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Search of human proteins with 239755083
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755083 PREDICTED: similar to hCG1984907 [Homo sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755083 PREDICTED: similar to hCG1984907 [Homo sapiens] 223 3e-59
gi|239753660 PREDICTED: hypothetical protein [Homo sapiens] 114 2e-26
gi|239748319 PREDICTED: hypothetical protein [Homo sapiens] 114 2e-26
gi|169173235 PREDICTED: hypothetical protein [Homo sapiens] 68 1e-12
gi|149363700 syntaxin binding protein 5-like [Homo sapiens] 30 0.41
gi|18252045 ADAM metallopeptidase domain 33 isoform alpha prepro... 28 1.6
gi|24041040 ADAM metallopeptidase domain 33 isoform beta preprop... 28 1.6
gi|56118214 zinc finger protein 161 [Homo sapiens] 27 2.6
gi|239753036 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|239747603 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|239741468 PREDICTED: hypothetical protein isoform 1 [Homo sap... 27 3.5
gi|55743080 ADAM metallopeptidase domain 2 proprotein [Homo sapi... 27 3.5
gi|41352697 centromere protein I [Homo sapiens] 27 3.5
gi|196259799 ring finger protein 212 isoform a [Homo sapiens] 27 3.5
gi|238859649 keratin associated protein 10-8 [Homo sapiens] 26 5.9
gi|169212026 PREDICTED: keratin associated protein [Homo sapiens] 26 5.9
gi|169211819 PREDICTED: keratin associated protein [Homo sapiens] 26 5.9
gi|239745811 PREDICTED: hypothetical protein XP_002343557 [Homo ... 26 5.9
gi|14249386 zinc finger protein 496 [Homo sapiens] 26 5.9
gi|169216272 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|169216572 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|193082982 zinc finger protein 837 isoform 1 [Homo sapiens] 26 7.7
gi|193082980 zinc finger protein 837 isoform 2 [Homo sapiens] 26 7.7
>gi|239755083 PREDICTED: similar to hCG1984907 [Homo sapiens]
Length = 103
Score = 223 bits (568), Expect = 3e-59
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MPRPASARARCAHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELIRPSWLL 60
MPRPASARARCAHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELIRPSWLL
Sbjct: 1 MPRPASARARCAHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELIRPSWLL 60
Query: 61 RSLYESNQDGDLTGFYSFIDTHELYQTSGSFSEMFTWKAPGAH 103
RSLYESNQDGDLTGFYSFIDTHELYQTSGSFSEMFTWKAPGAH
Sbjct: 61 RSLYESNQDGDLTGFYSFIDTHELYQTSGSFSEMFTWKAPGAH 103
>gi|239753660 PREDICTED: hypothetical protein [Homo sapiens]
Length = 111
Score = 114 bits (285), Expect = 2e-26
Identities = 51/53 (96%), Positives = 51/53 (96%)
Query: 1 MPRPASARARCAHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPEL 53
MPRPASARARC HPL CAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPEL
Sbjct: 1 MPRPASARARCTHPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPEL 53
>gi|239748319 PREDICTED: hypothetical protein [Homo sapiens]
Length = 111
Score = 114 bits (285), Expect = 2e-26
Identities = 51/53 (96%), Positives = 51/53 (96%)
Query: 1 MPRPASARARCAHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPEL 53
MPRPASARARC HPL CAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPEL
Sbjct: 1 MPRPASARARCTHPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPEL 53
>gi|169173235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 331
Score = 68.2 bits (165), Expect = 1e-12
Identities = 30/41 (73%), Positives = 34/41 (82%)
Query: 13 HPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPEL 53
HPL+C H PSE++PVPQ+EMQKSPVFCVAHAGS R EL
Sbjct: 277 HPLSCTHFPTFPSEISPVPQLEMQKSPVFCVAHAGSSRLEL 317
>gi|149363700 syntaxin binding protein 5-like [Homo sapiens]
Length = 1186
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 28 NPVPQMEMQKSPVFCVAHAGSCRPELI 54
NP P M++ +SPV C A+ C P+LI
Sbjct: 401 NPYP-MDIHESPVTCTAYFADCPPDLI 426
>gi|18252045 ADAM metallopeptidase domain 33 isoform alpha
preproprotein [Homo sapiens]
Length = 813
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 9 ARCAHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPEL 53
A+CAH C CL P+ M P FC + C P++
Sbjct: 455 AQCAHGDCCVRCLLKPAGALCRQAMGDCDLPEFCTGTSSHCPPDV 499
>gi|24041040 ADAM metallopeptidase domain 33 isoform beta
preproprotein [Homo sapiens]
Length = 787
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 9 ARCAHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPEL 53
A+CAH C CL P+ M P FC + C P++
Sbjct: 455 AQCAHGDCCVRCLLKPAGALCRQAMGDCDLPEFCTGTSSHCPPDV 499
>gi|56118214 zinc finger protein 161 [Homo sapiens]
Length = 521
Score = 27.3 bits (59), Expect = 2.6
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 1 MPRPASARARCAHPLTCAHCLALPSEMNPVPQMEMQKSPV 40
+P P +A AHP+T + LP+ M + + PV
Sbjct: 466 LPTPVTAPVNIAHPVTITSPMNLPTPMTLAAPLNIAMRPV 505
>gi|239753036 PREDICTED: hypothetical protein [Homo sapiens]
Length = 352
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 2 PRPASARARCAHPL--------TCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPE 52
P PAS + A PL T + L L +++ P + S C AH G CRP+
Sbjct: 220 PAPASCQHLQAQPLPHGVFSRPTSSSWLGLQAQLLPHNSLFWPSS---CPAHGGQCRPK 275
>gi|239747603 PREDICTED: hypothetical protein [Homo sapiens]
Length = 352
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 2 PRPASARARCAHPL--------TCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPE 52
P PAS + A PL T + L L +++ P + S C AH G CRP+
Sbjct: 220 PAPASCQHLQAQPLPHGVFSRPTSSSWLGLQAQLLPHNSLFWPSS---CPAHGGQCRPK 275
>gi|239741468 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 352
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 2 PRPASARARCAHPL--------TCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPE 52
P PAS + A PL T + L L +++ P + S C AH G CRP+
Sbjct: 220 PAPASCQHLQAQPLPHGVFSRPTSSSWLGLQAQLLPHNSLFWPSS---CPAHGGQCRPK 275
>gi|55743080 ADAM metallopeptidase domain 2 proprotein [Homo
sapiens]
Length = 735
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 7 ARARCAHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSC 49
A + CA C +CL + E P E P +C + SC
Sbjct: 423 AGSNCAEGPCCENCLFMSKERMCRPSFEECDLPEYCNGSSASC 465
>gi|41352697 centromere protein I [Homo sapiens]
Length = 756
Score = 26.9 bits (58), Expect = 3.5
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 15/92 (16%)
Query: 19 HCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELIR-PSWLLRSL------YESNQDGD 71
HCL LPS+M V + + CV P L+R WL ++L Y+ N
Sbjct: 355 HCLELPSQMGSVLNNSLLLHYINCVRD----EPVLLRFYYWLSQTLQEECIWYKVNNYEH 410
Query: 72 LTGFYSFIDT---HELYQTSGSFS-EMFTWKA 99
F +F+DT E + G +S E F +K+
Sbjct: 411 GKEFTNFLDTIIRAECFLQEGFYSCEAFLYKS 442
>gi|196259799 ring finger protein 212 isoform a [Homo sapiens]
Length = 297
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 30 VPQMEMQKSPV--FCVAHAGS-CRPELIRPSWLLRSLYESNQDGDLT 73
+P + + K PV CV GS C + P WLL + S + G+LT
Sbjct: 202 IPWLTLSKPPVPGECVISRGSPCFCIDVCPHWLLLLAFSSGRHGELT 248
>gi|238859649 keratin associated protein 10-8 [Homo sapiens]
Length = 259
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 11 CAHPLTCAHCLALPSEMNPVPQMEMQKSPVFC 42
C P +CA PS P P + + +PV C
Sbjct: 50 CCEPRSCASSCCTPSCCAPAPCLALVCAPVSC 81
>gi|169212026 PREDICTED: keratin associated protein [Homo sapiens]
Length = 517
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 7 ARARCAHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELIRPS 57
A+ C P C ++ S PV PV CV SC+P L + S
Sbjct: 149 AQPVCCEPAICEPSCSVSSCCQPVGSEATSCQPVLCV--PTSCQPVLCKSS 197
>gi|169211819 PREDICTED: keratin associated protein [Homo sapiens]
Length = 517
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 7 ARARCAHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELIRPS 57
A+ C P C ++ S PV PV CV SC+P L + S
Sbjct: 149 AQPVCCEPAICEPSCSVSSCCQPVGSEATSCQPVLCV--PTSCQPVLCKSS 197
>gi|239745811 PREDICTED: hypothetical protein XP_002343557 [Homo
sapiens]
Length = 517
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 7 ARARCAHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELIRPS 57
A+ C P C ++ S PV PV CV SC+P L + S
Sbjct: 149 AQPVCCEPAICEPSCSVSSCCQPVGSEATSCQPVLCV--PTSCQPVLCKSS 197
>gi|14249386 zinc finger protein 496 [Homo sapiens]
Length = 587
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 2 PRPASARARCAHPLTCAHCLALPSEMNPVPQMEMQKSPV 40
P A+ + A P+T A CL LPS P ++ PV
Sbjct: 158 PHSDLAKNQDAQPITLAQCLGLPSR----PPSQLSGDPV 192
>gi|169216272 PREDICTED: hypothetical protein [Homo sapiens]
Length = 753
Score = 25.8 bits (55), Expect = 7.7
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 1 MPRPASARARCAHPLTCAHCLALPSEMNPVPQMEMQ-------KSPVFCVAHAGSCRPEL 53
+P P SA +C H + S+++ P PV + + CR
Sbjct: 408 VPVPISASFKCYHQQLLMQLVKYKSQLSLGPGFPTVDQANNNVSEPVTLLRYCCQCRRY- 466
Query: 54 IRPSWLLRSLYESNQDGDLTGFYSFIDTHE 83
W SL +SN+D LT + HE
Sbjct: 467 ----WQTSSLEQSNRDKMLTDSKQWASAHE 492
>gi|169216572 PREDICTED: hypothetical protein [Homo sapiens]
Length = 753
Score = 25.8 bits (55), Expect = 7.7
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 1 MPRPASARARCAHPLTCAHCLALPSEMNPVPQMEMQ-------KSPVFCVAHAGSCRPEL 53
+P P SA +C H + S+++ P PV + + CR
Sbjct: 408 VPVPISASFKCYHQQLLMQLVKYKSQLSLGPGFPTVDQANNNVSEPVTLLRYCCQCRRY- 466
Query: 54 IRPSWLLRSLYESNQDGDLTGFYSFIDTHE 83
W SL +SN+D LT + HE
Sbjct: 467 ----WQTSSLEQSNRDKMLTDSKQWASAHE 492
>gi|193082982 zinc finger protein 837 isoform 1 [Homo sapiens]
Length = 531
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 14 PLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELIRPSWLLRSLYESNQDG 70
P CA C P Q + KSP C + RP I P + LY ++ G
Sbjct: 224 PRPCARC---GKRFRPNQQQQAGKSPPVCPECGQTSRPRPIVPDPPAQRLYACDECG 277
>gi|193082980 zinc finger protein 837 isoform 2 [Homo sapiens]
Length = 531
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 14 PLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELIRPSWLLRSLYESNQDG 70
P CA C P Q + KSP C + RP I P + LY ++ G
Sbjct: 224 PRPCARC---GKRFRPNQQQQAGKSPPVCPECGQTSRPRPIVPDPPAQRLYACDECG 277
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.132 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,884,100
Number of Sequences: 37866
Number of extensions: 211222
Number of successful extensions: 415
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 26
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.