Guide to the Human Genome
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Name: LOC100129362 Sequence: fasta or formatted (194aa) NCBI GI: 239755824
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {194aa} PREDICTED: hypothetical protein
alt mRNA {194aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.9         29           2
 C cysteine            2.1          4           1
 D aspartate           4.1          8           1
 E glutamate           2.6          5           1
 F phenylalanine       3.1          6           2
 G glycine            12.9         25           2
 H histidine           3.6          7           1
 I isoleucine          1.0          2           1
 K lysine              1.0          2           1
 L leucine             8.8         17           3
 M methionine          0.5          1           1
 N asparagine          0.0          0           0
 P proline             9.3         18           4
 Q glutamine           6.2         12           1
 R arginine            8.2         16           1
 S serine              9.3         18           5
 T threonine           3.1          6           2
 V valine              8.2         16           2
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129362          1.000   PREDICTED: hypothetical protein 
LOC100129362          1.000   PREDICTED: hypothetical protein 
LOC100292292          0.038   PREDICTED: hypothetical protein 
LOC100291384          0.038   PREDICTED: hypothetical protein XP_002347156 
LOC100287578          0.038   PREDICTED: hypothetical protein XP_002343004 
DISC1                 0.033   disrupted in schizophrenia 1 isoform S 
DISC1                 0.033   disrupted in schizophrenia 1 isoform Es 
DISC1                 0.033   disrupted in schizophrenia 1 isoform Lv 
DISC1                 0.033   disrupted in schizophrenia 1 isoform L 
PRR12                 0.033   proline rich 12 
HOXD11                0.033   homeobox D11 
TAF10                 0.033   TBP-related factor 10 
MN1                   0.033   meningioma  1 
JPH4                  0.033   junctophilin 4 
JPH4                  0.033   junctophilin 4 
LOC731551             0.030   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC650354             0.030   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC100133305          0.030   PREDICTED: hypothetical protein 
LOC100133305          0.030   PREDICTED: hypothetical protein 
OSBP                  0.030   oxysterol binding protein 
PHOX2B                0.030   paired-like homeobox 2b 
TLX1                  0.027   T-cell leukemia homeobox 1 
ARL6IP4               0.027   SRp25 nuclear protein isoform 4 
ARL6IP4               0.027   SRp25 nuclear protein isoform 2 
ZNF469                0.027   zinc finger protein 469 
LOC100292845          0.027   PREDICTED: hypothetical protein 
LOC100289230          0.027   PREDICTED: hypothetical protein XP_002342600 
ALPK3                 0.027   alpha-kinase 3 
ARID1B                0.027   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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