Guide to the Human Genome
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Name: LOC100293739 Sequence: fasta or formatted (151aa) NCBI GI: 239755945
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         15           2
 C cysteine            0.7          1           1
 D aspartate           4.6          7           3
 E glutamate           6.0          9           1
 F phenylalanine       2.0          3           1
 G glycine             6.0          9           1
 H histidine           3.3          5           1
 I isoleucine          2.0          3           1
 K lysine              5.3          8           2
 L leucine             8.6         13           1
 M methionine          6.0          9           3
 N asparagine          2.0          3           1
 P proline             7.9         12           2
 Q glutamine           3.3          5           2
 R arginine            7.9         12           2
 S serine              6.6         10           1
 T threonine           9.3         14           3
 V valine              5.3          8           2
 W tryptophan          2.6          4           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294421          1.000   PREDICTED: hypothetical protein 
LOC100288239          0.406   PREDICTED: hypothetical protein XP_002343261 
C12orf42              0.035   hypothetical protein LOC374470 
C12orf42              0.035   hypothetical protein LOC374470 
FRMPD4                0.024   FERM and PDZ domain containing 4 
MAGEL2                0.024   MAGE-like protein 2 
LOC100129907          0.014   PREDICTED: hypothetical protein 
LOC100292157          0.014   PREDICTED: hypothetical protein 
LOC100129907          0.014   PREDICTED: hypothetical protein 
LOC100129907          0.014   PREDICTED: hypothetical protein 
LOC100133161          0.010   PREDICTED: hypothetical protein 
C20orf71              0.010   short long palate, lung and nasal epithelium carcin...
C20orf71              0.010   short long palate, lung and nasal epithelium carcin...
C17orf82              0.010   hypothetical protein LOC388407 
WNK4                  0.010   WNK lysine deficient protein kinase 4 
LOC100132062          0.010   PREDICTED: hypothetical protein 
LOC100132287          0.010   PREDICTED: hypothetical protein 
LOC100132062          0.010   PREDICTED: hypothetical protein 
LOC100290926          0.007   PREDICTED: hypothetical protein XP_002347568 
LOC100288995          0.007   PREDICTED: hypothetical protein XP_002343379 
ZNF469                0.007   zinc finger protein 469 
SNTA1                 0.007   acidic alpha 1 syntrophin 
PCDHGA4               0.007   protocadherin gamma subfamily A, 4 isoform 1 precurs...
UBN2                  0.007   ubinuclein 2 
GPR144                0.007   G protein-coupled receptor 144 
COL5A1                0.007   alpha 1 type V collagen preproprotein 
WDR33                 0.007   WD repeat domain 33 isoform 1 
C1orf116              0.007   specifically androgen-regulated protein isoform 2 [...
C1orf116              0.007   specifically androgen-regulated protein isoform 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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