Guide to the Human Genome
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Search of human proteins with 239755565

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755565 PREDICTED: hypothetical protein [Homo sapiens]
         (257 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755565 PREDICTED: hypothetical protein [Homo sapiens]           535   e-152
gi|239750071 PREDICTED: hypothetical protein XP_002347270 [Homo ...   535   e-152
gi|239744380 PREDICTED: hypothetical protein XP_002343131 [Homo ...   535   e-152
gi|169162264 PREDICTED: similar to hCG1996527 [Homo sapiens]           32   0.71 
gi|239747467 PREDICTED: similar to hCG1996527 [Homo sapiens]           32   0.71 
gi|239741341 PREDICTED: similar to hCG1996527 [Homo sapiens]           32   0.71 
gi|153070260 myristoylated alanine-rich protein kinase C substra...    30   1.6  
gi|124244056 family with sequence similarity 123B [Homo sapiens]       29   3.5  
gi|88900495 HCF-binding transcription factor Zhangfei [Homo sapi...    29   3.5  
gi|150417978 platelet glycoprotein Ib alpha polypeptide precurso...    29   4.6  
gi|239752866 PREDICTED: similar to hCG1997308 [Homo sapiens]           29   4.6  
gi|239747418 PREDICTED: hypothetical protein XP_002346694 [Homo ...    29   4.6  
gi|239741243 PREDICTED: hypothetical protein XP_002342142 [Homo ...    29   4.6  
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap...    29   4.6  
gi|31317263 tafazzin isoform 4 [Homo sapiens]                          28   6.0  
gi|31317259 tafazzin isoform 2 [Homo sapiens]                          28   6.0  
gi|14917111 adaptor-related protein complex 4, mu 1 subunit [Hom...    28   6.0  
gi|52487176 tripartite motif-containing 37 protein [Homo sapiens]      28   7.9  
gi|15147333 tripartite motif-containing 37 protein [Homo sapiens]      28   7.9  
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]         28   7.9  

>gi|239755565 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score =  535 bits (1379), Expect = e-152
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA 60
           MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA
Sbjct: 1   MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA 60

Query: 61  YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV 120
           YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV
Sbjct: 61  YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV 120

Query: 121 QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP 180
           QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP
Sbjct: 121 QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP 180

Query: 181 PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC 240
           PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC
Sbjct: 181 PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC 240

Query: 241 PYAGRHRIYTAKHVARR 257
           PYAGRHRIYTAKHVARR
Sbjct: 241 PYAGRHRIYTAKHVARR 257


>gi|239750071 PREDICTED: hypothetical protein XP_002347270 [Homo
           sapiens]
          Length = 257

 Score =  535 bits (1379), Expect = e-152
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA 60
           MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA
Sbjct: 1   MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA 60

Query: 61  YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV 120
           YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV
Sbjct: 61  YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV 120

Query: 121 QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP 180
           QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP
Sbjct: 121 QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP 180

Query: 181 PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC 240
           PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC
Sbjct: 181 PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC 240

Query: 241 PYAGRHRIYTAKHVARR 257
           PYAGRHRIYTAKHVARR
Sbjct: 241 PYAGRHRIYTAKHVARR 257


>gi|239744380 PREDICTED: hypothetical protein XP_002343131 [Homo
           sapiens]
          Length = 257

 Score =  535 bits (1379), Expect = e-152
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA 60
           MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA
Sbjct: 1   MTDDNQTVISKDYLQGGLLLRHDYDHFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGA 60

Query: 61  YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV 120
           YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV
Sbjct: 61  YVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDV 120

Query: 121 QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP 180
           QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP
Sbjct: 121 QCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTIFP 180

Query: 181 PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC 240
           PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC
Sbjct: 181 PEGTPAFLLSLREINAFIIVTYRCTTSPRPPCHSEDQGRAQALAATPANNLTPKRSGPKC 240

Query: 241 PYAGRHRIYTAKHVARR 257
           PYAGRHRIYTAKHVARR
Sbjct: 241 PYAGRHRIYTAKHVARR 257


>gi|169162264 PREDICTED: similar to hCG1996527 [Homo sapiens]
          Length = 654

 Score = 31.6 bits (70), Expect = 0.71
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 18/116 (15%)

Query: 74  GQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGEAAPPR- 132
           G+++  GNN+              S  +E+      + STG+ Q   + V  G   PPR 
Sbjct: 393 GKVLSPGNNIRLTHNNSTLMLAGVSVEDEAIYQCVAENSTGSNQASARLVVTGGPEPPRP 452

Query: 133 -GPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTI-FPPEGTPA 186
            GP  H   Y         CH S++            SSR  + + +   P G P+
Sbjct: 453 QGPACHGSLY--------FCHSSVL-------GATPPSSRDIIGYVLHLRPVGEPS 493


>gi|239747467 PREDICTED: similar to hCG1996527 [Homo sapiens]
          Length = 654

 Score = 31.6 bits (70), Expect = 0.71
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 18/116 (15%)

Query: 74  GQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGEAAPPR- 132
           G+++  GNN+              S  +E+      + STG+ Q   + V  G   PPR 
Sbjct: 393 GKVLSPGNNIRLTHNNSTLMLAGVSVEDEAIYQCVAENSTGSNQASARLVVTGGPEPPRP 452

Query: 133 -GPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTI-FPPEGTPA 186
            GP  H   Y         CH S++            SSR  + + +   P G P+
Sbjct: 453 QGPACHGSLY--------FCHSSVL-------GATPPSSRDIIGYVLHLRPVGEPS 493


>gi|239741341 PREDICTED: similar to hCG1996527 [Homo sapiens]
          Length = 654

 Score = 31.6 bits (70), Expect = 0.71
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 18/116 (15%)

Query: 74  GQLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGEAAPPR- 132
           G+++  GNN+              S  +E+      + STG+ Q   + V  G   PPR 
Sbjct: 393 GKVLSPGNNIRLTHNNSTLMLAGVSVEDEAIYQCVAENSTGSNQASARLVVTGGPEPPRP 452

Query: 133 -GPTGHSLSYSGTILGITHCHISIIFLKAGRPNTRTASSRPTVSFTI-FPPEGTPA 186
            GP  H   Y         CH S++            SSR  + + +   P G P+
Sbjct: 453 QGPACHGSLY--------FCHSSVL-------GATPPSSRDIIGYVLHLRPVGEPS 493


>gi|153070260 myristoylated alanine-rich protein kinase C substrate
           [Homo sapiens]
          Length = 332

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 98  SFPEESYPSLANQPSTGAKQGDVQCVSEGEAAPPRGPT 135
           S  E+  P+ A  P  GA   + +  +EGEAA P  PT
Sbjct: 83  SAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPT 120


>gi|124244056 family with sequence similarity 123B [Homo sapiens]
          Length = 1135

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 11/51 (21%)

Query: 90  QPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGEAAPPRGPTGHSLS 140
           QP+P      PE S     + P TG K      V  GE  PP GP G  LS
Sbjct: 271 QPKPA-----PEASSLEEPHSPETGEK------VVAGEVNPPNGPVGDPLS 310


>gi|88900495 HCF-binding transcription factor Zhangfei [Homo
           sapiens]
          Length = 354

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 76  LIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPST---GAKQGDVQCVSEGEAAPPR 132
           L   G+N  TR  + PEP   CS P +   + A +  T   G+     Q   EGE    R
Sbjct: 9   LAASGSNSPTRS-ESPEPAATCSLPSDLTRAAAGEEETAAAGSPGRKQQFGDEGELEAGR 67

Query: 133 GPTG 136
           G  G
Sbjct: 68  GSRG 71


>gi|150417978 platelet glycoprotein Ib alpha polypeptide precursor
           [Homo sapiens]
          Length = 639

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 158 LKAGRPNTRTASSRPTVSFTIFPPEGTPAFLLSLREINAFIIVTYRCTTSPRP-PCHSED 216
           L +  P++   +   T   T FPP  TP F L +  I      T + TT P P P  SE 
Sbjct: 334 LDSQMPSSLHPTQESTKEQTTFPPRWTPNFTLHMESIT--FSKTPKSTTEPTPSPTTSEP 391

Query: 217 QGRAQALAATPANNLTPKRSGP 238
                     PA N+T     P
Sbjct: 392 -------VPEPAPNMTTLEPTP 406


>gi|239752866 PREDICTED: similar to hCG1997308 [Homo sapiens]
          Length = 173

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 82  NVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGEAAPPRGPTGHSLSY 141
           NV  +    PE     S      P+L   P     Q  +   SEG +   RG TG S+ +
Sbjct: 51  NVNLKSSSDPE----ASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGH 106

Query: 142 S 142
           S
Sbjct: 107 S 107


>gi|239747418 PREDICTED: hypothetical protein XP_002346694 [Homo
           sapiens]
          Length = 173

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 82  NVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGEAAPPRGPTGHSLSY 141
           NV  +    PE     S      P+L   P     Q  +   SEG +   RG TG S+ +
Sbjct: 51  NVNLKSSSDPE----ASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGH 106

Query: 142 S 142
           S
Sbjct: 107 S 107


>gi|239741243 PREDICTED: hypothetical protein XP_002342142 [Homo
           sapiens]
          Length = 173

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 82  NVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGEAAPPRGPTGHSLSY 141
           NV  +    PE     S      P+L   P     Q  +   SEG +   RG TG S+ +
Sbjct: 51  NVNLKSSSDPE----ASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGATGKSMGH 106

Query: 142 S 142
           S
Sbjct: 107 S 107


>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
          Length = 2365

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 19/95 (20%)

Query: 39   WRKMKVSRGFCQAQAGAYCLGAYVYHEGIDVVLGFGQLIEEGNNVETRVLQQPEPQGCCS 98
            W K+KV+RG   A                  + G  Q    G+    +    PE Q    
Sbjct: 1664 WPKIKVTRGPATA-----------------TLAGLEQTGPLGSRSTAKGPSLPELQFQPE 1706

Query: 99   FPEESYPSLANQPSTGAKQGDV--QCVSEGEAAPP 131
             PEES PS    P T  KQ D   +  +EG+A  P
Sbjct: 1707 EPEESEPSRGQDPLTDQKQADSADKRPAEGKAGSP 1741


>gi|31317263 tafazzin isoform 4 [Homo sapiens]
          Length = 248

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 4   DNQTVISKDYLQGGLLLRHDYD-HFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGAYV 62
           ++Q+ +   +L G L LRH ++   M  T   + + + K   S  F   +    C G  V
Sbjct: 68  NHQSCMDDPHLWGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVPVCRGDGV 127

Query: 63  YHEGIDVVL 71
           Y +G+D +L
Sbjct: 128 YQKGMDFIL 136


>gi|31317259 tafazzin isoform 2 [Homo sapiens]
          Length = 262

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 4   DNQTVISKDYLQGGLLLRHDYD-HFMNATSGISPLAWRKMKVSRGFCQAQAGAYCLGAYV 62
           ++Q+ +   +L G L LRH ++   M  T   + + + K   S  F   +    C G  V
Sbjct: 68  NHQSCMDDPHLWGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVPVCRGDGV 127

Query: 63  YHEGIDVVL 71
           Y +G+D +L
Sbjct: 128 YQKGMDFIL 136


>gi|14917111 adaptor-related protein complex 4, mu 1 subunit [Homo
           sapiens]
          Length = 453

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 88  LQQPEPQGCCSFPEE-SYPSLANQPSTGAKQGDVQCVSEG---------EAAPPRGPTGH 137
           L  P P+G  S  +E S P    + + GA + D+  V  G         +   P GP  H
Sbjct: 332 LHLPLPRGVVSLSQELSSPEQKAELAEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSH 391

Query: 138 SLSYSGTILGITHCHIS 154
            LS S + LG+    +S
Sbjct: 392 GLSTSASPLGLGPASLS 408


>gi|52487176 tripartite motif-containing 37 protein [Homo sapiens]
          Length = 964

 Score = 28.1 bits (61), Expect = 7.9
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 10/53 (18%)

Query: 75  QLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGE 127
           Q+ +  NN ET  LQ   P+G  + PEE   S            D++C +E E
Sbjct: 871 QMTDLENNSETGELQPVLPEGASAAPEEGMSS----------DSDIECDTENE 913


>gi|15147333 tripartite motif-containing 37 protein [Homo sapiens]
          Length = 964

 Score = 28.1 bits (61), Expect = 7.9
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 10/53 (18%)

Query: 75  QLIEEGNNVETRVLQQPEPQGCCSFPEESYPSLANQPSTGAKQGDVQCVSEGE 127
           Q+ +  NN ET  LQ   P+G  + PEE   S            D++C +E E
Sbjct: 871 QMTDLENNSETGELQPVLPEGASAAPEEGMSS----------DSDIECDTENE 913


>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
          Length = 1003

 Score = 28.1 bits (61), Expect = 7.9
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 15/81 (18%)

Query: 105 PSLANQPSTGAKQGDVQCVSEGEAAPPRGPTGHSLSYSGTILGITHCHISIIFLKAGRPN 164
           P LA  P+ G          EG A    GP+G   S  G +         ++F     P 
Sbjct: 627 PLLALGPTAGD--------GEGSAEGAGGPSGEPFSGLGDLS-------PLLFPPLSAPP 671

Query: 165 TRTASSRPTVSFTIFPPEGTP 185
           T  A +   ++ T+ PP GTP
Sbjct: 672 TLIALNSALLAATLDPPSGTP 692


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,653,927
Number of Sequences: 37866
Number of extensions: 589074
Number of successful extensions: 1616
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1609
Number of HSP's gapped (non-prelim): 23
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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