Guide to the Human Genome
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Name: LOC100128108 Sequence: fasta or formatted (97aa) NCBI GI: 169208393
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {97aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          4           2
 C cysteine            6.2          6           2
 D aspartate           4.1          4           1
 E glutamate           9.3          9           2
 F phenylalanine       5.2          5           1
 G glycine             2.1          2           1
 H histidine           2.1          2           1
 I isoleucine          4.1          4           2
 K lysine              5.2          5           1
 L leucine            13.4         13           1
 M methionine          2.1          2           1
 N asparagine          5.2          5           2
 P proline             4.1          4           1
 Q glutamine           2.1          2           1
 R arginine            6.2          6           2
 S serine             14.4         14           4
 T threonine           4.1          4           1
 V valine              5.2          5           1
 W tryptophan          1.0          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128108          1.000   PREDICTED: hypothetical protein 
UBE2Q2                0.569   ubiquitin-conjugating enzyme E2Q 2 isoform 2 
UBE2Q2                0.172   ubiquitin-conjugating enzyme E2Q 2 isoform 1 
UBE2Q1                0.052   ubiquitin-conjugating enzyme E2Q 
CDH7                  0.017   cadherin 7, type 2 preproprotein 
CDH7                  0.017   cadherin 7, type 2 preproprotein 
FAM102A               0.011   early estrogen-induced gene 1 protein isoform a [Hom...
FAM125A               0.006   family with sequence similarity 125, member A 
TMOD1                 0.006   tropomodulin 1 
JUB                   0.006   ajuba isoform 1 
DDX50                 0.006   nucleolar protein GU2 
THSD7A                0.006   thrombospondin, type I, domain containing 7A 
RAD9B                 0.006   RAD9 homolog B 
C13orf18              0.006   hypothetical protein LOC80183 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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