Guide to the Human Genome
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Name: LOC100292876 Sequence: fasta or formatted (146aa) NCBI GI: 239755827
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         13           1
 C cysteine            2.1          3           1
 D aspartate           3.4          5           2
 E glutamate           4.1          6           2
 F phenylalanine       1.4          2           1
 G glycine             7.5         11           1
 H histidine           8.9         13           1
 I isoleucine          2.1          3           1
 K lysine              6.2          9           2
 L leucine            17.1         25           3
 M methionine          4.8          7           1
 N asparagine          0.7          1           1
 P proline             5.5          8           1
 Q glutamine           6.2          9           2
 R arginine            6.8         10           1
 S serine              7.5         11           2
 T threonine           0.7          1           1
 V valine              4.1          6           2
 W tryptophan          0.7          1           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290338          1.000   PREDICTED: hypothetical protein XP_002347384 
LOC100288249          1.000   PREDICTED: hypothetical protein XP_002343228 
VPRBP                 0.011   HIV-1 Vpr binding protein 
CD3EAP                0.007   CD3E antigen, epsilon polypeptide associated protein ...
HAND1                 0.007   basic helix-loop-helix transcription factor HAND1 [Ho...
FAM161B               0.007   hypothetical protein LOC145483 
C20orf74              0.007   akt substrate AS250 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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