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Search of human proteins with 239756530
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756530 PREDICTED: hypothetical protein [Homo sapiens]
(255 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756530 PREDICTED: hypothetical protein [Homo sapiens] 547 e-156
gi|239745471 PREDICTED: hypothetical protein XP_002343501 [Homo ... 192 2e-49
gi|46358366 zinc finger protein 746 [Homo sapiens] 37 0.013
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ... 35 0.049
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ... 35 0.049
gi|7657269 PDS5, regulator of cohesion maintenance, homolog B [H... 34 0.11
gi|21361499 SUMO1/sentrin/SMT3 specific protease 3 [Homo sapiens] 34 0.14
gi|239757152 PREDICTED: hypothetical protein [Homo sapiens] 33 0.18
gi|169164474 PREDICTED: hypothetical protein [Homo sapiens] 33 0.18
gi|239751653 PREDICTED: hypothetical protein XP_002347960 [Homo ... 33 0.18
gi|239747958 PREDICTED: hypothetical protein isoform 4 [Homo sap... 33 0.18
gi|239741853 PREDICTED: hypothetical protein isoform 2 [Homo sap... 33 0.18
gi|28559039 mediator complex subunit 1 [Homo sapiens] 33 0.32
gi|23238200 RELT tumor necrosis factor receptor precursor [Homo ... 32 0.41
gi|21361873 RELT tumor necrosis factor receptor precursor [Homo ... 32 0.41
gi|148833508 notch1 preproprotein [Homo sapiens] 32 0.54
gi|21265034 ADAM metallopeptidase with thrombospondin type 1 mot... 32 0.54
gi|169166769 PREDICTED: hypothetical protein [Homo sapiens] 32 0.54
gi|169166416 PREDICTED: hypothetical protein [Homo sapiens] 32 0.54
gi|157504499 ankyrin repeat domain 47 [Homo sapiens] 32 0.54
gi|169166960 PREDICTED: hypothetical protein [Homo sapiens] 32 0.70
gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens] 32 0.70
gi|15431293 ribosomal protein L15 [Homo sapiens] 32 0.70
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 32 0.70
gi|122939147 Rho GTPase activating protein 9 isoform 1 [Homo sap... 32 0.70
gi|122939149 Rho GTPase activating protein 9 isoform 3 [Homo sap... 32 0.70
gi|122939151 Rho GTPase activating protein 9 isoform 2 [Homo sap... 32 0.70
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 31 0.92
gi|4557489 cone-rod homeobox protein [Homo sapiens] 31 1.2
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re... 31 1.2
>gi|239756530 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 547 bits (1410), Expect = e-156
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MAGPPARETRLQPFPTPRPAGKAGSTVHGGSLGWAWVSDLSLCPQVNVTCVLRIPSIRRA 60
MAGPPARETRLQPFPTPRPAGKAGSTVHGGSLGWAWVSDLSLCPQVNVTCVLRIPSIRRA
Sbjct: 1 MAGPPARETRLQPFPTPRPAGKAGSTVHGGSLGWAWVSDLSLCPQVNVTCVLRIPSIRRA 60
Query: 61 GRGSHAEAKPGAPTGRSPVCQRCRWPPLQTPGAHHWSGRAESRGEASVPDIPALGVPGQA 120
GRGSHAEAKPGAPTGRSPVCQRCRWPPLQTPGAHHWSGRAESRGEASVPDIPALGVPGQA
Sbjct: 61 GRGSHAEAKPGAPTGRSPVCQRCRWPPLQTPGAHHWSGRAESRGEASVPDIPALGVPGQA 120
Query: 121 TPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQEDEVDAWQKAEPHVCQQEHQVEALQQ 180
TPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQEDEVDAWQKAEPHVCQQEHQVEALQQ
Sbjct: 121 TPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQEDEVDAWQKAEPHVCQQEHQVEALQQ 180
Query: 181 GQGPGETDATAAERRAGGKDASLVQHLVPEVRVGGRRGGSSRDHPAPPGAYWAGQLHHHG 240
GQGPGETDATAAERRAGGKDASLVQHLVPEVRVGGRRGGSSRDHPAPPGAYWAGQLHHHG
Sbjct: 181 GQGPGETDATAAERRAGGKDASLVQHLVPEVRVGGRRGGSSRDHPAPPGAYWAGQLHHHG 240
Query: 241 ALPAHCPRSSYQRYC 255
ALPAHCPRSSYQRYC
Sbjct: 241 ALPAHCPRSSYQRYC 255
>gi|239745471 PREDICTED: hypothetical protein XP_002343501 [Homo
sapiens]
Length = 202
Score = 192 bits (488), Expect = 2e-49
Identities = 97/111 (87%), Positives = 100/111 (90%), Gaps = 3/111 (2%)
Query: 99 RAESRGEASVPD--IPALGVPGQATPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQED 156
R RG+A PD IP++ QATPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQED
Sbjct: 22 RKSCRGKARSPDREIPSVSEM-QATPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQED 80
Query: 157 EVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERRAGGKDASLVQHL 207
EVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERRAGGKDASLVQHL
Sbjct: 81 EVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERRAGGKDASLVQHL 131
>gi|46358366 zinc finger protein 746 [Homo sapiens]
Length = 644
Score = 37.4 bits (85), Expect = 0.013
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 108 VPDIPALGVPGQATPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQEDEVDAWQKAEPH 167
+PD+P PG P P P DL + + E +Q Q V+AW +P
Sbjct: 164 IPDVPVDPSPGSGPPVPAP---DLLMQIKQ-------EGELQLQEQQALGVEAWAAGQPD 213
Query: 168 VCQQEHQVEALQQGQGPGETDATA 191
+ ++ + L G G TDAT+
Sbjct: 214 IGEEPWGLSQLDSGAGDISTDATS 237
>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
Length = 177
Score = 35.4 bits (80), Expect = 0.049
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 70 PGAPTGRSPVCQRCRWPPLQTPGAHHWSGRAESRGEASVPDIPA----LGVPGQATP 122
P A PV R R PP PGA W GR E R + P LG PG++ P
Sbjct: 71 PNASASPRPVSCR-RAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAP 126
>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
sapiens]
Length = 177
Score = 35.4 bits (80), Expect = 0.049
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 70 PGAPTGRSPVCQRCRWPPLQTPGAHHWSGRAESRGEASVPDIPA----LGVPGQATP 122
P A PV R R PP PGA W GR E R + P LG PG++ P
Sbjct: 71 PNASASPRPVSCR-RAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAP 126
>gi|7657269 PDS5, regulator of cohesion maintenance, homolog B [Homo
sapiens]
Length = 1447
Score = 34.3 bits (77), Expect = 0.11
Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 17/150 (11%)
Query: 55 PSIRRAGRGSHAEAKPGAPTGRSPVCQRCRWPPLQTPGAHHWSGR-----AESRGEASVP 109
P+++ + +GS ++ P AP ++ ++ H R AES +++
Sbjct: 1306 PTMKTSKKGSKKKSGPPAPEEEEEEERQSGNTEQKSKSKQHRVSRRAQQRAESPESSAIE 1365
Query: 110 DIPALGVPGQATPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQEDEVDAWQKAEPHVC 169
+ G+ PS P+ + + + V VG + Q +ND +EVD +Q + P
Sbjct: 1366 STQSTPQKGRGRPSKTPSPSQPK----KNVRVGRSKQAATKENDSSEEVDVFQGSSP--- 1418
Query: 170 QQEHQVEALQQGQGPGETDATAAERRAGGK 199
V+ + Q + E +T RR K
Sbjct: 1419 -----VDDIPQEETEEEEVSTVNVRRRSAK 1443
>gi|21361499 SUMO1/sentrin/SMT3 specific protease 3 [Homo sapiens]
Length = 574
Score = 33.9 bits (76), Expect = 0.14
Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 61 GRGSHAEAKPGA---PTGRSPVCQRCRWPPLQTPGAHHWSGRAESRGEASVPDIPALGVP 117
G GS PG P SP +R RWPP P G G + VP
Sbjct: 7 GTGSWGPEPPGPGIPPAYSSPRRERLRWPPPPKPRLKSGGGFGPDPGSGTT-------VP 59
Query: 118 GQATPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQEDEVDAWQ 162
+ P P P+ + E +E D+E+EV AW+
Sbjct: 60 ARRLPVPRPSFDASASEEEE-------EEEEEEDEDEEEEVAAWR 97
>gi|239757152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 33.5 bits (75), Expect = 0.18
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 17/102 (16%)
Query: 55 PSIRRAGRGSHAEAKPGAPTGR----SPVCQRCRWPPLQTPGAHHWSGRAES-RGEASVP 109
P + R GRG A PG P GR P R P + W+G +S R S+P
Sbjct: 134 PGVVRWGRGCLELAGPGPPCGRLRGLGPSPPRAARPSVPAAAGCGWAGSRDSGRPVPSLP 193
Query: 110 DIPALG--------VPGQATPSPCPANADLQGDVVEGVHVGC 143
LG P PS C + G V+ G +GC
Sbjct: 194 VDCGLGPEALLCSSAPAARRPSLCGGH----GRVMRGFRLGC 231
>gi|169164474 PREDICTED: hypothetical protein [Homo sapiens]
Length = 259
Score = 33.5 bits (75), Expect = 0.18
Identities = 41/141 (29%), Positives = 48/141 (34%), Gaps = 21/141 (14%)
Query: 18 RPAGKAGSTVHGGSLGWAWV----SDLSLCPQVNVTCVLRI-PSIRRAGRGSHAEAKPGA 72
R G GG LGWA P + T + P +R GRGS A P
Sbjct: 92 RGGGGCARATRGGDLGWAVALPHRPSALAGPLPSQTAERQARPLVRELGRGSAAAGCPSL 151
Query: 73 PTGRSPVCQRCRWP--------PLQTPGAHHWSGRAESRG-EASVPDIPALGV-PGQATP 122
P +P +RC P L+ P WS R + IPA G P A
Sbjct: 152 PGATTPRPRRCCVPRDLWGGRESLRVPFQPTWSWDTPPRNLVGTAQGIPAAGFWPQHALR 211
Query: 123 SPCPANADLQGDVVEGVHVGC 143
P LQ V VGC
Sbjct: 212 QPGERPCGLQ------VPVGC 226
>gi|239751653 PREDICTED: hypothetical protein XP_002347960 [Homo
sapiens]
Length = 235
Score = 33.5 bits (75), Expect = 0.18
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 17/102 (16%)
Query: 55 PSIRRAGRGSHAEAKPGAPTGR----SPVCQRCRWPPLQTPGAHHWSGRAES-RGEASVP 109
P + R GRG A PG P GR P R P + W+G +S R S+P
Sbjct: 134 PGVVRWGRGCLELAGPGPPCGRLRGLGPSPPRAARPSVPAAAGCGWAGSRDSGRPVPSLP 193
Query: 110 DIPALG--------VPGQATPSPCPANADLQGDVVEGVHVGC 143
LG P PS C + G V+ G +GC
Sbjct: 194 VDCGLGPEALLCSSAPAARRPSLCGGH----GRVMRGFRLGC 231
>gi|239747958 PREDICTED: hypothetical protein isoform 4 [Homo
sapiens]
Length = 259
Score = 33.5 bits (75), Expect = 0.18
Identities = 41/141 (29%), Positives = 48/141 (34%), Gaps = 21/141 (14%)
Query: 18 RPAGKAGSTVHGGSLGWAWV----SDLSLCPQVNVTCVLRI-PSIRRAGRGSHAEAKPGA 72
R G GG LGWA P + T + P +R GRGS A P
Sbjct: 92 RGGGGCARATRGGDLGWAVALPHRPSALAGPLPSQTAERQARPLVRELGRGSAAAGCPSL 151
Query: 73 PTGRSPVCQRCRWP--------PLQTPGAHHWSGRAESRG-EASVPDIPALGV-PGQATP 122
P +P +RC P L+ P WS R + IPA G P A
Sbjct: 152 PGATTPRPRRCCVPRDLWGGRESLRVPFQPTWSWDTPPRNLVGTAQGIPAAGFWPQHALR 211
Query: 123 SPCPANADLQGDVVEGVHVGC 143
P LQ V VGC
Sbjct: 212 QPGERPCGLQ------VPVGC 226
>gi|239741853 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 259
Score = 33.5 bits (75), Expect = 0.18
Identities = 41/141 (29%), Positives = 48/141 (34%), Gaps = 21/141 (14%)
Query: 18 RPAGKAGSTVHGGSLGWAWV----SDLSLCPQVNVTCVLRI-PSIRRAGRGSHAEAKPGA 72
R G GG LGWA P + T + P +R GRGS A P
Sbjct: 92 RGGGGCARATRGGDLGWAVALPHRPSALAGPLPSQTAERQARPLVRELGRGSAAAGCPSL 151
Query: 73 PTGRSPVCQRCRWP--------PLQTPGAHHWSGRAESRG-EASVPDIPALGV-PGQATP 122
P +P +RC P L+ P WS R + IPA G P A
Sbjct: 152 PGATTPRPRRCCVPRDLWGGRESLRVPFQPTWSWDTPPRNLVGTAQGIPAAGFWPQHALR 211
Query: 123 SPCPANADLQGDVVEGVHVGC 143
P LQ V VGC
Sbjct: 212 QPGERPCGLQ------VPVGC 226
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 32.7 bits (73), Expect = 0.32
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 14/113 (12%)
Query: 21 GKAGS---TVHGGSLGWAWVSDLSLCPQVNVTCVLR--------IPSIRRAGRGSHAEAK 69
GK GS T HG S G S + PQ + ++ PS R GS A
Sbjct: 1151 GKPGSSPITKHGLSSG---SSSTKMKPQGKPSSLMNPSLSKPNISPSHSRPPGGSDKLAS 1207
Query: 70 PGAPTGRSPVCQRCRWPPLQTPGAHHWSGRAESRGEASVPDIPALGVPGQATP 122
P P +P + + P G H SG + S G S + + G Q TP
Sbjct: 1208 PMKPVPGTPPSSKAKSPISSGSGGSHMSGTSSSSGMKSSSGLGSSGSLSQKTP 1260
>gi|23238200 RELT tumor necrosis factor receptor precursor [Homo
sapiens]
Length = 430
Score = 32.3 bits (72), Expect = 0.41
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 80 CQRCRWPPLQTPGAHHWSGRAESRGEASVPDIPALG---VPGQATPSPCPANADLQGDVV 136
CQ C W PL T G W GR RG + G PG T + P Q V+
Sbjct: 108 CQPCSWAPLGTHGCDEW-GRRARRGVEVAAGASSGGETRQPGNGTRAGGPEETAAQYAVI 166
Query: 137 EGVHVGC 143
V V C
Sbjct: 167 AIVPVFC 173
>gi|21361873 RELT tumor necrosis factor receptor precursor [Homo
sapiens]
Length = 430
Score = 32.3 bits (72), Expect = 0.41
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 80 CQRCRWPPLQTPGAHHWSGRAESRGEASVPDIPALG---VPGQATPSPCPANADLQGDVV 136
CQ C W PL T G W GR RG + G PG T + P Q V+
Sbjct: 108 CQPCSWAPLGTHGCDEW-GRRARRGVEVAAGASSGGETRQPGNGTRAGGPEETAAQYAVI 166
Query: 137 EGVHVGC 143
V V C
Sbjct: 167 AIVPVFC 173
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 32.0 bits (71), Expect = 0.54
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 146 QEPLIQNDQEDEVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERRAGGKDASLVQ 205
+EP++ D +D+ D Q + H+ + ++ A+ GE DA + G D
Sbjct: 1826 EEPVVLPDLDDQTDHRQWTQQHLDAADLRMSAMAPTPPQGEVDADCMDVNVRGPD-GFTP 1884
Query: 206 HLVPEVRVGGRRGGSSRDHPAPPGA-----YWAGQLHH 238
++ GG G+S + P Y LH+
Sbjct: 1885 LMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHN 1922
>gi|21265034 ADAM metallopeptidase with thrombospondin type 1 motif,
13 isoform 1 preproprotein [Homo sapiens]
Length = 1427
Score = 32.0 bits (71), Expect = 0.54
Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 11/134 (8%)
Query: 73 PTGRSPV-CQRCRWPPLQTPGAHHWSGRAESRGEASVPDIPALGVPGQATPSPCPANADL 131
P ++PV C+ P W+G +G S+ PG+ T + PA A L
Sbjct: 1102 PQAQAPVPADFCQHLPKPVTVRGCWAGPCVGQGTPSLVPHEEAAAPGRTTAT--PAGASL 1159
Query: 132 QGDVVEGVHVGCASQ-EPLIQNDQEDEVDAWQKAEPHVCQQEH-QVEALQQGQGPGETDA 189
+ G+ A Q L+ QE+ V + C ++H + +GPG+ D
Sbjct: 1160 EWSQARGLLFSPAPQPRRLLPGPQENSV------QSSACGRQHLEPTGTIDMRGPGQADC 1213
Query: 190 TAAERRAGGKDASL 203
A R G+ +L
Sbjct: 1214 AVAIGRPLGEVVTL 1227
>gi|169166769 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 32.0 bits (71), Expect = 0.54
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 58 RRAGRGSHAEAKPGAPTGRSPVCQ------RCRWPPLQTPGA 93
RR+ R + AKPGA TG SP + C W P Q P A
Sbjct: 41 RRSRRLGESTAKPGARTGHSPPARPGRHRGGCAWTPNQRPEA 82
>gi|169166416 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 32.0 bits (71), Expect = 0.54
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 58 RRAGRGSHAEAKPGAPTGRSPVCQ------RCRWPPLQTPGA 93
RR+ R + AKPGA TG SP + C W P Q P A
Sbjct: 41 RRSRRLGESTAKPGARTGHSPPARPGRHRGGCAWTPNQRPEA 82
>gi|157504499 ankyrin repeat domain 47 [Homo sapiens]
Length = 821
Score = 32.0 bits (71), Expect = 0.54
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 57 IRRAGRGSHAEAKPGAPTGRSPVCQRCRWPPLQTPGAHHW-SGRAESRGEASVPDIPALG 115
I RG A PG PT R P R ++PGA W S + + + P I + G
Sbjct: 52 IEELERGPAARRAPGPPTSRRPRAPRPGLAGARSPGA--WTSSESLASDDGGAPGILSQG 109
Query: 116 VPGQATPSPCPANADLQGDVVE 137
P P A ++ VE
Sbjct: 110 APSGLLMQPLSPRAPVRNPRVE 131
>gi|169166960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 31.6 bits (70), Expect = 0.70
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 58 RRAGRGSHAEAKPGAPTGRSPVCQ------RCRWPPLQTPGA 93
RR+ R + AKPGA TG SP + C W P Q P A
Sbjct: 41 RRSRRLGESTAKPGARTGHSPPTRPGRHRGGCAWTPNQRPEA 82
>gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]
Length = 689
Score = 31.6 bits (70), Expect = 0.70
Identities = 42/163 (25%), Positives = 53/163 (32%), Gaps = 19/163 (11%)
Query: 87 PLQTPGAHHWSGRAESRGEASVPDIPALGVPGQATPSPCPANADLQGDVVEGVHVGCASQ 146
PL+T H RG+ A G P P L G EG ASQ
Sbjct: 255 PLKTGRKRH-----RHRGQHHQQQQAAGGSESHPVPPTAPLTPLLHG---EG-----ASQ 301
Query: 147 EPLIQNDQEDEVDAWQKAEPHVCQQEHQVEALQQGQGP-GETDATAAERRAGGKDASLVQ 205
+P + D ++ C+ E QGP G A A +S +
Sbjct: 302 QPRHRGQNRDAPQPYELNTAINCRDEVVSPLPSALQGPSGSLSAPPAASVISAPPSSSSR 361
Query: 206 HL----VPEVRVGGRRGGSSRDHPAPPGAYWAGQLHHHGALPA 244
H G RGG G+ W G+ HHH LPA
Sbjct: 362 HRKRRRTSSKSEAGARGGGQGSKEKGRGS-WGGRHHHHHPLPA 403
>gi|15431293 ribosomal protein L15 [Homo sapiens]
Length = 204
Score = 31.6 bits (70), Expect = 0.70
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 159 DAWQKAEPHV--------CQQEHQVEALQQGQGPGETDATAAERRAGGKDASLVQHLVPE 210
+ W+K + V C Q Q+ AL + P D RR G K +++
Sbjct: 9 ELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKA---RRLGYKAKQ--GYVIYR 63
Query: 211 VRVGGRRGGSSRDHPAPPGAYWAGQLHH 238
+RV RRGG R P P GA + +HH
Sbjct: 64 IRV--RRGGRKR--PVPKGATYGKPVHH 87
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 31.6 bits (70), Expect = 0.70
Identities = 42/132 (31%), Positives = 50/132 (37%), Gaps = 16/132 (12%)
Query: 4 PPARETRLQPFPTPRPAGKAGSTVHGGSLGWAWV-SDLSLCPQVN--------VTCVLRI 54
PP +P P R +AG GG LG V S LS + + +T +
Sbjct: 1942 PPLARAVPEPGPRGRAGTEAGPGARGGRLGLVRVASALSSGSESSDRSGFRRQLTFIKES 2001
Query: 55 PSI-RRAGRGSHAEAKPGAPTGRSPVCQRCRWPPLQTPGAHHWSGRAES-RGEASVPDIP 112
P + RR S AE+ AP G SP R P L P S R E R P
Sbjct: 2002 PGLRRRRSELSSAESAASAPQGASP---RRGRPAL--PAVFLCSSRCEELRAAPRQGPAP 2056
Query: 113 ALGVPGQATPSP 124
A P A PSP
Sbjct: 2057 ARQRPPAARPSP 2068
>gi|122939147 Rho GTPase activating protein 9 isoform 1 [Homo
sapiens]
Length = 731
Score = 31.6 bits (70), Expect = 0.70
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 147 EPLIQNDQEDEVDAWQKAEPHVCQ---QEHQVEALQQGQGPGETDATAAERRAGGKDASL 203
E L+Q+D E E+ AW +A V + +E+ +E G GP E A E +++ L
Sbjct: 412 EFLLQSDHETELRAWHRALRTVIERLDRENPLELRLSGSGPAELSAGEDEE----EESEL 467
Query: 204 VQHLVPEVRVGGRR 217
V P +R+ RR
Sbjct: 468 VSK--PLLRLSSRR 479
>gi|122939149 Rho GTPase activating protein 9 isoform 3 [Homo
sapiens]
Length = 547
Score = 31.6 bits (70), Expect = 0.70
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 147 EPLIQNDQEDEVDAWQKAEPHVCQ---QEHQVEALQQGQGPGETDATAAERRAGGKDASL 203
E L+Q+D E E+ AW +A V + +E+ +E G GP E A E +++ L
Sbjct: 228 EFLLQSDHETELRAWHRALRTVIERLDRENPLELRLSGSGPAELSAGEDEE----EESEL 283
Query: 204 VQHLVPEVRVGGRR 217
V P +R+ RR
Sbjct: 284 VSK--PLLRLSSRR 295
>gi|122939151 Rho GTPase activating protein 9 isoform 2 [Homo
sapiens]
Length = 640
Score = 31.6 bits (70), Expect = 0.70
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 147 EPLIQNDQEDEVDAWQKAEPHVCQ---QEHQVEALQQGQGPGETDATAAERRAGGKDASL 203
E L+Q+D E E+ AW +A V + +E+ +E G GP E A E +++ L
Sbjct: 412 EFLLQSDHETELRAWHRALRTVIERLDRENPLELRLSGSGPAELSAGEDEE----EESEL 467
Query: 204 VQHLVPEVRVGGRR 217
V P +R+ RR
Sbjct: 468 VSK--PLLRLSSRR 479
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 31.2 bits (69), Expect = 0.92
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 162 QKAEPHVCQQEHQVEALQQGQGPGETDATAAERRAGG---KDASLVQHLVPEVRVGGRRG 218
Q+ + QQ+ Q + QQ Q P AA G + A+ HL P + G G
Sbjct: 129 QQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPSM--GASNG 186
Query: 219 GSSRDHPA-------PPGAYWAGQLHHHGALPAH 245
G P+ G AG LHHHG AH
Sbjct: 187 GLLYSQPSFTVNGMLGAGGQPAG-LHHHGLRDAH 219
>gi|4557489 cone-rod homeobox protein [Homo sapiens]
Length = 299
Score = 30.8 bits (68), Expect = 1.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 152 NDQEDEVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERRAG 197
N E V W K C+Q+ Q + QQ G+ A A+R+AG
Sbjct: 77 NLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRKAG 122
>gi|38569493 potassium voltage-gated channel, subfamily H
(eag-related), member 3 [Homo sapiens]
Length = 1083
Score = 30.8 bits (68), Expect = 1.2
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 84 RWPPLQTPGAHHWSGRAESRGEASVPDIPALGVPGQATPSPCPANA--DLQGDVVEGVHV 141
R P G GRA + + P P + G P P P N DL VV+G+
Sbjct: 772 RTAPRPRLGGRGRPGRAGALKAEAGPSAPPRALEGLRLP-PMPWNVPPDLSPRVVDGIED 830
Query: 142 GCASQEP 148
GC S +P
Sbjct: 831 GCGSDQP 837
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,872,247
Number of Sequences: 37866
Number of extensions: 788359
Number of successful extensions: 3555
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 3471
Number of HSP's gapped (non-prelim): 196
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.