Guide to the Human Genome
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Name: LOC100293767 Sequence: fasta or formatted (257aa) NCBI GI: 239755565
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         22           2
 C cysteine            3.5          9           2
 D aspartate           3.1          8           2
 E glutamate           4.7         12           2
 F phenylalanine       3.5          9           1
 G glycine             8.9         23           2
 H histidine           3.5          9           1
 I isoleucine          5.4         14           2
 K lysine              3.1          8           1
 L leucine             7.0         18           3
 M methionine          1.2          3           1
 N asparagine          3.5          9           2
 P proline             8.2         21           2
 Q glutamine           5.1         13           2
 R arginine            6.6         17           2
 S serine              7.8         20           2
 T threonine           7.4         19           2
 V valine              4.7         12           2
 W tryptophan          0.4          1           1
 Y tyrosine            3.9         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291506          1.000   PREDICTED: hypothetical protein XP_002347270 
LOC100287678          1.000   PREDICTED: hypothetical protein XP_002343131 
LOC343052             0.014   PREDICTED: similar to hCG1996527 
LOC343052             0.014   PREDICTED: similar to hCG1996527 
LOC343052             0.014   PREDICTED: similar to hCG1996527 
MARCKS                0.010   myristoylated alanine-rich protein kinase C substra...
FAM123B               0.008   family with sequence similarity 123B 
CREBZF                0.008   HCF-binding transcription factor Zhangfei 
GP1BA                 0.008   platelet glycoprotein Ib alpha polypeptide precurso...
LOC100293260          0.008   PREDICTED: similar to hCG1997308 
LOC100291496          0.008   PREDICTED: hypothetical protein XP_002346694 
LOC100287627          0.008   PREDICTED: hypothetical protein XP_002342142 
TRIOBP                0.008   TRIO and F-actin binding protein isoform 6 
TAZ                   0.006   tafazzin isoform 4 
TAZ                   0.006   tafazzin isoform 2 
AP4M1                 0.006   adaptor-related protein complex 4, mu 1 subunit [Hom...
TRIM37                0.006   tripartite motif-containing 37 protein 
TRIM37                0.006   tripartite motif-containing 37 protein 
MBD6                  0.006   methyl-CpG binding domain protein 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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