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Search of human proteins with 239756609
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens]
(178 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens] 370 e-103
gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens] 370 e-103
gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens] 370 e-103
gi|24308326 BR serine/threonine kinase 1 [Homo sapiens] 45 3e-05
gi|239753500 PREDICTED: hypothetical protein [Homo sapiens] 41 5e-04
gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo ... 40 8e-04
gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo ... 40 8e-04
gi|57864582 hornerin [Homo sapiens] 39 0.002
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 39 0.002
gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens] 38 0.004
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 38 0.005
gi|94536852 transmembrane cochlear-expressed protein 2 [Homo sap... 37 0.007
gi|167234419 thyroid hormone receptor associated protein 3 [Homo... 37 0.007
gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens] 37 0.009
gi|55750053 atrophin-1 [Homo sapiens] 37 0.012
gi|55750041 atrophin-1 [Homo sapiens] 37 0.012
gi|239741968 PREDICTED: hypothetical protein [Homo sapiens] 36 0.015
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 36 0.015
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 36 0.015
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 36 0.020
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 36 0.020
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 36 0.020
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 36 0.020
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 36 0.020
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 36 0.020
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 36 0.020
gi|169171580 PREDICTED: hypothetical protein [Homo sapiens] 36 0.020
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens] 36 0.020
gi|239753545 PREDICTED: similar to hCG2041452 [Homo sapiens] 36 0.020
gi|113419324 PREDICTED: hypothetical protein [Homo sapiens] 36 0.020
>gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens]
Length = 178
Score = 370 bits (949), Expect = e-103
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG 60
MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG
Sbjct: 1 MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG 60
Query: 61 SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA 120
SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA
Sbjct: 61 SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA 120
Query: 121 DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL 178
DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL
Sbjct: 121 DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL 178
>gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens]
Length = 178
Score = 370 bits (949), Expect = e-103
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG 60
MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG
Sbjct: 1 MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG 60
Query: 61 SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA 120
SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA
Sbjct: 61 SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA 120
Query: 121 DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL 178
DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL
Sbjct: 121 DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL 178
>gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens]
Length = 178
Score = 370 bits (949), Expect = e-103
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG 60
MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG
Sbjct: 1 MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG 60
Query: 61 SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA 120
SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA
Sbjct: 61 SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA 120
Query: 121 DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL 178
DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL
Sbjct: 121 DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL 178
>gi|24308326 BR serine/threonine kinase 1 [Homo sapiens]
Length = 778
Score = 45.1 bits (105), Expect = 3e-05
Identities = 45/142 (31%), Positives = 54/142 (38%), Gaps = 10/142 (7%)
Query: 6 SSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAP---PASKVTSASLK-----TA 57
+ AG G +PT R E H R S A G S+P P S V S S + A
Sbjct: 406 TDAGGGGSPVPTRRALEMAQHSQRSRSVSGASTGLSSSPLSSPRSPVFSFSPEPGAGDEA 465
Query: 58 RHGSEAAHCSQQTCARGQRVKEAGSRRARPCTPHT--AGSSRAFRDSLGPRERSPALSPT 115
R G +Q +RG R AG + P T G + R S G SP +P
Sbjct: 466 RGGGSPTSKTQTLPSRGPRGGGAGEQPPPPSARSTPLPGPPGSPRSSGGTPLHSPLHTPR 525
Query: 116 PLPHADPARPPGSGPGRGHGEA 137
P P P PG G G A
Sbjct: 526 ASPTGTPGTTPPPSPGGGVGGA 547
>gi|239753500 PREDICTED: hypothetical protein [Homo sapiens]
Length = 213
Score = 41.2 bits (95), Expect = 5e-04
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 25/168 (14%)
Query: 11 SGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEAAHCSQQT 70
+ G P+ R SHP + P + PA++ + + A
Sbjct: 6 ASGASPSPRSSPARSHPPAPLPFPERLPRPAAKEPAARTPARQVFPA------------- 52
Query: 71 CARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGP 130
A R A AR TP A S L P R+P P P P PAR PG+ P
Sbjct: 53 AASAGREGSAAPDGARGSTPGLAASRE-----LSPPPRAPRTVPAPHPRLSPARRPGAEP 107
Query: 131 GRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAAT-AGRCSAQLLP 177
+++ + REP RE ++A T +G C + P
Sbjct: 108 EN------KFVALRGSHKTRNREPGMLREAFKSAPPTGSGYCPLSVRP 149
>gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo
sapiens]
Length = 213
Score = 40.4 bits (93), Expect = 8e-04
Identities = 42/168 (25%), Positives = 59/168 (35%), Gaps = 25/168 (14%)
Query: 11 SGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEAAHCSQQT 70
+ G P R SHP + P + PA++ + + A
Sbjct: 6 ASGASPRPRSSPARSHPPAPLPFPERLPRPAAKEPAARTPARQVFPA------------- 52
Query: 71 CARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGP 130
A R A AR TP A S L P R+P P P P PAR PG+ P
Sbjct: 53 AASAGREGSAAPDGARGSTPGLAASRE-----LSPPPRAPRTVPAPHPRLSPARRPGAEP 107
Query: 131 GRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAAT-AGRCSAQLLP 177
+++ + REP RE ++A T +G C + P
Sbjct: 108 EN------KFVALRGSHKTRNREPGMLREAFKSAPPTGSGYCPLSVRP 149
>gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo
sapiens]
Length = 213
Score = 40.4 bits (93), Expect = 8e-04
Identities = 42/168 (25%), Positives = 59/168 (35%), Gaps = 25/168 (14%)
Query: 11 SGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEAAHCSQQT 70
+ G P R SHP + P + PA++ + + A
Sbjct: 6 ASGASPRPRSSPARSHPPAPLPFPERLPRPAAKEPAARTPARQVFPA------------- 52
Query: 71 CARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGP 130
A R A AR TP A S L P R+P P P P PAR PG+ P
Sbjct: 53 AASAGREGSAAPDGARGSTPGLAASRE-----LSPPPRAPRTVPAPHPRLSPARRPGAEP 107
Query: 131 GRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAAT-AGRCSAQLLP 177
+++ + REP RE ++A T +G C + P
Sbjct: 108 EN------KFVALRGSHKTRNREPGMLREAFKSAPPTGSGYCPLSVRP 149
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 39.3 bits (90), Expect = 0.002
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 7 SAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEAAHC 66
S +SG SR G+ R+GSSA S S + SL +RHGS +
Sbjct: 485 SGHSSGHGQHGSRSGQS---SRGERQGSSAGSSSSYGQHGSG-SRQSLGHSRHGSGSGQS 540
Query: 67 SQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPP 126
+ R E+GSR++ PH GS R+ S GP E S + L H +
Sbjct: 541 PSPSRGR----HESGSRQSSSYGPHGYGSGRS--SSRGPYESGSGHS-SGLGHQESRSGQ 593
Query: 127 GSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSA 173
SG G+ HG + + + ++ + C + G AT+G+ S+
Sbjct: 594 SSGYGQ-HGSSSGHSSTHGQHGSTSGQSSSCGQHG----ATSGQSSS 635
Score = 35.4 bits (80), Expect = 0.026
Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 21/142 (14%)
Query: 5 HSSAGASGGELPT-SRLGEGLSHPASR-RRGSSAWPGSCSAPPASKVTSASLKTARHGSE 62
H G+ G+ P+ R G GL H +S + GS + S P S++ +S+ +H S
Sbjct: 2642 HGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSGSGRSSSRGPYESRLGHSSV-FGQHESG 2700
Query: 63 AAHCSQQT---------CARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALS 113
+ H S + C++GQ GS + T GSS S G R + S
Sbjct: 2701 SGHSSAYSQHGSGSGHFCSQGQH----GSTSGQSSTFDQEGSSTGQSSSYGHRGSGSSQS 2756
Query: 114 PTPLPHADPARPPGSGPGRGHG 135
H GSG HG
Sbjct: 2757 SGYGRHG-----AGSGQSLSHG 2773
Score = 34.7 bits (78), Expect = 0.044
Identities = 40/148 (27%), Positives = 54/148 (36%), Gaps = 16/148 (10%)
Query: 5 HSSAGASGGELPT-SRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEA 63
H G+ G P+ R G GL H +S + S S S P + S +H S +
Sbjct: 1232 HGRQGSGSGHSPSRGRHGSGLGHSSSHGQHGSGSGRSSSRGPYESRSGHSSVFGQHESGS 1291
Query: 64 AHCSQQT---------CARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSP 114
H S + C++GQ GS + T GSS S G R + S
Sbjct: 1292 GHSSAYSQHGSGSGHFCSQGQH----GSTSGQSSTFDQEGSSTGQSSSYGHRGSGSSQSS 1347
Query: 115 TPLPH-ADPARPPGSG-PGRGHGEAVEY 140
H A + P G G G G + Y
Sbjct: 1348 GYGRHGAGSGQSPSRGRHGSGSGHSSSY 1375
Score = 34.3 bits (77), Expect = 0.058
Identities = 37/142 (26%), Positives = 52/142 (36%), Gaps = 18/142 (12%)
Query: 5 HSSAGASGGELPT-SRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEA 63
H G+ G+ P+ R G GL H +S + S S S P + S +H S +
Sbjct: 1702 HGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSGSGRSSSRGPYESRSGHSSVFGQHESGS 1761
Query: 64 AHCSQQT---------CARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSP 114
H S + C++GQ GS + T GSS S G + S
Sbjct: 1762 GHSSAYSQHGSGSGHFCSQGQH----GSTSGQSSTFDQEGSSTGQSSSHGQHGSGSSQSS 1817
Query: 115 TPLPHADPARPPGSGPGRG-HG 135
+ + G P RG HG
Sbjct: 1818 S---YGQQGSGSGQSPSRGRHG 1836
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 38.9 bits (89), Expect = 0.002
Identities = 37/122 (30%), Positives = 47/122 (38%), Gaps = 17/122 (13%)
Query: 5 HSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEAA 64
HS+ S G GL PASR SSA P S+P S ++ A A
Sbjct: 206 HSTTEPSPAARRRPSAGGGLQRPASRSLSSSATP--LSSPARSGPSARGTPRA-----PA 258
Query: 65 HCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPAR 124
H SQ K G + RP P + +LGP SP +P+P P+
Sbjct: 259 HPSQP--------KPKGLQALRP--PQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSA 308
Query: 125 PP 126
PP
Sbjct: 309 PP 310
Score = 32.7 bits (73), Expect = 0.17
Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 11/133 (8%)
Query: 44 PPASKVTSASLK---TARHGSEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFR 100
PP S+ S++L A H S A ++ R ++G +P A
Sbjct: 574 PPPSRSPSSTLSGPDLAGHSSSATSTPEEL-----RGYDSGPEGGAAASPPPDAELAACH 628
Query: 101 DSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRER 160
+ R +P L+ P A PP +GPG G Y + E E +T P G +
Sbjct: 629 PAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIY--ETEGPESATPAP-GALDP 685
Query: 161 GEAAAATAGRCSA 173
G + + G+ +A
Sbjct: 686 GPSPGTSGGKAAA 698
>gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens]
Length = 951
Score = 38.1 bits (87), Expect = 0.004
Identities = 39/157 (24%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 26 HPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEAAHCSQQ--------TCARGQRV 77
H +S+ R S S P A + S +R AH ++ T R R
Sbjct: 775 HSSSKSRSRSHSKAKHSLPSAYRTVRRSRSRSRSPRRRAHSPERRREERSVPTAYRVSRS 834
Query: 78 KEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEA 137
A +R R +PH R R + RS ++SP+ PA P H +
Sbjct: 835 PGASRKRTRSRSPHEKKKKRRSRSRTKSKARSQSVSPSKQAAPRPAAPAAHS---AHSAS 891
Query: 138 VEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQ 174
V +E R S G + EA ++A S Q
Sbjct: 892 VSPVES---RGSSQERSRGVSQEKEAQISSAIVSSVQ 925
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 37.7 bits (86), Expect = 0.005
Identities = 47/179 (26%), Positives = 54/179 (30%), Gaps = 49/179 (27%)
Query: 28 ASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEAAHCSQQTCARGQRVKEAGSRRARP 87
A+ + G GS P A S S S C G+R A RR R
Sbjct: 6 AATKCGEEPRSGSRRLPKAEGDKSGSAGAPSKNSSRLGGRPCMCTAGRRPNRASGRRRRS 65
Query: 88 CTP-----------------HTAGSSRAFRDSLGP-----------------RERSPALS 113
C+P AG R S P R PAL
Sbjct: 66 CSPAPTWPPLCCYPQSRPTASAAGPGACMRASGRPHGNTTASTAPPRHPRPRRPGGPALR 125
Query: 114 PTPLPHADPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCS 172
PTP P A PA PP S ++ R R R P R RG A A C+
Sbjct: 126 PTPRPCAGPAPPPAS--------------RDCRCRRPRRWPRAGR-RGRRAGACKPSCA 169
Score = 27.3 bits (59), Expect = 7.1
Identities = 32/107 (29%), Positives = 40/107 (37%), Gaps = 13/107 (12%)
Query: 27 PASRRRGSSAWPGSCSAPPASKVTSA------SLKTARHGSEAAHCSQQ---TCARGQRV 77
P + RRG A G+C A SA S +T+ GS A + TCA
Sbjct: 152 PRAGRRGRRA--GACKPSCAGAAWSARGAPLCSYRTSCAGSCGARTAPTPAPTCASPSAA 209
Query: 78 KEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPAR 124
+ RR R C+ T S A GP + A P A P R
Sbjct: 210 ASSCCRRRRACSSPTTAWSGAC--GAGPTAATAAQPGKPRSAAAPGR 254
>gi|94536852 transmembrane cochlear-expressed protein 2 [Homo
sapiens]
Length = 906
Score = 37.4 bits (85), Expect = 0.007
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 56 TARHGSEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPT 115
TAR + S + + Q KE TP +A S+A S + S T
Sbjct: 811 TARDSEDTPKSSSKNATQLQLTKEE-------TTPPSASQSQAMDKKAQGPGTSNSASRT 863
Query: 116 PLP---HADPARPPGSGPGRGHGEAVEYLEKEERRERSTREPH 155
LP H +RPPG GP GH + + + + + R PH
Sbjct: 864 TLPASGHLPISRPPGIGPDSGHAPSQTHPWRSASGKSAQRPPH 906
>gi|167234419 thyroid hormone receptor associated protein 3 [Homo
sapiens]
Length = 955
Score = 37.4 bits (85), Expect = 0.007
Identities = 43/137 (31%), Positives = 54/137 (39%), Gaps = 26/137 (18%)
Query: 18 SRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTAR----HGSEAA------HCS 67
SR + S SRR SS + S +SK SA K + S+AA
Sbjct: 143 SRNSDKSSSDRSRRSSSSRSSSNHSRVESSKRKSAKEKKSSSKDSRPSQAAGDNQGDEAK 202
Query: 68 QQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDS----LGPRERSPAL----------- 112
+QT + G S ++P T G+ A R S L PRERSPAL
Sbjct: 203 EQTFSGGTSQDTKASESSKPWPDATYGTGSASRASAVSELSPRERSPALKSPLQSVVVRR 262
Query: 113 -SPTPLPHADPARPPGS 128
SP P P P+ P S
Sbjct: 263 RSPRPSPVPKPSPPLSS 279
>gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens]
Length = 1586
Score = 37.0 bits (84), Expect = 0.009
Identities = 44/148 (29%), Positives = 50/148 (33%), Gaps = 20/148 (13%)
Query: 6 SSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAP----PASKVTSASLKTARHGS 61
SS SR G+S S RR S A P P A S +R S
Sbjct: 808 SSTSTVSSAYTVSRRSSGISPYFSSRRSSEASPLGAGRPHNASSADSYDPISTDASRRSS 867
Query: 62 EAAHCS------QQTCAR--GQRVKEAGSRRARPCTPHTAGSSRAFRDSLG----PRERS 109
EA+ CS T A+ R K A + P TP + R L P
Sbjct: 868 EASQCSGGSGLLNLTPAQQYSLRAKYAAATGGPPPTPLPGLERMSLRTRLALLDAPERTL 927
Query: 110 PALSPTPLPHADPARPPGSGPGRGHGEA 137
PA P PL R GP GHG A
Sbjct: 928 PAGCPRPLG----PRRGSDGPTYGHGHA 951
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 36.6 bits (83), Expect = 0.012
Identities = 43/176 (24%), Positives = 65/176 (36%), Gaps = 29/176 (16%)
Query: 3 PAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSE 62
P SS+ +S TS+ SHP S +G P P +SA+L T
Sbjct: 567 PVSSSSNSSSS---TSQGSYPCSHP-SPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVA 622
Query: 63 AAHCSQQTCAR------GQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRER-------- 108
++ +T + G+R G+ + + GS +FR P R
Sbjct: 623 SSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSPPAGP 682
Query: 109 ------SPALSPTPLPHADPA-----RPPGSGPGRGHGEAVEYLEKEERRERSTRE 153
SP + P PLP A P+ PP + P G + +++E E T E
Sbjct: 683 GTFKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASGPPLSATQIKQEPAEEYETPE 738
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 36.6 bits (83), Expect = 0.012
Identities = 43/176 (24%), Positives = 65/176 (36%), Gaps = 29/176 (16%)
Query: 3 PAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSE 62
P SS+ +S TS+ SHP S +G P P +SA+L T
Sbjct: 567 PVSSSSNSSSS---TSQGSYPCSHP-SPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVA 622
Query: 63 AAHCSQQTCAR------GQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRER-------- 108
++ +T + G+R G+ + + GS +FR P R
Sbjct: 623 SSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSPPAGP 682
Query: 109 ------SPALSPTPLPHADPA-----RPPGSGPGRGHGEAVEYLEKEERRERSTRE 153
SP + P PLP A P+ PP + P G + +++E E T E
Sbjct: 683 GTFKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASGPPLSATQIKQEPAEEYETPE 738
>gi|239741968 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 36.2 bits (82), Expect = 0.015
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 23/120 (19%)
Query: 39 GSCSAPPASKVTSASLKTARHGSEAAHCSQ-----QTCARGQRVKE---AGSRRARPCTP 90
G+ A PA + + R S+ A C++ + A + V+ +G+ RARP +P
Sbjct: 119 GAAGASPAGARSHPGRASRRGASDRARCARGLGGPRVAAASELVRRGLASGAARARPASP 178
Query: 91 HTA-------GSSRAFRDSL--------GPRERSPALSPTPLPHADPARPPGSGPGRGHG 135
A G+S A D+ P R PLP + PAR PG G R G
Sbjct: 179 APARLLPLAVGASAAAGDTRRTEARAEPSPSRRRRRRCCAPLPGSLPARRPGCGGRRAGG 238
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 36.2 bits (82), Expect = 0.015
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 85 ARPCTPHTAGSSRAFRD---SLGPRERSPALSPTPLPHA---DPARPPGSGPGRGHGEAV 138
AR + ++ SS + D PR R PA P P P P RPP S + V
Sbjct: 251 ARSASSSSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKPKPERPPSSSSSDSDSDEV 310
Query: 139 EYLEKEERRERSTREPHGCRERGE 162
+ + + +RR+ + R R R E
Sbjct: 311 DRISEWKRRDEARRRELEARRRRE 334
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 36.2 bits (82), Expect = 0.015
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 85 ARPCTPHTAGSSRAFRD---SLGPRERSPALSPTPLPHA---DPARPPGSGPGRGHGEAV 138
AR + ++ SS + D PR R PA P P P P RPP S + V
Sbjct: 251 ARSASSSSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKPKPERPPSSSSSDSDSDEV 310
Query: 139 EYLEKEERRERSTREPHGCRERGE 162
+ + + +RR+ + R R R E
Sbjct: 311 DRISEWKRRDEARRRELEARRRRE 334
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 35.8 bits (81), Expect = 0.020
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query: 27 PASRRRGSSAWPGSCSAPPASKVTSA---SLKTARHGSEAAHCSQQTCARGQRVKEAGSR 83
PAS G S+ P S P + + A +L G + +Q R Q +
Sbjct: 135 PAS---GPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLA 191
Query: 84 RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEA 137
R +P H + + R G +++ P L P + P PG GPG G G A
Sbjct: 192 RGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 35.8 bits (81), Expect = 0.020
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query: 27 PASRRRGSSAWPGSCSAPPASKVTSA---SLKTARHGSEAAHCSQQTCARGQRVKEAGSR 83
PAS G S+ P S P + + A +L G + +Q R Q +
Sbjct: 135 PAS---GPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLA 191
Query: 84 RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEA 137
R +P H + + R G +++ P L P + P PG GPG G G A
Sbjct: 192 RGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 35.8 bits (81), Expect = 0.020
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query: 27 PASRRRGSSAWPGSCSAPPASKVTSA---SLKTARHGSEAAHCSQQTCARGQRVKEAGSR 83
PAS G S+ P S P + + A +L G + +Q R Q +
Sbjct: 135 PAS---GPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLA 191
Query: 84 RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEA 137
R +P H + + R G +++ P L P + P PG GPG G G A
Sbjct: 192 RGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 35.8 bits (81), Expect = 0.020
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query: 27 PASRRRGSSAWPGSCSAPPASKVTSA---SLKTARHGSEAAHCSQQTCARGQRVKEAGSR 83
PAS G S+ P S P + + A +L G + +Q R Q +
Sbjct: 135 PAS---GPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLA 191
Query: 84 RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEA 137
R +P H + + R G +++ P L P + P PG GPG G G A
Sbjct: 192 RGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 35.8 bits (81), Expect = 0.020
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query: 27 PASRRRGSSAWPGSCSAPPASKVTSA---SLKTARHGSEAAHCSQQTCARGQRVKEAGSR 83
PAS G S+ P S P + + A +L G + +Q R Q +
Sbjct: 135 PAS---GPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLA 191
Query: 84 RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEA 137
R +P H + + R G +++ P L P + P PG GPG G G A
Sbjct: 192 RGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 35.8 bits (81), Expect = 0.020
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query: 27 PASRRRGSSAWPGSCSAPPASKVTSA---SLKTARHGSEAAHCSQQTCARGQRVKEAGSR 83
PAS G S+ P S P + + A +L G + +Q R Q +
Sbjct: 135 PAS---GPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLA 191
Query: 84 RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEA 137
R +P H + + R G +++ P L P + P PG GPG G G A
Sbjct: 192 RGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 35.8 bits (81), Expect = 0.020
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query: 27 PASRRRGSSAWPGSCSAPPASKVTSA---SLKTARHGSEAAHCSQQTCARGQRVKEAGSR 83
PAS G S+ P S P + + A +L G + +Q R Q +
Sbjct: 135 PAS---GPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLA 191
Query: 84 RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEA 137
R +P H + + R G +++ P L P + P PG GPG G G A
Sbjct: 192 RGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245
>gi|169171580 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 35.8 bits (81), Expect = 0.020
Identities = 42/147 (28%), Positives = 51/147 (34%), Gaps = 22/147 (14%)
Query: 47 SKVTSASLKTARHGSEAAHCSQQTCARGQRVKEAGSRRARPC-------TPHTAGSSRAF 99
SKVT K +R G QQ RG+R + ARP P ++ F
Sbjct: 46 SKVTQLPDKESRDG-------QQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGF 98
Query: 100 RDSLGPRERSPALSPTPLPHAD---PARPPG----SGPGRGHGEAVEYLEKEERRERSTR 152
P P+ PT H D P R P SGP R + E R RS R
Sbjct: 99 LSFRSPGAAVPSCFPTAAAHRDLGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPR 158
Query: 153 EPHG-CRERGEAAAATAGRCSAQLLPL 178
P G EA C+ L P+
Sbjct: 159 RPRGSIAAAREALRELLKPCALHLAPV 185
>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 35.8 bits (81), Expect = 0.020
Identities = 50/196 (25%), Positives = 65/196 (33%), Gaps = 26/196 (13%)
Query: 1 MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSS-----------AWPGSCSAPPASKV 49
+W S + P SR L P SR R S A PGS PP
Sbjct: 18 VWKPSSLIHPARSNQPPSRTCPPLPGPPSRSRSPSSRLKLPADPPRALPGSPEPPPPPPP 77
Query: 50 TSASLKTARHGSEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRER- 108
+ + AR + H + +R G++ RP AG+ PR R
Sbjct: 78 AAPHVLGARVAAGPTHRLSASHSRVSSRGPVGTKPKRPGQGRRAGARMRSAAPASPRARA 137
Query: 109 ----SPALSPTPLPHADPARPPG-----SGPGRGHGEAVEYLEKEERRERSTREPHGCRE 159
S SP P P P+R S PG H E + R R R G
Sbjct: 138 ARAISNQSSPPPPP---PSRARSRSLRLSAPGSRHD--AEKASERNRLRRKKRLVLGRGG 192
Query: 160 RGEAAAATAGRCSAQL 175
GE A A C+ ++
Sbjct: 193 GGECAHAHEWECARRM 208
>gi|239753545 PREDICTED: similar to hCG2041452 [Homo sapiens]
Length = 410
Score = 35.8 bits (81), Expect = 0.020
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 9 GASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPA-SKVTSAS 53
G SGG + T R G G + PA RRGS + PG P S++T AS
Sbjct: 50 GGSGGAVGTGRRGGGAARPAPVRRGSPSSPGEPYRPEEDSRMTPAS 95
>gi|113419324 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 35.8 bits (81), Expect = 0.020
Identities = 42/147 (28%), Positives = 51/147 (34%), Gaps = 22/147 (14%)
Query: 47 SKVTSASLKTARHGSEAAHCSQQTCARGQRVKEAGSRRARPC-------TPHTAGSSRAF 99
SKVT K +R G QQ RG+R + ARP P ++ F
Sbjct: 46 SKVTQLPDKESRDG-------QQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGF 98
Query: 100 RDSLGPRERSPALSPTPLPHAD---PARPPG----SGPGRGHGEAVEYLEKEERRERSTR 152
P P+ PT H D P R P SGP R + E R RS R
Sbjct: 99 LSFRSPGAAVPSCFPTAAAHRDLGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPR 158
Query: 153 EPHG-CRERGEAAAATAGRCSAQLLPL 178
P G EA C+ L P+
Sbjct: 159 RPRGSIAAAREALRELLKPCALHLAPV 185
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.126 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,108,498
Number of Sequences: 37866
Number of extensions: 545535
Number of successful extensions: 4462
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 502
Number of HSP's that attempted gapping in prelim test: 3885
Number of HSP's gapped (non-prelim): 1005
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.