Guide to the Human Genome
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Name: LOC100127998 Sequence: fasta or formatted (150aa) NCBI GI: 239754882
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {150aa} PREDICTED: hypothetical protein
alt mRNA {150aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         20           4
 C cysteine            4.0          6           1
 D aspartate           2.7          4           1
 E glutamate           2.7          4           1
 F phenylalanine       2.7          4           1
 G glycine            10.7         16           3
 H histidine           0.7          1           1
 I isoleucine          0.7          1           1
 K lysine              6.7         10           3
 L leucine             9.3         14           1
 M methionine          2.0          3           1
 N asparagine          2.0          3           1
 P proline             6.0          9           2
 Q glutamine           8.7         13           2
 R arginine            6.0          9           1
 S serine             10.7         16           2
 T threonine           4.7          7           1
 V valine              4.7          7           1
 W tryptophan          2.0          3           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100127998          1.000   PREDICTED: hypothetical protein 
LOC100127998          1.000   PREDICTED: hypothetical protein 
LOC100128935          0.050   PREDICTED: hypothetical protein LOC100128935 
LOC100128935          0.046   PREDICTED: hypothetical protein LOC100128935 
LOC100293292          0.025   PREDICTED: hypothetical protein 
LOC100287612          0.025   PREDICTED: hypothetical protein XP_002342706 
PUM1                  0.021   pumilio 1 isoform 2 
PUM1                  0.021   pumilio 1 isoform 1 
LOC728475             0.014   PREDICTED: hypothetical protein 
LOC728475             0.014   PREDICTED: hypothetical protein 
LOC728475             0.014   PREDICTED: hypothetical protein 
LOC100133500          0.014   PREDICTED: hypothetical protein 
LOC100292383          0.014   PREDICTED: hypothetical protein 
LOC100292035          0.014   PREDICTED: hypothetical protein XP_002345623 
THBS1                 0.011   thrombospondin 1 precursor 
MUC5B                 0.011   mucin 5, subtype B, tracheobronchial 
KCNA3                 0.011   potassium voltage-gated channel, shaker-related subf...
COL7A1                0.011   alpha 1 type VII collagen precursor 
RIPK3                 0.011   receptor-interacting serine-threonine kinase 3 [Homo...
GATAD2B               0.007   GATA zinc finger domain containing 2B 
LOC100293235          0.007   PREDICTED: hypothetical protein 
LOC100290444          0.007   PREDICTED: hypothetical protein XP_002348216 
LOC100291469          0.007   PREDICTED: hypothetical protein XP_002346693 
RANBP3                0.007   RAN binding protein 3 isoform RANBP3-a 
RANBP3                0.007   RAN binding protein 3 isoform RANBP3-d 
MC1R                  0.007   melanocortin 1 receptor 
LOC100133305          0.007   PREDICTED: hypothetical protein 
LOC100133305          0.007   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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