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Search of human proteins with 239756177
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756177 PREDICTED: hypothetical protein [Homo sapiens]
(198 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756177 PREDICTED: hypothetical protein [Homo sapiens] 416 e-117
gi|34098970 retinal degeneration 3 [Homo sapiens] 78 4e-15
gi|51339291 sterile alpha motif domain containing 9-like [Homo s... 31 0.60
gi|117553613 coiled-coil domain containing 151 [Homo sapiens] 31 0.79
gi|71725360 zinc finger protein 609 [Homo sapiens] 30 1.3
gi|118498362 kinectin 1 isoform b [Homo sapiens] 30 1.8
gi|118498356 kinectin 1 isoform a [Homo sapiens] 30 1.8
gi|118498368 kinectin 1 isoform c [Homo sapiens] 30 1.8
gi|33620775 kinectin 1 isoform a [Homo sapiens] 30 1.8
gi|198442834 coiled-coil domain containing 152 [Homo sapiens] 30 1.8
gi|221219020 NYD-SP11 protein [Homo sapiens] 29 2.3
gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithora... 29 2.3
gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithora... 29 2.3
gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithora... 29 2.3
gi|187960109 RNA binding motif protein 28 [Homo sapiens] 29 3.0
gi|11386139 phospholipase C beta 3 [Homo sapiens] 28 3.9
gi|4557803 Niemann-Pick disease, type C1 precursor [Homo sapiens] 28 3.9
gi|41281453 serine/threonine kinase 2 [Homo sapiens] 28 3.9
gi|77812672 exosome component 9 isoform 1 [Homo sapiens] 28 3.9
gi|77812670 exosome component 9 isoform 2 [Homo sapiens] 28 3.9
gi|192807309 TNFAIP3 interacting protein 3 [Homo sapiens] 28 5.1
gi|192807305 TNFAIP3 interacting protein 3 [Homo sapiens] 28 5.1
gi|109150419 missing oocyte, meiosis regulator, homolog [Homo sa... 28 6.7
gi|163644283 proteasome (prosome, macropain) activator subunit 4... 28 6.7
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H... 27 8.7
>gi|239756177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 198
Score = 416 bits (1069), Expect = e-117
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MPLFGWMKWPKNDSYKPTHYPGSDIVTKTLLRELKWHLKERERLIQEIENEQKVKKTGVD 60
MPLFGWMKWPKNDSYKPTHYPGSDIVTKTLLRELKWHLKERERLIQEIENEQKVKKTGVD
Sbjct: 1 MPLFGWMKWPKNDSYKPTHYPGSDIVTKTLLRELKWHLKERERLIQEIENEQKVKKTGVD 60
Query: 61 YNWLRNYQNPHTTIPVTEQRQLEVLCSQVQPCQTGTILSRFREVLAENDVLPWEIVYIFK 120
YNWLRNYQNPHTTIPVTEQRQLEVLCSQVQPCQTGTILSRFREVLAENDVLPWEIVYIFK
Sbjct: 61 YNWLRNYQNPHTTIPVTEQRQLEVLCSQVQPCQTGTILSRFREVLAENDVLPWEIVYIFK 120
Query: 121 QVLKDFLSSSDRGSEQEDLEDSGSMDCSAPSVIQGDSSKRADKDERPTISSYVDKNTKDR 180
QVLKDFLSSSDRGSEQEDLEDSGSMDCSAPSVIQGDSSKRADKDERPTISSYVDKNTKDR
Sbjct: 121 QVLKDFLSSSDRGSEQEDLEDSGSMDCSAPSVIQGDSSKRADKDERPTISSYVDKNTKDR 180
Query: 181 FPVFSHRIWNLPYYHPSS 198
FPVFSHRIWNLPYYHPSS
Sbjct: 181 FPVFSHRIWNLPYYHPSS 198
>gi|34098970 retinal degeneration 3 [Homo sapiens]
Length = 195
Score = 78.2 bits (191), Expect = 4e-15
Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 1/145 (0%)
Query: 1 MPLFGWMKWPKNDSYKPTHYPGSDIVTKTLLRELKWHLKERERLIQEIENEQKVKKTGVD 60
M L W++W + S T P +++V +TL+ EL ++E ER +E N + TGVD
Sbjct: 1 MSLISWLRWNEAPSRLSTRSP-AEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVD 59
Query: 61 YNWLRNYQNPHTTIPVTEQRQLEVLCSQVQPCQTGTILSRFREVLAENDVLPWEIVYIFK 120
Y+WL + + E+ QLE +C ++ P G + RFR++LAE + E+ +F+
Sbjct: 60 YSWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFR 119
Query: 121 QVLKDFLSSSDRGSEQEDLEDSGSM 145
VL++ L + E L S+
Sbjct: 120 SVLQEVLERMKQEEEAHKLTRQWSL 144
>gi|51339291 sterile alpha motif domain containing 9-like [Homo
sapiens]
Length = 1584
Score = 31.2 bits (69), Expect = 0.60
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 94 TGTILSRFREVLAENDVLPWEIVYIFKQVLKDFLSSSDRGSEQEDLEDSGSMDCSAPSVI 153
TG +L E LPW + K+ S S + D D G +D S PS
Sbjct: 43 TGLVLQELTEKDLVEMGLPWGPALLIKRSYNKLNSKSP----ESDNHDPGQLDNSKPSKT 98
Query: 154 QGDSS-KRADKDERPTISSYVDKNTKD 179
+ + K K+E ++SS +D + ++
Sbjct: 99 EHQKNPKHTKKEEENSMSSNIDYDPRE 125
>gi|117553613 coiled-coil domain containing 151 [Homo sapiens]
Length = 595
Score = 30.8 bits (68), Expect = 0.79
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 31/163 (19%)
Query: 28 KTLLRELKWHLKERERLIQE---------IENEQKVKKTGVDYNWLRNYQNPHTTIPVTE 78
+TL+RE K +RER I E +ENE+ +KT ++ L++ ++ E
Sbjct: 288 ETLVRERK----KRERYISECKKRAEEKKLENERMERKTHREHLLLQSDDTIQDSLHAKE 343
Query: 79 QR--------QLEVLCSQVQPC----QTGTILSRFR---EVLAENDVLPWEIVYIFKQVL 123
+ Q+EV+ +V+ +T +++ RF + A+ + L E ++
Sbjct: 344 EELRQRWSMYQMEVIFGKVKDATGTDETHSLVRRFLAQGDTFAQLETLKSENEQTLVRLK 403
Query: 124 KDFLSSSDRGSEQEDLEDSGSMDCSAPSVIQGDSSKRADKDER 166
++ E EDL+ SG + +Q ++ +R K+ER
Sbjct: 404 QE---KQQLQRELEDLKYSGEATLVSQQKLQAEAQERLKKEER 443
>gi|71725360 zinc finger protein 609 [Homo sapiens]
Length = 1411
Score = 30.0 bits (66), Expect = 1.3
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 123 LKDFLSSSDRGSEQEDLEDSGSMDCSAPSVIQGDSSKRADKDERPTISSYVDKNTKDRFP 182
LK+ S S +ED ++S S DC P+ + S+ K+ RP++ V P
Sbjct: 1167 LKEERSRSKDSVPKEDGKESTSSDCKLPT---SEESRLGSKEPRPSVHVPVSS------P 1217
Query: 183 VFSHRIWNLPYYH 195
+ H+ + +PY H
Sbjct: 1218 LTQHQSY-IPYMH 1229
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 29.6 bits (65), Expect = 1.8
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 28 KTLLRELKWHLKERERLIQEIENEQKVKKTGVDYNWLRNYQN-----PH-TTIPVTEQRQ 81
+ +L+E + L + +L+Q++++E K+ K+ ++ +NYQ PH + V +R+
Sbjct: 923 EAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISERE 982
Query: 82 LEV 84
E+
Sbjct: 983 KEI 985
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 29.6 bits (65), Expect = 1.8
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 28 KTLLRELKWHLKERERLIQEIENEQKVKKTGVDYNWLRNYQN-----PH-TTIPVTEQRQ 81
+ +L+E + L + +L+Q++++E K+ K+ ++ +NYQ PH + V +R+
Sbjct: 946 EAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISERE 1005
Query: 82 LEV 84
E+
Sbjct: 1006 KEI 1008
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 29.6 bits (65), Expect = 1.8
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 28 KTLLRELKWHLKERERLIQEIENEQKVKKTGVDYNWLRNYQN-----PH-TTIPVTEQRQ 81
+ +L+E + L + +L+Q++++E K+ K+ ++ +NYQ PH + V +R+
Sbjct: 946 EAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISERE 1005
Query: 82 LEV 84
E+
Sbjct: 1006 KEI 1008
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 29.6 bits (65), Expect = 1.8
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 28 KTLLRELKWHLKERERLIQEIENEQKVKKTGVDYNWLRNYQN-----PH-TTIPVTEQRQ 81
+ +L+E + L + +L+Q++++E K+ K+ ++ +NYQ PH + V +R+
Sbjct: 946 EAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISERE 1005
Query: 82 LEV 84
E+
Sbjct: 1006 KEI 1008
>gi|198442834 coiled-coil domain containing 152 [Homo sapiens]
Length = 254
Score = 29.6 bits (65), Expect = 1.8
Identities = 18/93 (19%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 26 VTKTLLRE-LKWHLKERERLIQEIENEQKVKKTGVDYNWLRNYQNPHTTIPVTEQRQLEV 84
++ L++E LK H +E + I ++ +E K+K+ G + YQ+ + + E++ E+
Sbjct: 95 ISADLIKEKLKSHEQEYKNNIAKLVSEMKIKEEGYKKEISKLYQDMQRKVELNEEKHKEL 154
Query: 85 LCSQVQPCQTGTILSRFREVLAENDVLPWEIVY 117
+ + R +E +N+++ ++ +
Sbjct: 155 IEKKEMEISELNAKLRSQEKEKQNEIIKLQLEF 187
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 29.3 bits (64), Expect = 2.3
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 78 EQRQLEVLCSQVQPCQTGTILSRFREVLAENDVLPWEIVYIFKQVLKDFLSSSDRGSEQE 137
E+ + +L + + Q G LS E+L E+ L WE +KQV ++ LSS + + +
Sbjct: 1483 EEWEKRLLQEEEKLHQAGEKLSPEEEMLQEDKKLKWE---EWKQVWENMLSSKSKEQQYK 1539
Query: 138 DLED 141
D E+
Sbjct: 1540 DEEE 1543
>gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 1 [Homo
sapiens]
Length = 1834
Score = 29.3 bits (64), Expect = 2.3
Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 39/176 (22%)
Query: 35 KWHLKERERLIQEIENEQKVKKTGVDYNWLRNYQNPHTTIPVTE-----------QRQLE 83
+W+ KE+ RL +E E +++ ++ + ++ NP P+T QR E
Sbjct: 1416 RWYEKEKARLEEERERKRREQERKLGQMRTQSL-NPAPFSPLTAQQMKPEKPSTLQRPQE 1474
Query: 84 VLCSQVQPCQTGTILSR--------FREVLAENDVL---PWE--------------IVYI 118
+ ++QP Q + R +E L+ D L PW+ IV +
Sbjct: 1475 TVIRELQPQQQPRTIERRDLQYITVSKEELSSGDSLSPDPWKRDAKEKLEKQQQMHIVDM 1534
Query: 119 FKQVLKDFLSSSDRGSEQEDLEDSGSMDCSAPSVIQGDSSKRADKDERPTISSYVD 174
+ +++ S DR +E+ D ++ +Q SK+ D+D+ VD
Sbjct: 1535 LSKEIQELQSKPDRSAEESDRLRKLMLEWQFQKRLQ--ESKQKDEDDEEEEDDDVD 1588
>gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 2 [Homo
sapiens]
Length = 1651
Score = 29.3 bits (64), Expect = 2.3
Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 39/176 (22%)
Query: 35 KWHLKERERLIQEIENEQKVKKTGVDYNWLRNYQNPHTTIPVTE-----------QRQLE 83
+W+ KE+ RL +E E +++ ++ + ++ NP P+T QR E
Sbjct: 1417 RWYEKEKARLEEERERKRREQERKLGQMRTQSL-NPAPFSPLTAQQMKPEKPSTLQRPQE 1475
Query: 84 VLCSQVQPCQTGTILSR--------FREVLAENDVL---PWE--------------IVYI 118
+ ++QP Q + R +E L+ D L PW+ IV +
Sbjct: 1476 TVIRELQPQQQPRTIERRDLQYITVSKEELSSGDSLSPDPWKRDAKEKLEKQQQMHIVDM 1535
Query: 119 FKQVLKDFLSSSDRGSEQEDLEDSGSMDCSAPSVIQGDSSKRADKDERPTISSYVD 174
+ +++ S DR +E+ D ++ +Q SK+ D+D+ VD
Sbjct: 1536 LSKEIQELQSKPDRSAEESDRLRKLMLEWQFQKRLQ--ESKQKDEDDEEEEDDDVD 1589
>gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 3 [Homo
sapiens]
Length = 1612
Score = 29.3 bits (64), Expect = 2.3
Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 39/176 (22%)
Query: 35 KWHLKERERLIQEIENEQKVKKTGVDYNWLRNYQNPHTTIPVTE-----------QRQLE 83
+W+ KE+ RL +E E +++ ++ + ++ NP P+T QR E
Sbjct: 1401 RWYEKEKARLEEERERKRREQERKLGQMRTQSL-NPAPFSPLTAQQMKPEKPSTLQRPQE 1459
Query: 84 VLCSQVQPCQTGTILSR--------FREVLAENDVL---PWE--------------IVYI 118
+ ++QP Q + R +E L+ D L PW+ IV +
Sbjct: 1460 TVIRELQPQQQPRTIERRDLQYITVSKEELSSGDSLSPDPWKRDAKEKLEKQQQMHIVDM 1519
Query: 119 FKQVLKDFLSSSDRGSEQEDLEDSGSMDCSAPSVIQGDSSKRADKDERPTISSYVD 174
+ +++ S DR +E+ D ++ +Q SK+ D+D+ VD
Sbjct: 1520 LSKEIQELQSKPDRSAEESDRLRKLMLEWQFQKRLQ--ESKQKDEDDEEEEDDDVD 1573
>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
Length = 759
Score = 28.9 bits (63), Expect = 3.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 129 SSDRGSEQEDLEDSGSMDCSAPSVIQGDSSKRADKDERPTISS 171
SSD E DLE+S S+D + Q D+S +D+ +S+
Sbjct: 280 SSDHSEEDSDLEESDSID-DGEELAQSDTSTEEQEDKAVQVSN 321
>gi|11386139 phospholipase C beta 3 [Homo sapiens]
Length = 1234
Score = 28.5 bits (62), Expect = 3.9
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 127 LSSSDRGSEQEDLEDSGSMDCSAPSVIQGDSSKRAD-KDERPTISSYVD 174
L +DR E+ED E+ D P+ +G +S + +E T+ +Y++
Sbjct: 550 LGPADREDEEEDEEEEEQTDPKKPTTDEGTASSEVNATEEMSTLVNYIE 598
>gi|4557803 Niemann-Pick disease, type C1 precursor [Homo sapiens]
Length = 1278
Score = 28.5 bits (62), Expect = 3.9
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 62 NWLRNYQNPHTTIPVTEQRQLE 83
N+++NY+NP+ TI T +R +E
Sbjct: 589 NFVKNYKNPNLTISFTAERSIE 610
>gi|41281453 serine/threonine kinase 2 [Homo sapiens]
Length = 1235
Score = 28.5 bits (62), Expect = 3.9
Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 38 LKERERLIQEIENEQKVKKTGVDYNWLRNYQNPHTTIPVTEQRQLEVLCSQVQPCQTGTI 97
+ ++ + QEIEN +K +K ++ + HT E ++++ + +
Sbjct: 868 MSKKRQYDQEIENLEKQQKQTIE-----RLEQEHTNRLRDEAKRIKGEQEKELSKFQNML 922
Query: 98 LSRFREVLAENDVLPWEIVYIFKQVLKDFLSSSDRGSEQEDLE-DSGSMDCSAPSVIQGD 156
+R +EV+ E + P E+ + K+ L+ S EQE ++ +D S +IQ
Sbjct: 923 KNRKKEVINEVEKAPKELRKELMKRRKEELAQSQHAQEQEFVQKQQQELDGSLKKIIQQQ 982
Query: 157 SSKRAD 162
++ A+
Sbjct: 983 KAELAN 988
>gi|77812672 exosome component 9 isoform 1 [Homo sapiens]
Length = 456
Score = 28.5 bits (62), Expect = 3.9
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 42 ERLIQEIENEQKVKKTGVDYNWLRNYQNPHTTIPVTEQRQLEVLCSQVQPCQTGTILSRF 101
E +++ +EN+QKV+K G + + + N T E+ P T + +
Sbjct: 263 ELILKALENDQKVRKEGGKFGFAESIANQRITAFKMEK----------APIDTSDVEEKA 312
Query: 102 REVLAENDVLPWEIV 116
E++AE + P E+V
Sbjct: 313 EEIIAEAEP-PSEVV 326
>gi|77812670 exosome component 9 isoform 2 [Homo sapiens]
Length = 439
Score = 28.5 bits (62), Expect = 3.9
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 42 ERLIQEIENEQKVKKTGVDYNWLRNYQNPHTTIPVTEQRQLEVLCSQVQPCQTGTILSRF 101
E +++ +EN+QKV+K G + + + N T E+ P T + +
Sbjct: 263 ELILKALENDQKVRKEGGKFGFAESIANQRITAFKMEK----------APIDTSDVEEKA 312
Query: 102 REVLAENDVLPWEIV 116
E++AE + P E+V
Sbjct: 313 EEIIAEAEP-PSEVV 326
>gi|192807309 TNFAIP3 interacting protein 3 [Homo sapiens]
Length = 325
Score = 28.1 bits (61), Expect = 5.1
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 39 KERERLIQEIENEQKVKKTGVDYNWLRNYQNPHTTIPVTE-----QRQLEVLCSQVQPC- 92
KE+ERL +E+ ++ K N L N + H + Q L + CS + C
Sbjct: 122 KEKERLNEELHELKEENKLLKGKNTLANKEKEHYECEIKRLNKALQDALNIKCSFSEDCL 181
Query: 93 QTGTILSRFREVLAENDVLPWEIVYIFKQVLKDFLSSSDR-GSEQEDLE 140
+ + E+ E +VL + V I+++ K S +R E+E+L+
Sbjct: 182 RKSRVEFCHEEMRTEMEVLKQQ-VQIYEEDFKKERSDRERLNQEKEELQ 229
>gi|192807305 TNFAIP3 interacting protein 3 [Homo sapiens]
Length = 325
Score = 28.1 bits (61), Expect = 5.1
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 39 KERERLIQEIENEQKVKKTGVDYNWLRNYQNPHTTIPVTE-----QRQLEVLCSQVQPC- 92
KE+ERL +E+ ++ K N L N + H + Q L + CS + C
Sbjct: 122 KEKERLNEELHELKEENKLLKGKNTLANKEKEHYECEIKRLNKALQDALNIKCSFSEDCL 181
Query: 93 QTGTILSRFREVLAENDVLPWEIVYIFKQVLKDFLSSSDR-GSEQEDLE 140
+ + E+ E +VL + V I+++ K S +R E+E+L+
Sbjct: 182 RKSRVEFCHEEMRTEMEVLKQQ-VQIYEEDFKKERSDRERLNQEKEELQ 229
>gi|109150419 missing oocyte, meiosis regulator, homolog [Homo
sapiens]
Length = 875
Score = 27.7 bits (60), Expect = 6.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 60 DYNWLRNYQNPHTTIPVTEQRQLEVLCSQVQPC 92
D N +R Y HT P+ ++ + ++ VQPC
Sbjct: 289 DSNIIRLYDMQHTPTPIGDETEPTIIERSVQPC 321
>gi|163644283 proteasome (prosome, macropain) activator subunit 4
[Homo sapiens]
Length = 1843
Score = 27.7 bits (60), Expect = 6.7
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 33 ELKWHLKERERLIQEIENEQKVKKTGVDYNWLRNYQNPHTTIPVTEQRQLEVLCSQVQPC 92
E++ H+ E + +E E Q +K WL + VTEQ QL L ++ P
Sbjct: 1550 EIQNHVMEENGIGEEDERTQGIKLLKTILKWLMASAGRSFSTAVTEQLQLLPLFFKIAPV 1609
Query: 93 QTGTILSRFR-------EVLAENDVLPWEIVYIFKQVLKDFLSSS 130
+ + ++++ + P ++ + QVLK SS
Sbjct: 1610 ENDNSYDELKRDAKLCLSLMSQGLLYPHQVPLVL-QVLKQTARSS 1653
>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
sapiens]
Length = 1094
Score = 27.3 bits (59), Expect = 8.7
Identities = 17/85 (20%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 25 IVTKTLLRELKWHLKERERLIQEIENEQKVKKTGVDYNWLRNYQNPHTTIPVTEQRQLEV 84
I++K+L+R L+ + + + ++Q I +++ G+ +L+++ T + + +LE+
Sbjct: 334 IISKSLVRLLRSNREVQYIVLQNIAT-MSIQRKGMFEPYLKSFYVRSTDPTMIKTLKLEI 392
Query: 85 LCSQVQPCQTGTILSRFREVLAEND 109
L + T+L F+ + D
Sbjct: 393 LTNLANEANISTLLREFQTYVKSQD 417
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,170,731
Number of Sequences: 37866
Number of extensions: 349688
Number of successful extensions: 1327
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1313
Number of HSP's gapped (non-prelim): 31
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.