR 93
+VR + A P G TG+ HG + P + +Y W E Q++ L
Sbjct: 3959 IVREEEAAVPAPGTTGITSHGHICAPGA-----PAQQVYLQETGNWKEGQEQ--LLRYQL 4011
Query: 94 AQELQVLLAGKDHR 107
A + Q+LL D R
Sbjct: 4012 AGQNQLLLLCPDFR 4025
>gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo
sapiens]
Length = 2923
Score = 26.6 bits (57), Expect = 6.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 34 LVRAQHALGPPRGPTGVDDHGAL 56
L+R + AL P +GP G+ D G+L
Sbjct: 2683 LLREESALNPGQGPPGLGDPGSL 2705
>gi|186659512 calmodulin regulated spectrin-associated protein 1 [Homo
sapiens]
Length = 1602
Score = 26.6 bits (57), Expect = 6.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 19 PLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDH 53
P V PG ++S D V+A P PTGV H
Sbjct: 1053 PTVPVPGSKNNSQDHKVKAPVHFVEPLSPTGVAGH 1087
>gi|73747840 LON peptidase N-terminal domain and ring finger 3
isoform 1 [Homo sapiens]
Length = 759
Score = 26.6 bits (57), Expect = 6.6
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 67 LCRFLYCSSVDG-----WCERQQRDPQLPDHRAQE 96
L FLYC S+DG CE Q+ + +LP +QE
Sbjct: 331 LREFLYCVSLDGKNKRARCEAQRDNLELPHCSSQE 365
>gi|157266264 pleckstrin homology-like domain, family B, member 3
[Homo sapiens]
Length = 640
Score = 26.6 bits (57), Expect = 6.6
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 81 ERQQRDPQLPDHRAQELQVLLA-----GKDHRALGVADDILQLGRGM 122
+R PQ+PD + QELQ +A HR + + + LG M
Sbjct: 251 DRDSPGPQVPDPKVQELQASMAQHRRGALQHRIRVLEEQLKSLGEQM 297
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 26.2 bits (56), Expect = 8.6
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 12/50 (24%)
Query: 19 PLVDQ---PGGTHHSPDVLVRAQHAL---------GPPRGPTGVDDHGAL 56
PLV+ PGG SP+V++ ++ A+ GP +G G+ D G L
Sbjct: 1065 PLVEDDVAPGGDQASPEVMLGSEPAMGESAAGAEPGPGQGVGGLGDPGHL 1114
>gi|56237021 fibrillin 3 precursor [Homo sapiens]
Length = 2809
Score = 26.2 bits (56), Expect = 8.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 24 PGGTHHSPDVLVRAQHALGPPRGPTGVDDHGA 55
PG P +L + +GPP GP ++ HG+
Sbjct: 354 PGHPGLFPGLLGFGSNGMGPPLGPARLNPHGS 385
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.142 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,936,021
Number of Sequences: 37866
Number of extensions: 357520
Number of successful extensions: 658
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 17
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.