Guide to the Human Genome
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Search of human proteins with 239756537

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756537 PREDICTED: hypothetical protein [Homo sapiens]
         (130 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756537 PREDICTED: hypothetical protein [Homo sapiens]           268   9e-73
gi|239745490 PREDICTED: hypothetical protein XP_002343505 [Homo ...   268   9e-73
gi|50345997 E1A binding protein p300 [Homo sapiens]                    31   0.32 
gi|119395729 cathepsin A isoform a precursor [Homo sapiens]            30   0.41 
gi|59823631 G protein-coupled receptor 125 [Homo sapiens]              29   0.92 
gi|212720889 bestrophin 1 isoform 2 [Homo sapiens]                     29   1.2  
gi|239755827 PREDICTED: hypothetical protein [Homo sapiens]            28   1.6  
gi|239750328 PREDICTED: hypothetical protein XP_002347384 [Homo ...    28   1.6  
gi|239744634 PREDICTED: hypothetical protein XP_002343228 [Homo ...    28   1.6  
gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens]             28   1.6  
gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens]             28   1.6  
gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens]             28   1.6  
gi|117606357 anterior pharynx defective 1 homolog A isoform 2 [H...    28   2.1  
gi|11321593 insulin-like growth factor binding protein 6 [Homo s...    27   3.5  
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]                      27   3.5  
gi|239755473 PREDICTED: hypothetical protein [Homo sapiens]            27   4.6  
gi|239749968 PREDICTED: hypothetical protein XP_002347245 [Homo ...    27   4.6  
gi|239744278 PREDICTED: hypothetical protein XP_002343110 [Homo ...    27   4.6  
gi|34577055 F-box only protein 30 [Homo sapiens]                       27   4.6  
gi|4505737 complement factor properdin precursor [Homo sapiens]        27   6.0  
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]       27   6.0  
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho...    27   6.0  
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho...    27   6.0  
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho...    27   6.0  
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho...    27   6.0  
gi|36951034 G protein-coupled receptor 78 [Homo sapiens]               27   6.0  
gi|223671861 complement factor properdin precursor [Homo sapiens]      27   6.0  
gi|116235482 glycosyltransferase-like 1B [Homo sapiens]                27   6.0  
gi|38788260 bromodomain PHD finger transcription factor isoform ...    26   7.8  
gi|38788274 bromodomain PHD finger transcription factor isoform ...    26   7.8  

>gi|239756537 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 130

 Score =  268 bits (685), Expect = 9e-73
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MGHPQSSTFFQIPGQQGSHPNPNLFHLLLQGVQGVGPGQQLLQAAQLPLLLLTVLLLLLS 60
           MGHPQSSTFFQIPGQQGSHPNPNLFHLLLQGVQGVGPGQQLLQAAQLPLLLLTVLLLLLS
Sbjct: 1   MGHPQSSTFFQIPGQQGSHPNPNLFHLLLQGVQGVGPGQQLLQAAQLPLLLLTVLLLLLS 60

Query: 61  LLLQGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHGFHFCQGAC 120
           LLLQGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHGFHFCQGAC
Sbjct: 61  LLLQGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHGFHFCQGAC 120

Query: 121 QLSPKPAELT 130
           QLSPKPAELT
Sbjct: 121 QLSPKPAELT 130


>gi|239745490 PREDICTED: hypothetical protein XP_002343505 [Homo
           sapiens]
          Length = 130

 Score =  268 bits (685), Expect = 9e-73
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MGHPQSSTFFQIPGQQGSHPNPNLFHLLLQGVQGVGPGQQLLQAAQLPLLLLTVLLLLLS 60
           MGHPQSSTFFQIPGQQGSHPNPNLFHLLLQGVQGVGPGQQLLQAAQLPLLLLTVLLLLLS
Sbjct: 1   MGHPQSSTFFQIPGQQGSHPNPNLFHLLLQGVQGVGPGQQLLQAAQLPLLLLTVLLLLLS 60

Query: 61  LLLQGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHGFHFCQGAC 120
           LLLQGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHGFHFCQGAC
Sbjct: 61  LLLQGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHGFHFCQGAC 120

Query: 121 QLSPKPAELT 130
           QLSPKPAELT
Sbjct: 121 QLSPKPAELT 130


>gi|50345997 E1A binding protein p300 [Homo sapiens]
          Length = 2414

 Score = 30.8 bits (68), Expect = 0.32
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 2    GHPQSSTFFQ---IPGQQGSHPNPNLFHL--LLQGVQGVG-PGQQLLQAAQLPL 49
            G PQ     Q   +PGQQG H NP + ++  +  GVQ  G P QQ  Q  Q P+
Sbjct: 2105 GMPQGQPGLQPPTMPGQQGVHSNPAMQNMNPMQAGVQRAGLPQQQPQQQLQPPM 2158


>gi|119395729 cathepsin A isoform a precursor [Homo sapiens]
          Length = 498

 Score = 30.4 bits (67), Expect = 0.41
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 7/67 (10%)

Query: 31 GVQGVGPGQQLLQAAQLPLLLLTVLLLLLSLLLQGGDLGFIAADGVCQDGLQRGHLLLAL 90
          G QG G G ++++AA  PL LL +LLL   LL+     G  A D   QD +QR   L   
Sbjct: 10 GEQGRG-GAEMIRAAPPPLFLLLLLLL---LLVSWASRGEAAPD---QDEIQRLPGLAKQ 62

Query: 91 PLHRSHS 97
          P  R +S
Sbjct: 63 PSFRQYS 69


>gi|59823631 G protein-coupled receptor 125 [Homo sapiens]
          Length = 1321

 Score = 29.3 bits (64), Expect = 0.92
 Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 45 AQLPLLLLTVLLLLLSLLLQGGDLGFIAADGVCQ-DGLQRG 84
          AQ PLLL   LL LL+LL  GG  G  A    C+ DG  RG
Sbjct: 11 AQPPLLLPLSLLALLALLGGGGGGGAAALPAGCKHDGRPRG 51


>gi|212720889 bestrophin 1 isoform 2 [Homo sapiens]
          Length = 604

 Score = 28.9 bits (63), Expect = 1.2
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 81  LQRGHLLLALPLHRSHSLGLRALAHLCHSLHGFHFCQGACQLSP 124
           L +GH +   P   S +L L  L    H+  GFH CQ    L P
Sbjct: 525 LNQGHCIALCPTPASLALSLPFL----HNFLGFHHCQSTLDLRP 564


>gi|239755827 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 146

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 32  VQGVGPGQQLLQAAQLPLLLLTVLLLLLSLLLQGGDLGFIAADGVCQ--DGLQR---GHL 86
           + G+      L+  QL  L +   LLL   L Q    G    +G C+  DG Q+   GH+
Sbjct: 62  LHGIVDDAHRLRKLQLAQLSIEPKLLLQEALSQASRAGLGLHEGTCRLMDGPQQESLGHM 121

Query: 87  LLALPLHRSHSLGL 100
            + L LH  H   L
Sbjct: 122 SMPLLLHDRHCSSL 135


>gi|239750328 PREDICTED: hypothetical protein XP_002347384 [Homo
           sapiens]
          Length = 146

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 32  VQGVGPGQQLLQAAQLPLLLLTVLLLLLSLLLQGGDLGFIAADGVCQ--DGLQR---GHL 86
           + G+      L+  QL  L +   LLL   L Q    G    +G C+  DG Q+   GH+
Sbjct: 62  LHGIVDDAHRLRKLQLAQLSIEPKLLLQEALSQASRAGLGLHEGTCRLMDGPQQESLGHM 121

Query: 87  LLALPLHRSHSLGL 100
            + L LH  H   L
Sbjct: 122 SMPLLLHDRHCSSL 135


>gi|239744634 PREDICTED: hypothetical protein XP_002343228 [Homo
           sapiens]
          Length = 146

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 32  VQGVGPGQQLLQAAQLPLLLLTVLLLLLSLLLQGGDLGFIAADGVCQ--DGLQR---GHL 86
           + G+      L+  QL  L +   LLL   L Q    G    +G C+  DG Q+   GH+
Sbjct: 62  LHGIVDDAHRLRKLQLAQLSIEPKLLLQEALSQASRAGLGLHEGTCRLMDGPQQESLGHM 121

Query: 87  LLALPLHRSHSLGL 100
            + L LH  H   L
Sbjct: 122 SMPLLLHDRHCSSL 135


>gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens]
          Length = 843

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 1   MGHPQSSTFFQIPGQQGSHPNP--NLFHLLLQGVQGVGPG 38
           M HP+   F+QI  ++  HPNP    F  L +G   V PG
Sbjct: 126 MMHPEPGKFYQINPEEYEHPNPWKESFQQLYKGAH-VKPG 164


>gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens]
          Length = 686

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 1   MGHPQSSTFFQIPGQQGSHPNP--NLFHLLLQGVQGVGPG 38
           M HP+   F+QI  ++  HPNP    F  L +G   V PG
Sbjct: 126 MMHPEPGKFYQINPEEYEHPNPWKESFQQLYKGAH-VKPG 164


>gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens]
          Length = 585

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 1   MGHPQSSTFFQIPGQQGSHPNP--NLFHLLLQGVQGVGPG 38
           M HP+   F+QI  ++  HPNP    F  L +G   V PG
Sbjct: 126 MMHPEPGKFYQINPEEYEHPNPWKESFQQLYKGAH-VKPG 164


>gi|117606357 anterior pharynx defective 1 homolog A isoform 2 [Homo
           sapiens]
          Length = 247

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 26  HLLLQGVQGVGPGQQLLQAAQLPLLLLTVLLLLLSLLLQGGDLGFIAADGVCQD 79
           HLL  G+  + P  +   A+ LP+  +TV + L + +  GG L  I    +C+D
Sbjct: 197 HLLTSGLTFLNPWYE---ASLLPIYAVTVSMGLWAFITAGGSLRSIQRSLLCKD 247


>gi|11321593 insulin-like growth factor binding protein 6 [Homo
          sapiens]
          Length = 240

 Score = 27.3 bits (59), Expect = 3.5
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 48 PLLLLTVLLLLLSLLLQGGDLGFIAADGVCQDGLQRG 84
          P  LL  LLLLL+LLL     G +A    C  G+Q G
Sbjct: 3  PHRLLPPLLLLLALLLAASPGGALARCPGCGQGVQAG 39


>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
          Length = 1235

 Score = 27.3 bits (59), Expect = 3.5
 Identities = 32/78 (41%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 24   LFHLLLQGVQ-GVGPGQQLLQAAQLPLLLLTVLLLLLSLLLQGGDLGFIAADGVCQDGLQ 82
            L H LL G+   VG    LL     PLLLL +LL LL+    GG    + A  V   GL 
Sbjct: 947  LSHGLLAGLSFAVGSSSGLL-----PLLLL-LLLPLLAAQGGGGLQAALLALEVGLVGLG 1000

Query: 83   RGHLLLALPLHRSHSLGL 100
              +LLL   LH   SL L
Sbjct: 1001 ASYLLLCTALHLPSSLFL 1018


>gi|239755473 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 387

 Score = 26.9 bits (58), Expect = 4.6
 Identities = 16/49 (32%), Positives = 17/49 (34%)

Query: 64  QGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHG 112
           Q       AA G CQ  L      L LP    H   L    H  H +HG
Sbjct: 319 QSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGHHRHGVHG 367


>gi|239749968 PREDICTED: hypothetical protein XP_002347245 [Homo
           sapiens]
          Length = 387

 Score = 26.9 bits (58), Expect = 4.6
 Identities = 16/49 (32%), Positives = 17/49 (34%)

Query: 64  QGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHG 112
           Q       AA G CQ  L      L LP    H   L    H  H +HG
Sbjct: 319 QSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGHHRHGVHG 367


>gi|239744278 PREDICTED: hypothetical protein XP_002343110 [Homo
           sapiens]
          Length = 387

 Score = 26.9 bits (58), Expect = 4.6
 Identities = 16/49 (32%), Positives = 17/49 (34%)

Query: 64  QGGDLGFIAADGVCQDGLQRGHLLLALPLHRSHSLGLRALAHLCHSLHG 112
           Q       AA G CQ  L      L LP    H   L    H  H +HG
Sbjct: 319 QSAQAALDAAHGPCQASLPSSQASLPLPQSLQHGGQLLQQGHHRHGVHG 367


>gi|34577055 F-box only protein 30 [Homo sapiens]
          Length = 745

 Score = 26.9 bits (58), Expect = 4.6
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 90  LPLHRSH--SLGLRALAHLCHSLHGFHFCQGAC 120
           L LH  H  SL    L H+   L GF  CQ +C
Sbjct: 606 LGLHNDHLSSLPFEVLQHIAGFLDGFSLCQLSC 638


>gi|4505737 complement factor properdin precursor [Homo sapiens]
          Length = 469

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 41 LLQAAQLPLLLLTVLLLLLSLLLQGGD 67
          + + AQ P LLL  LLLLL+L   G D
Sbjct: 2  ITEGAQAPRLLLPPLLLLLTLPATGSD 28


>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
          Length = 237

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 94  RSHSLGLRALA--HLCHSLHGFHFCQGACQLSPKPAELT 130
           RS  + +RAL   H    L  F FC G+C+ +  P +L+
Sbjct: 143 RSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLS 181


>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
           sapiens]
          Length = 220

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 94  RSHSLGLRALA--HLCHSLHGFHFCQGACQLSPKPAELT 130
           RS  + +RAL   H    L  F FC G+C+ +  P +L+
Sbjct: 126 RSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLS 164


>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
           sapiens]
          Length = 228

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 94  RSHSLGLRALA--HLCHSLHGFHFCQGACQLSPKPAELT 130
           RS  + +RAL   H    L  F FC G+C+ +  P +L+
Sbjct: 134 RSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLS 172


>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
           sapiens]
          Length = 220

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 94  RSHSLGLRALA--HLCHSLHGFHFCQGACQLSPKPAELT 130
           RS  + +RAL   H    L  F FC G+C+ +  P +L+
Sbjct: 126 RSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLS 164


>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
           sapiens]
          Length = 228

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 94  RSHSLGLRALA--HLCHSLHGFHFCQGACQLSPKPAELT 130
           RS  + +RAL   H    L  F FC G+C+ +  P +L+
Sbjct: 134 RSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLS 172


>gi|36951034 G protein-coupled receptor 78 [Homo sapiens]
          Length = 363

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 35 VGPGQQLLQAAQLPLLLLTVLLLLLSLLL----QGGDLGFIAADGVCQDGLQRGHLLLA 89
          +GPG+ LL  A L +++L V LL  +L+L       +L    A GV    L  GHLLLA
Sbjct: 1  MGPGEALL--AGLLVMVLAVALLSNALVLLCCAYSAELR-TRASGVLLVNLSLGHLLLA 56


>gi|223671861 complement factor properdin precursor [Homo sapiens]
          Length = 469

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 41 LLQAAQLPLLLLTVLLLLLSLLLQGGD 67
          + + AQ P LLL  LLLLL+L   G D
Sbjct: 2  ITEGAQAPRLLLPPLLLLLTLPATGSD 28


>gi|116235482 glycosyltransferase-like 1B [Homo sapiens]
          Length = 721

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 13/18 (72%), Positives = 14/18 (77%)

Query: 52 LTVLLLLLSLLLQGGDLG 69
          L +LLLLL  LL GGDLG
Sbjct: 15 LLLLLLLLGFLLFGGDLG 32


>gi|38788260 bromodomain PHD finger transcription factor isoform 2
            [Homo sapiens]
          Length = 2903

 Score = 26.2 bits (56), Expect = 7.8
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 16   QGSHPNPNLFHLLLQGVQGV-GPGQQLLQAA 45
            QG         L+ QGV  + GPGQQL+QAA
Sbjct: 2296 QGQGQTTGQLQLIPQGVTVLPGPGQQLMQAA 2326


>gi|38788274 bromodomain PHD finger transcription factor isoform 1
            [Homo sapiens]
          Length = 2920

 Score = 26.2 bits (56), Expect = 7.8
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 16   QGSHPNPNLFHLLLQGVQGV-GPGQQLLQAA 45
            QG         L+ QGV  + GPGQQL+QAA
Sbjct: 2170 QGQGQTTGQLQLIPQGVTVLPGPGQQLMQAA 2200


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.144    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,889,585
Number of Sequences: 37866
Number of extensions: 262786
Number of successful extensions: 862
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 31
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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