Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239754882
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754882 PREDICTED: hypothetical protein [Homo sapiens]
(150 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754882 PREDICTED: hypothetical protein [Homo sapiens] 305 7e-84
gi|169172506 PREDICTED: hypothetical protein [Homo sapiens] 305 7e-84
gi|169173076 PREDICTED: hypothetical protein [Homo sapiens] 305 7e-84
gi|169169647 PREDICTED: hypothetical protein LOC100128935 [Homo ... 39 0.002
gi|169168704 PREDICTED: hypothetical protein LOC100128935 [Homo ... 38 0.003
gi|239754420 PREDICTED: hypothetical protein [Homo sapiens] 32 0.20
gi|239742965 PREDICTED: hypothetical protein XP_002342706 [Homo ... 32 0.20
gi|13491166 pumilio 1 isoform 2 [Homo sapiens] 31 0.34
gi|66932909 pumilio 1 isoform 1 [Homo sapiens] 31 0.34
gi|169201730 PREDICTED: hypothetical protein [Homo sapiens] 29 1.3
gi|239749864 PREDICTED: hypothetical protein [Homo sapiens] 29 1.3
gi|239744166 PREDICTED: hypothetical protein [Homo sapiens] 29 1.3
gi|169217599 PREDICTED: hypothetical protein [Homo sapiens] 29 1.7
gi|239754599 PREDICTED: hypothetical protein [Homo sapiens] 29 1.7
gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo ... 29 1.7
gi|40317626 thrombospondin 1 precursor [Homo sapiens] 28 2.9
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 28 2.9
gi|88758565 potassium voltage-gated channel, shaker-related subf... 28 3.8
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 28 3.8
gi|40254844 receptor-interacting serine-threonine kinase 3 [Homo... 28 3.8
gi|21218438 GATA zinc finger domain containing 2B [Homo sapiens] 27 5.0
gi|239752864 PREDICTED: hypothetical protein [Homo sapiens] 27 6.5
gi|239752371 PREDICTED: hypothetical protein XP_002348216 [Homo ... 27 6.5
gi|239747416 PREDICTED: hypothetical protein XP_002346693 [Homo ... 27 6.5
gi|194097487 RAN binding protein 3 isoform RANBP3-a [Homo sapiens] 27 6.5
gi|6466466 RAN binding protein 3 isoform RANBP3-d [Homo sapiens] 27 6.5
gi|193083134 melanocortin 1 receptor [Homo sapiens] 27 8.5
gi|239743072 PREDICTED: hypothetical protein [Homo sapiens] 27 8.5
gi|239508718 PREDICTED: hypothetical protein [Homo sapiens] 27 8.5
>gi|239754882 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 305 bits (782), Expect = 7e-84
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MGMAQAESSVKTQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPEL 60
MGMAQAESSVKTQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPEL
Sbjct: 1 MGMAQAESSVKTQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPEL 60
Query: 61 ASRGGGWWPPQGNKAVAAAAKWLKVQPKSGLFLSLGCGRLASTALGLQAACSLSSALTLT 120
ASRGGGWWPPQGNKAVAAAAKWLKVQPKSGLFLSLGCGRLASTALGLQAACSLSSALTLT
Sbjct: 61 ASRGGGWWPPQGNKAVAAAAKWLKVQPKSGLFLSLGCGRLASTALGLQAACSLSSALTLT 120
Query: 121 GAAFAGSSERLCNDPDPIQQRFKRKLVQGH 150
GAAFAGSSERLCNDPDPIQQRFKRKLVQGH
Sbjct: 121 GAAFAGSSERLCNDPDPIQQRFKRKLVQGH 150
>gi|169172506 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 305 bits (782), Expect = 7e-84
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MGMAQAESSVKTQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPEL 60
MGMAQAESSVKTQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPEL
Sbjct: 1 MGMAQAESSVKTQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPEL 60
Query: 61 ASRGGGWWPPQGNKAVAAAAKWLKVQPKSGLFLSLGCGRLASTALGLQAACSLSSALTLT 120
ASRGGGWWPPQGNKAVAAAAKWLKVQPKSGLFLSLGCGRLASTALGLQAACSLSSALTLT
Sbjct: 61 ASRGGGWWPPQGNKAVAAAAKWLKVQPKSGLFLSLGCGRLASTALGLQAACSLSSALTLT 120
Query: 121 GAAFAGSSERLCNDPDPIQQRFKRKLVQGH 150
GAAFAGSSERLCNDPDPIQQRFKRKLVQGH
Sbjct: 121 GAAFAGSSERLCNDPDPIQQRFKRKLVQGH 150
>gi|169173076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 305 bits (782), Expect = 7e-84
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MGMAQAESSVKTQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPEL 60
MGMAQAESSVKTQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPEL
Sbjct: 1 MGMAQAESSVKTQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPEL 60
Query: 61 ASRGGGWWPPQGNKAVAAAAKWLKVQPKSGLFLSLGCGRLASTALGLQAACSLSSALTLT 120
ASRGGGWWPPQGNKAVAAAAKWLKVQPKSGLFLSLGCGRLASTALGLQAACSLSSALTLT
Sbjct: 61 ASRGGGWWPPQGNKAVAAAAKWLKVQPKSGLFLSLGCGRLASTALGLQAACSLSSALTLT 120
Query: 121 GAAFAGSSERLCNDPDPIQQRFKRKLVQGH 150
GAAFAGSSERLCNDPDPIQQRFKRKLVQGH
Sbjct: 121 GAAFAGSSERLCNDPDPIQQRFKRKLVQGH 150
>gi|169169647 PREDICTED: hypothetical protein LOC100128935 [Homo
sapiens]
Length = 284
Score = 38.5 bits (88), Expect = 0.002
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 26 QGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPELASRGGGWWPPQGNKAVAAAAK-WLK 84
+GL + A + C ++R A C + + G G W G++ V+A+ + W+
Sbjct: 120 RGLVAAALMGCRQGGSRRESGARCIRRPAGVTAAPETAGHGLWRHGGHEMVSASDRCWMD 179
Query: 85 VQPKSGLFLSLGCGRLASTALGLQAACSLSSALTLTGAAFAGSSERLCNDPDPIQQ 140
+QPK G R +LG ++CS +A L A +ER + P P+++
Sbjct: 180 IQPKHGSQNERI--RQVLNSLGKISSCSSQAAGRLDAVLRATITERSPSPPGPVEE 233
>gi|169168704 PREDICTED: hypothetical protein LOC100128935 [Homo
sapiens]
Length = 284
Score = 38.1 bits (87), Expect = 0.003
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 26 QGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPELASRGGGWWPPQGNKAVAAAAK-WLK 84
+GL + A + C ++R A C + + G G W G++ V+A+ + W+
Sbjct: 120 RGLVAAALMGCRQGGSRRESGARCIRRPAGVTAAPETAGHGLWRHGGHEMVSASDRCWMD 179
Query: 85 VQPKSGLFLSLGCGRLASTALGLQAACSLSSALTLTGAAFAGSSERLCNDPDPIQQ 140
+QPK G R +LG ++CS +A L A +ER + P P+++
Sbjct: 180 IQPKHGSQNERI--RQVLDSLGKISSCSSQAAGRLDAVLRATITERSPSPPGPVEE 233
>gi|239754420 PREDICTED: hypothetical protein [Homo sapiens]
Length = 105
Score = 32.0 bits (71), Expect = 0.20
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 3 MAQAESSVKTQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPELAS 62
M Q + V+ A+ + ++ Q R+ C RPR + A GP L +
Sbjct: 17 MEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGATPLTA 76
Query: 63 RGGG 66
RGGG
Sbjct: 77 RGGG 80
>gi|239742965 PREDICTED: hypothetical protein XP_002342706 [Homo
sapiens]
Length = 105
Score = 32.0 bits (71), Expect = 0.20
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 3 MAQAESSVKTQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPELAS 62
M Q + V+ A+ + ++ Q R+ C RPR + A GP L +
Sbjct: 17 MEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGATPLTA 76
Query: 63 RGGG 66
RGGG
Sbjct: 77 RGGG 80
>gi|13491166 pumilio 1 isoform 2 [Homo sapiens]
Length = 1186
Score = 31.2 bits (69), Expect = 0.34
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 32 ATVSCVCSSTQRPRPAMCGAQRGPFQPELASRGGGWWPPQGNKAVAAAAKW----LKVQP 87
A V+ +S + G GPF+P + Q N +A+++ + L
Sbjct: 596 AAVAAAAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQQPNNNLASSSFYGNNSLNSNS 655
Query: 88 KSGLFLSLGCGRLASTALGLQAACSLSSALTLTGAAFAGSSERLCN 133
+S S G + A+T+LG ++ SL + L G+A G + N
Sbjct: 656 QSSSLFSQGSAQPANTSLGFGSSSSLGATL---GSALGGFGTAVAN 698
>gi|66932909 pumilio 1 isoform 1 [Homo sapiens]
Length = 1188
Score = 31.2 bits (69), Expect = 0.34
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 32 ATVSCVCSSTQRPRPAMCGAQRGPFQPELASRGGGWWPPQGNKAVAAAAKW----LKVQP 87
A V+ +S + G GPF+P + Q N +A+++ + L
Sbjct: 596 AAVAAAAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQQPNNNLASSSFYGNNSLNSNS 655
Query: 88 KSGLFLSLGCGRLASTALGLQAACSLSSALTLTGAAFAGSSERLCN 133
+S S G + A+T+LG ++ SL + L G+A G + N
Sbjct: 656 QSSSLFSQGSAQPANTSLGFGSSSSLGATL---GSALGGFGTAVAN 698
>gi|169201730 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 29.3 bits (64), Expect = 1.3
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 40 STQRPR-PAMCGAQRGPFQPELASRGGGWWPPQGNKAVAAAAKWLKVQPKSGLFLSLGCG 98
ST R + P + R P QP L SR P+ +K VA L P+ G +
Sbjct: 72 STPRSKTPLAFPSPRLPHQPSL-SRQAVSAVPEIDKEVAEGVPLLSA-PRGGNHSAAAAA 129
Query: 99 RLASTALGLQAACSLSSALTLTGAAFAGSSERLCNDPDP 137
+T + +CS SAL + F G+ + P P
Sbjct: 130 TATATLAASEESCSAVSALRCSQTTFVGAGPGKEHSPGP 168
>gi|239749864 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 29.3 bits (64), Expect = 1.3
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 40 STQRPR-PAMCGAQRGPFQPELASRGGGWWPPQGNKAVAAAAKWLKVQPKSGLFLSLGCG 98
ST R + P + R P QP L SR P+ +K VA L P+ G +
Sbjct: 72 STPRSKTPLAFPSPRLPHQPSL-SRQAVSAVPEIDKEVAEGVPLLSA-PRGGNHSAAAAA 129
Query: 99 RLASTALGLQAACSLSSALTLTGAAFAGSSERLCNDPDP 137
+T + +CS SAL + F G+ + P P
Sbjct: 130 TATATLAASEESCSAVSALRCSQTTFVGAGPGKEHSPGP 168
>gi|239744166 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 29.3 bits (64), Expect = 1.3
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 40 STQRPR-PAMCGAQRGPFQPELASRGGGWWPPQGNKAVAAAAKWLKVQPKSGLFLSLGCG 98
ST R + P + R P QP L SR P+ +K VA L P+ G +
Sbjct: 72 STPRSKTPLAFPSPRLPHQPSL-SRQAVSAVPEIDKEVAEGVPLLSA-PRGGNHSAAAAA 129
Query: 99 RLASTALGLQAACSLSSALTLTGAAFAGSSERLCNDPDP 137
+T + +CS SAL + F G+ + P P
Sbjct: 130 TATATLAASEESCSAVSALRCSQTTFVGAGPGKEHSPGP 168
>gi|169217599 PREDICTED: hypothetical protein [Homo sapiens]
Length = 322
Score = 28.9 bits (63), Expect = 1.7
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 65 GGWWPPQGNKAVAAAAKWLKVQPKSGLFLSLGCGRLASTALGLQAACSLSSAL----TLT 120
G W+PP GN+ K S LFL LG RL G ++S L +
Sbjct: 23 GHWFPPAGNR-----GNLYKPTNTSSLFLPLGPWRLLRGPNGTWRKAFITSPLGTVHRVP 77
Query: 121 GAAFAG--SSERLCNDPDPIQQRFKRK 145
GAA ++E + PDP +R R+
Sbjct: 78 GAASGTEVNAEAIPPPPDPQDERAFRE 104
>gi|239754599 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 28.9 bits (63), Expect = 1.7
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 20 GKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPELASRGGGWWPPQ-GNKAVAA 78
G +K + + A + ++PR C A E + RGGG P + G KAV A
Sbjct: 141 GSRKPRRQKAAAAQAKSLGGGGKKPRRQKCAAAGQKAAAEESRRGGGKKPRRGGQKAVGA 200
Query: 79 AAK 81
AK
Sbjct: 201 GAK 203
>gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo
sapiens]
Length = 351
Score = 28.9 bits (63), Expect = 1.7
Identities = 19/47 (40%), Positives = 21/47 (44%)
Query: 35 SCVCSSTQRPRPAMCGAQRGPFQPELASRGGGWWPPQGNKAVAAAAK 81
S VC S + R R Q SRGGG P+G KA A AK
Sbjct: 128 SRVCRSRPQNRGGGDKKPRRRGQKAAKSRGGGGKKPRGQKAAGAGAK 174
>gi|40317626 thrombospondin 1 precursor [Homo sapiens]
Length = 1170
Score = 28.1 bits (61), Expect = 2.9
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 112 SLSSALTLTGAAFAGSSERLCNDPDPIQQRFK 143
S+ LTGAA GS RL PDP F+
Sbjct: 29 SVFDIFELTGAARKGSGRRLVKGPDPSSPAFR 60
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 28.1 bits (61), Expect = 2.9
Identities = 19/68 (27%), Positives = 25/68 (36%)
Query: 12 TQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPELASRGGGWWPPQ 71
T N S G + L +TAT S+T P A+ P +A+ G PP
Sbjct: 2149 TTNPSSTPGTTPIPPVLTTTATTPAATSNTVTPSSALGTTHTPPVPNTMATTHGRSLPPS 2208
Query: 72 GNKAVAAA 79
V A
Sbjct: 2209 SPHTVRTA 2216
Score = 28.1 bits (61), Expect = 2.9
Identities = 20/68 (29%), Positives = 24/68 (35%)
Query: 12 TQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPELASRGGGWWPPQ 71
T N S G + L +TAT SST P A+ P A+ G PP
Sbjct: 3406 TTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHTPPVPNTTATTHGRSLPPS 3465
Query: 72 GNKAVAAA 79
V A
Sbjct: 3466 SPHTVRTA 3473
>gi|88758565 potassium voltage-gated channel, shaker-related
subfamily, member 3 [Homo sapiens]
Length = 575
Score = 27.7 bits (60), Expect = 3.8
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 57 QPELASRGGGWWPPQGNKAVAAAAKWLKVQPKSGLFLSLGCGRLASTALGLQAACSLSSA 116
+PE+A GG PPQG ++ + P + A G Q C
Sbjct: 63 EPEVADGGGA--PPQGGCGGGGCDRYEPLPP-------------SLPAAGEQDCCGERVV 107
Query: 117 LTLTGAAFAGSSERLCNDPDPIQQRFKRKL 146
+ ++G F + LC P+ + KR++
Sbjct: 108 INISGLRFETQLKTLCQFPETLLGDPKRRM 137
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 27.7 bits (60), Expect = 3.8
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 3 MAQAESSVKTQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMC 49
+A SV+T A D +DQ + AT C S T +PRP C
Sbjct: 1203 LAPGMDSVQTFFAVDDG--PSLDQAVSGLATALCQASFTTQPRPEPC 1247
>gi|40254844 receptor-interacting serine-threonine kinase 3 [Homo
sapiens]
Length = 518
Score = 27.7 bits (60), Expect = 3.8
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 42 QRPRPAMCGAQRGPFQPELASRGGGWWPPQG 72
Q P P G+Q GP PE SR GW+ G
Sbjct: 489 QHPPPV--GSQEGPKDPEAWSRPQGWYNHSG 517
>gi|21218438 GATA zinc finger domain containing 2B [Homo sapiens]
Length = 593
Score = 27.3 bits (59), Expect = 5.0
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 10 VKTQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPELASRGGGWWP 69
V+ QN +G + +T + P PA QRGP +P L
Sbjct: 234 VEPQNLRTLQGHSVIRSATNTTLPHMLMSQRVIAPNPAQLQGQRGPPKPGLVRT----TT 289
Query: 70 PQGNKAVAAAAKWLKVQPKSGLFLSLGCGRLASTALGLQAA 110
P N A+ QP+S S+ C R S+A+ + A
Sbjct: 290 PNMNPAI-------NYQPQSS--SSVPCQRTTSSAIYMNLA 321
>gi|239752864 PREDICTED: hypothetical protein [Homo sapiens]
Length = 386
Score = 26.9 bits (58), Expect = 6.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 42 QRPRPAMCGAQRGPFQPELASRGGGWW 68
QR R + +RGP + ELA G WW
Sbjct: 146 QRGRLSAATWRRGPARAELAGSGRRWW 172
>gi|239752371 PREDICTED: hypothetical protein XP_002348216 [Homo
sapiens]
Length = 96
Score = 26.9 bits (58), Expect = 6.5
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 17 DQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPELASRG----GGWWPPQG 72
D + KKK G R S SS PRPA GP P LA + G PP G
Sbjct: 6 DAKKKKKSFGGRRGR---SLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGG 62
Query: 73 NKAVA 77
+ VA
Sbjct: 63 GRGVA 67
>gi|239747416 PREDICTED: hypothetical protein XP_002346693 [Homo
sapiens]
Length = 386
Score = 26.9 bits (58), Expect = 6.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 42 QRPRPAMCGAQRGPFQPELASRGGGWW 68
QR R + +RGP + ELA G WW
Sbjct: 146 QRGRLSAATWRRGPARAELAGSGRRWW 172
>gi|194097487 RAN binding protein 3 isoform RANBP3-a [Homo sapiens]
Length = 562
Score = 26.9 bits (58), Expect = 6.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 39 SSTQRPRPAMCGAQRGPFQPELASRGGGWWPPQGNK 74
+S P P AQ PF ELA R G P+G +
Sbjct: 71 ASASTPPPPAPEAQLPPFPRELAGRSAGGSSPEGGE 106
>gi|6466466 RAN binding protein 3 isoform RANBP3-d [Homo sapiens]
Length = 567
Score = 26.9 bits (58), Expect = 6.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 39 SSTQRPRPAMCGAQRGPFQPELASRGGGWWPPQGNK 74
+S P P AQ PF ELA R G P+G +
Sbjct: 71 ASASTPPPPAPEAQLPPFPRELAGRSAGGSSPEGGE 106
>gi|193083134 melanocortin 1 receptor [Homo sapiens]
Length = 317
Score = 26.6 bits (57), Expect = 8.5
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 69 PPQGNKAVAAAAKWLKVQPKSGLFLSLGCGRLASTAL 105
P G A A+ L+V GLFLSLG L AL
Sbjct: 22 PQLGLAANQTGARCLEVSISDGLFLSLGLVSLVENAL 58
>gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 26.6 bits (57), Expect = 8.5
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 6 AESSVKTQNASDQEGKKKVDQGL---RSTATVSCVCSSTQRPRPA 47
A SV+ + + + G+K+VD+G S AT + ++ QRP P+
Sbjct: 252 AGPSVRRDSRAARHGEKRVDEGAWTRASRATWTSNINAAQRPSPS 296
>gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 26.6 bits (57), Expect = 8.5
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 6 AESSVKTQNASDQEGKKKVDQGL---RSTATVSCVCSSTQRPRPA 47
A SV+ + + + G+K+VD+G S AT + ++ QRP P+
Sbjct: 252 AGPSVRRDSRAARHGEKRVDEGAWTRASRATWTSNINAAQRPSPS 296
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.127 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,935,257
Number of Sequences: 37866
Number of extensions: 262918
Number of successful extensions: 1006
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 988
Number of HSP's gapped (non-prelim): 34
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.