Guide to the Human Genome
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Name: LOC100292887 Sequence: fasta or formatted (130aa) NCBI GI: 239756537
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9          9           2
 C cysteine            3.1          4           1
 D aspartate           2.3          3           1
 E glutamate           0.8          1           1
 F phenylalanine       4.6          6           2
 G glycine            12.3         16           2
 H histidine           7.7         10           1
 I isoleucine          1.5          2           1
 K lysine              0.8          1           1
 L leucine            25.4         33           5
 M methionine          0.8          1           1
 N asparagine          1.5          2           1
 P proline             6.9          9           1
 Q glutamine          11.5         15           2
 R arginine            2.3          3           1
 S serine              6.2          8           2
 T threonine           2.3          3           1
 V valine              3.1          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288650          1.000   PREDICTED: hypothetical protein XP_002343505 
EP300                 0.025   E1A binding protein p300 
CTSA                  0.021   cathepsin A isoform a precursor 
GPR125                0.016   G protein-coupled receptor 125 
BEST1                 0.016   bestrophin 1 isoform 2 
LOC100292876          0.012   PREDICTED: hypothetical protein 
LOC100290338          0.012   PREDICTED: hypothetical protein XP_002347384 
LOC100288249          0.012   PREDICTED: hypothetical protein XP_002343228 
FBXO11                0.012   F-box only protein 11 isoform 1 
FBXO11                0.012   F-box only protein 11 isoform 2 
FBXO11                0.012   F-box only protein 11 isoform 3 
APH1A                 0.012   anterior pharynx defective 1 homolog A isoform 2 [H...
IGFBP6                0.008   insulin-like growth factor binding protein 6 
TAOK2                 0.008   TAO kinase 2 isoform 2 
LOC100292936          0.008   PREDICTED: hypothetical protein 
LOC100290616          0.008   PREDICTED: hypothetical protein XP_002347245 
LOC100288128          0.008   PREDICTED: hypothetical protein XP_002343110 
FBXO30                0.008   F-box only protein 30 
CFP                   0.008   complement factor properdin precursor 
ARTN                  0.008   neurotrophic factor artemin isoform 2 
ARTN                  0.008   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.008   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.008   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.008   neurotrophic factor artemin isoform 3 precursor [Ho...
GPR78                 0.008   G protein-coupled receptor 78 
CFP                   0.008   complement factor properdin precursor 
GYLTL1B               0.008   glycosyltransferase-like 1B 
BPTF                  0.004   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.004   bromodomain PHD finger transcription factor isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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