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Search of human proteins with 239756416
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756416 PREDICTED: hypothetical protein [Homo sapiens]
(97 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756416 PREDICTED: hypothetical protein [Homo sapiens] 199 5e-52
gi|169208393 PREDICTED: hypothetical protein [Homo sapiens] 199 5e-52
gi|223890185 ubiquitin-conjugating enzyme E2Q 2 isoform 2 [Homo ... 124 2e-29
gi|29789401 ubiquitin-conjugating enzyme E2Q 2 isoform 1 [Homo s... 55 2e-08
gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens] 34 0.029
gi|16306487 cadherin 7, type 2 preproprotein [Homo sapiens] 28 2.1
gi|16306489 cadherin 7, type 2 preproprotein [Homo sapiens] 28 2.1
gi|78191787 early estrogen-induced gene 1 protein isoform a [Hom... 27 3.5
gi|24308440 family with sequence similarity 125, member A [Homo ... 26 6.0
gi|4507553 tropomodulin 1 [Homo sapiens] 26 6.0
gi|14249622 ajuba isoform 1 [Homo sapiens] 26 7.8
gi|13129006 nucleolar protein GU2 [Homo sapiens] 26 7.8
gi|150170672 thrombospondin, type I, domain containing 7A [Homo ... 26 7.8
gi|169234617 RAD9 homolog B [Homo sapiens] 26 7.8
gi|156151402 hypothetical protein LOC80183 [Homo sapiens] 26 7.8
>gi|239756416 PREDICTED: hypothetical protein [Homo sapiens]
Length = 97
Score = 199 bits (505), Expect = 5e-52
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MKTASLTEEKLECSLWCCLSDPSPRGLAARCCVLEGLIVQSRRQESSSSFSPICFVDSDE 60
MKTASLTEEKLECSLWCCLSDPSPRGLAARCCVLEGLIVQSRRQESSSSFSPICFVDSDE
Sbjct: 1 MKTASLTEEKLECSLWCCLSDPSPRGLAARCCVLEGLIVQSRRQESSSSFSPICFVDSDE 60
Query: 61 PNLTSVLEHLEDTKNNHSVKREAKLFSLFLMNIIFRN 97
PNLTSVLEHLEDTKNNHSVKREAKLFSLFLMNIIFRN
Sbjct: 61 PNLTSVLEHLEDTKNNHSVKREAKLFSLFLMNIIFRN 97
>gi|169208393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 97
Score = 199 bits (505), Expect = 5e-52
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MKTASLTEEKLECSLWCCLSDPSPRGLAARCCVLEGLIVQSRRQESSSSFSPICFVDSDE 60
MKTASLTEEKLECSLWCCLSDPSPRGLAARCCVLEGLIVQSRRQESSSSFSPICFVDSDE
Sbjct: 1 MKTASLTEEKLECSLWCCLSDPSPRGLAARCCVLEGLIVQSRRQESSSSFSPICFVDSDE 60
Query: 61 PNLTSVLEHLEDTKNNHSVKREAKLFSLFLMNIIFRN 97
PNLTSVLEHLEDTKNNHSVKREAKLFSLFLMNIIFRN
Sbjct: 61 PNLTSVLEHLEDTKNNHSVKREAKLFSLFLMNIIFRN 97
>gi|223890185 ubiquitin-conjugating enzyme E2Q 2 isoform 2 [Homo
sapiens]
Length = 359
Score = 124 bits (311), Expect = 2e-29
Identities = 61/84 (72%), Positives = 69/84 (82%)
Query: 1 MKTASLTEEKLECSLWCCLSDPSPRGLAARCCVLEGLIVQSRRQESSSSFSPICFVDSDE 60
M+ SLTEEKLEC LWCCLSDPSP GLAARCCVLE IV S RQES S SPI FVDS++
Sbjct: 1 MRMDSLTEEKLECRLWCCLSDPSPPGLAARCCVLERSIVPSLRQESYPSSSPIWFVDSED 60
Query: 61 PNLTSVLEHLEDTKNNHSVKREAK 84
PNLTSVLE LEDTKNN+ ++++ K
Sbjct: 61 PNLTSVLERLEDTKNNNLLRQQLK 84
>gi|29789401 ubiquitin-conjugating enzyme E2Q 2 isoform 1 [Homo
sapiens]
Length = 375
Score = 54.7 bits (130), Expect = 2e-08
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 45 ESSSSFSPICFVDSDEPNLTSVLEHLEDTKNNHSVKREAK 84
ES S SPI FVDS++PNLTSVLE LEDTKNN+ ++++ K
Sbjct: 61 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLK 100
>gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens]
Length = 422
Score = 33.9 bits (76), Expect = 0.029
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 45 ESSSSFSPICFVDSDEPNLTSVLEHLEDTKNNHSV 79
ES + PI V+SD+PNL +VLE L D K +++
Sbjct: 110 ESYPAVPPIWSVESDDPNLAAVLERLVDIKKGNTL 144
>gi|16306487 cadherin 7, type 2 preproprotein [Homo sapiens]
Length = 785
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 42 RRQESSSSFSPICFVDSDEPNLTS 65
RRQE S + PI VDS P+L+S
Sbjct: 551 RRQEQSVYYLPIFIVDSGSPSLSS 574
>gi|16306489 cadherin 7, type 2 preproprotein [Homo sapiens]
Length = 785
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 42 RRQESSSSFSPICFVDSDEPNLTS 65
RRQE S + PI VDS P+L+S
Sbjct: 551 RRQEQSVYYLPIFIVDSGSPSLSS 574
>gi|78191787 early estrogen-induced gene 1 protein isoform a [Homo
sapiens]
Length = 384
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 19 LSDPSPRGLAARCCVLEGLIVQSRRQESS 47
L++ + G RCC+LEG ++ RQ++S
Sbjct: 107 LAEFAGSGSTVRCCLLEGYDTKNTRQDNS 135
>gi|24308440 family with sequence similarity 125, member A [Homo
sapiens]
Length = 273
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 16 WCCLSDPSPRGLAARCCVLEG 36
W S P PRG +A C +EG
Sbjct: 17 WSSASAPPPRGFSAISCTVEG 37
>gi|4507553 tropomodulin 1 [Homo sapiens]
Length = 359
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 56 VDSDEPNLTSVLEHLEDTKNNHSVKREAKL 85
V +EPN T V E LE KNN E L
Sbjct: 173 VPDEEPNSTDVEETLERIKNNDPKLEEVNL 202
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 28 AARCCVLEGLIVQSRRQESSSSFSPICF 55
A +CCV LI++ Q S+ P CF
Sbjct: 400 AEKCCVCGHLILEKILQAMGKSYHPGCF 427
>gi|13129006 nucleolar protein GU2 [Homo sapiens]
Length = 737
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 22 PSPRGLAARCCVLEGLIVQSRRQESSSSFSPICFVDSDEPNLTSVLEHLEDTKN 75
PS + L ++ L +SSF P + SD+ +T LE LE+ ++
Sbjct: 547 PSAQRLIEEKGAVDALAAALAHISGASSFEPRSLITSDKGFVTMTLESLEEIQD 600
>gi|150170672 thrombospondin, type I, domain containing 7A [Homo
sapiens]
Length = 1657
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 11 LECSLWCCLSDPSPRGLAARCCVLEGLIVQSR 42
+EC + C LSD SP ++ C L G +++ R
Sbjct: 1281 VECPVNCQLSDWSPWSECSQTCGLTGKMIRRR 1312
>gi|169234617 RAD9 homolog B [Homo sapiens]
Length = 429
Score = 25.8 bits (55), Expect = 7.8
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 21 DPSPRGLAARCCVLEGLIVQSRRQESSSSFSPICFVDSDEPNLTSVLEHLEDT 73
DPS +GLA RC + SR FSP+ F L + E+ DT
Sbjct: 34 DPSKKGLALRC------VNSSRSAYGCVLFSPVFFQHYQWSALVKMSENELDT 80
>gi|156151402 hypothetical protein LOC80183 [Homo sapiens]
Length = 662
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 35 EGLIVQSRRQESSSSFSPICFV 56
EG + SRR SS+SFSP FV
Sbjct: 178 EGAVQVSRRTISSNSFSPEVFV 199
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.131 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,603,034
Number of Sequences: 37866
Number of extensions: 135367
Number of successful extensions: 368
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 15
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.