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Search of human proteins with 239754483
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754483 PREDICTED: similar to FLJ00049 protein [Homo
sapiens]
(177 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754483 PREDICTED: similar to FLJ00049 protein [Homo sapiens] 375 e-105
gi|239749039 PREDICTED: hypothetical protein XP_002346890 [Homo ... 370 e-103
gi|239508708 PREDICTED: similar to hCG1998993 [Homo sapiens] 370 e-103
gi|239743064 PREDICTED: hypothetical protein XP_002342749 [Homo ... 367 e-102
gi|154816198 transcription elongation factor B polypeptide 3C-li... 34 0.058
gi|156938279 transcription elongation factor B polypeptide 3C [H... 34 0.058
gi|122939147 Rho GTPase activating protein 9 isoform 1 [Homo sap... 34 0.076
gi|122939151 Rho GTPase activating protein 9 isoform 2 [Homo sap... 34 0.076
gi|239746558 PREDICTED: hypothetical protein XP_002343788 [Homo ... 33 0.099
gi|239747122 PREDICTED: hypothetical protein XP_002343916 [Homo ... 33 0.17
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 33 0.17
gi|90403598 mesoderm posterior 2 homolog [Homo sapiens] 32 0.22
gi|156416026 zinc finger protein 219 [Homo sapiens] 32 0.22
gi|156415998 zinc finger protein 219 [Homo sapiens] 32 0.22
gi|156415996 zinc finger protein 219 [Homo sapiens] 32 0.22
gi|189181750 human immunodeficiency virus type I enhancer bindin... 32 0.29
gi|116089331 human immunodeficiency virus type I enhancer bindin... 32 0.29
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 31 0.49
gi|20986488 YY1-associated protein isoform 2 [Homo sapiens] 31 0.64
gi|20986490 YY1-associated protein isoform 3 [Homo sapiens] 31 0.64
gi|124248554 melanoma antigen family A, 9 -like [Homo sapiens] 30 0.84
gi|4885473 melanoma antigen family A, 9 [Homo sapiens] 30 0.84
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] 30 0.84
gi|207113133 hypothetical protein LOC729085 [Homo sapiens] 30 0.84
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 30 0.84
gi|54607077 ankyrin repeat domain 57 [Homo sapiens] 30 0.84
gi|148833494 interferon regulatory factor 5 isoform d [Homo sapi... 30 1.1
gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo ... 30 1.1
gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo ... 30 1.1
gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo ... 30 1.1
>gi|239754483 PREDICTED: similar to FLJ00049 protein [Homo sapiens]
Length = 177
Score = 375 bits (964), Expect = e-105
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS
Sbjct: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
Query: 61 ECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
ECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP
Sbjct: 61 ECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
Query: 121 VPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
VPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF
Sbjct: 121 VPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
>gi|239749039 PREDICTED: hypothetical protein XP_002346890 [Homo
sapiens]
Length = 177
Score = 370 bits (951), Expect = e-103
Identities = 175/177 (98%), Positives = 175/177 (98%)
Query: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS
Sbjct: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
Query: 61 ECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
ECWPDWQRGGERKN GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP
Sbjct: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
Query: 121 VPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
VPQGSALRLCPGTPG AHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF
Sbjct: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
>gi|239508708 PREDICTED: similar to hCG1998993 [Homo sapiens]
Length = 177
Score = 370 bits (951), Expect = e-103
Identities = 175/177 (98%), Positives = 175/177 (98%)
Query: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS
Sbjct: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
Query: 61 ECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
ECWPDWQRGGERKN GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP
Sbjct: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
Query: 121 VPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
VPQGSALRLCPGTPG AHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF
Sbjct: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
>gi|239743064 PREDICTED: hypothetical protein XP_002342749 [Homo
sapiens]
Length = 177
Score = 367 bits (941), Expect = e-102
Identities = 174/177 (98%), Positives = 174/177 (98%)
Query: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRS GDGSLVRLS
Sbjct: 1 MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSLGDGSLVRLS 60
Query: 61 ECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
ECWPDWQRGGERKN GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP
Sbjct: 61 ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
Query: 121 VPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
VPQGSALRLCPGTPG AHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF
Sbjct: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
>gi|154816198 transcription elongation factor B polypeptide 3C-like
[Homo sapiens]
Length = 546
Score = 34.3 bits (77), Expect = 0.058
Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 21/141 (14%)
Query: 21 PQGPREEQSKR------EERVEPYVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKN 74
PQ P E S++ +ER + + + +A RSP P+ +R R
Sbjct: 87 PQDPEESASRQRFGEALQEREKAWGFPE-NATAPRSPSHS---------PEHRRTARRTP 136
Query: 75 SGSEEK-PLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGT 133
G + P PS P +P+ ++ P T P P+P+G +
Sbjct: 137 PGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPT----RTAPLPMPEGPEPAVPGEQ 192
Query: 134 PGRAHVGASRSLPAMRMRCPG 154
PGR H A++ P + C G
Sbjct: 193 PGRGHAHAAQGGPLLGQGCQG 213
>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
sapiens]
Length = 546
Score = 34.3 bits (77), Expect = 0.058
Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 21/141 (14%)
Query: 21 PQGPREEQSKR------EERVEPYVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKN 74
PQ P E S++ +ER + + + +A RSP P+ +R R
Sbjct: 87 PQDPEESASRQRFGEALQEREKAWGFPE-NATAPRSPSHS---------PEHRRTARRTP 136
Query: 75 SGSEEK-PLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGT 133
G + P PS P +P+ ++ P T P P+P+G +
Sbjct: 137 PGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPT----RTAPLPMPEGPEPAVPGEQ 192
Query: 134 PGRAHVGASRSLPAMRMRCPG 154
PGR H A++ P + C G
Sbjct: 193 PGRGHAHAAQGGPLLGQGCQG 213
>gi|122939147 Rho GTPase activating protein 9 isoform 1 [Homo
sapiens]
Length = 731
Score = 33.9 bits (76), Expect = 0.076
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Query: 38 YVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKNSGSEEKPL-QPSAWPGINPLQPQ 96
Y D G S + GD L+ L + DW R + S +P+ P+A+ +
Sbjct: 35 YTGAD-GQQVSLAEGDRFLL-LRKTNSDWWLA-RRLEAPSTSRPIFVPAAY------MIE 85
Query: 97 EVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTS 156
E +P Q+ +P LW P+ + GS L P RA + + P R C S
Sbjct: 86 ESIPSQSPTTVIPGQLLWTPGPK-LFHGSLEELSQALPSRAQASSEQPPPLPRKMCRSVS 144
Query: 157 LLQLGP 162
L P
Sbjct: 145 TDNLSP 150
>gi|122939151 Rho GTPase activating protein 9 isoform 2 [Homo
sapiens]
Length = 640
Score = 33.9 bits (76), Expect = 0.076
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Query: 38 YVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKNSGSEEKPL-QPSAWPGINPLQPQ 96
Y D G S + GD L+ L + DW R + S +P+ P+A+ +
Sbjct: 35 YTGAD-GQQVSLAEGDRFLL-LRKTNSDWWLA-RRLEAPSTSRPIFVPAAY------MIE 85
Query: 97 EVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTS 156
E +P Q+ +P LW P+ + GS L P RA + + P R C S
Sbjct: 86 ESIPSQSPTTVIPGQLLWTPGPK-LFHGSLEELSQALPSRAQASSEQPPPLPRKMCRSVS 144
Query: 157 LLQLGP 162
L P
Sbjct: 145 TDNLSP 150
>gi|239746558 PREDICTED: hypothetical protein XP_002343788 [Homo
sapiens]
Length = 616
Score = 33.5 bits (75), Expect = 0.099
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 105 NKAVPELCLWMTEPRPVPQGSALRL----CPGTPGRAHVGASRSLPAMRMRCPG 154
N +P LW RPVP SAL L PG GR+ G S +CPG
Sbjct: 27 NFLLPVRRLWPCSRRPVPSSSALPLLHAFAPGPQGRSPAGISTEPVPPPPQCPG 80
>gi|239747122 PREDICTED: hypothetical protein XP_002343916 [Homo
sapiens]
Length = 598
Score = 32.7 bits (73), Expect = 0.17
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 100 PPQAANKAVPELCLWMTEPRPVPQGSALRL----CPGTPGRAHVGASRSLPAMRMRCPG 154
PP A + + L W RPVP SAL L PG GR+ G S +CPG
Sbjct: 6 PPLALSNQLRRL--WPCSRRPVPSSSALPLLHAFAPGPQGRSPAGISTEPVPPPPQCPG 62
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 32.7 bits (73), Expect = 0.17
Identities = 32/99 (32%), Positives = 35/99 (35%), Gaps = 29/99 (29%)
Query: 76 GSEEKPLQPSAW--PGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGT 133
GS P+ P PGI P P +PP AA P GT
Sbjct: 241 GSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPS--------------------AGT 280
Query: 134 PGRAHVGASRS----LPAMRMRCPGTSLLQL---GPVGL 165
PG H G S P M PG S +QL GP GL
Sbjct: 281 PGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGL 319
>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
Length = 397
Score = 32.3 bits (72), Expect = 0.22
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 91 NPLQPQEVVPPQAANKAV-------PELCLWMTEPRPVPQGSALRLCPGTPGRAHVGASR 143
NP P P AV PE CL + P +P S RL P TPGR ++
Sbjct: 289 NPPVPWTAAPATLELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSAE 348
Query: 144 SLPAMRMRCPGTS 156
+P + PG +
Sbjct: 349 VVPNSEDQGPGAA 361
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 32.3 bits (72), Expect = 0.22
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 76 GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPG 135
G+ E+PL +A P QPQ PPQ ++VP+ EP P P+ R TP
Sbjct: 213 GAPERPL--AATSAAPPPQPQPQPPPQPEPRSVPQ-----PEPEPEPE----REATPTPA 261
Query: 136 RAHVGASRSLPAMRMRCPGTSLLQ 159
A + P R + G S Q
Sbjct: 262 PAAPEEPPAPPEFRCQVCGQSFTQ 285
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 32.3 bits (72), Expect = 0.22
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 76 GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPG 135
G+ E+PL +A P QPQ PPQ ++VP+ EP P P+ R TP
Sbjct: 213 GAPERPL--AATSAAPPPQPQPQPPPQPEPRSVPQ-----PEPEPEPE----REATPTPA 261
Query: 136 RAHVGASRSLPAMRMRCPGTSLLQ 159
A + P R + G S Q
Sbjct: 262 PAAPEEPPAPPEFRCQVCGQSFTQ 285
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 32.3 bits (72), Expect = 0.22
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 76 GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPG 135
G+ E+PL +A P QPQ PPQ ++VP+ EP P P+ R TP
Sbjct: 213 GAPERPL--AATSAAPPPQPQPQPPPQPEPRSVPQ-----PEPEPEPE----REATPTPA 261
Query: 136 RAHVGASRSLPAMRMRCPGTSLLQ 159
A + P R + G S Q
Sbjct: 262 PAAPEEPPAPPEFRCQVCGQSFTQ 285
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 32.0 bits (71), Expect = 0.29
Identities = 31/94 (32%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 77 SEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPGR 136
S +P PS G P P N + P+ C P PQ SA P PG
Sbjct: 1964 SPRRPWSPSKEAGSRP--PLARKHSLTKNDSSPQRC----SPAREPQASA----PSPPG- 2012
Query: 137 AHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSR 170
HV R + A+ G+ LQL P+ LC L R
Sbjct: 2013 LHVDPGRGMGALPC---GSPRLQLSPLTLCPLGR 2043
Score = 30.0 bits (66), Expect = 1.1
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 21 PQGPREEQSKREERVEPYVACDIGLSAS----RSPGDGSLVRLSECWPDWQRG--GERKN 74
PQG R QS P + SA+ RS G L S +P R GE +
Sbjct: 2318 PQGRRAAQSWSPRLESPRAPTNPEPSATPPLDRSSSVGCLAEASARFPARTRNLSGEPRT 2377
Query: 75 SGSEEKPLQPSAWPGINPLQPQEVVPPQA 103
KP S P +P QP++ VPP A
Sbjct: 2378 RQDSPKP-SGSGEPRAHPHQPEDRVPPNA 2405
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 32.0 bits (71), Expect = 0.29
Identities = 31/94 (32%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 77 SEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPGR 136
S +P PS G P P N + P+ C P PQ SA P PG
Sbjct: 1964 SPRRPWSPSKEAGSRP--PLARKHSLTKNDSSPQRC----SPAREPQASA----PSPPG- 2012
Query: 137 AHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSR 170
HV R + A+ G+ LQL P+ LC L R
Sbjct: 2013 LHVDPGRGMGALPC---GSPRLQLSPLTLCPLGR 2043
Score = 30.0 bits (66), Expect = 1.1
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 21 PQGPREEQSKREERVEPYVACDIGLSAS----RSPGDGSLVRLSECWPDWQRG--GERKN 74
PQG R QS P + SA+ RS G L S +P R GE +
Sbjct: 2319 PQGRRAAQSWSPRLESPRAPTNPEPSATPPLDRSSSVGCLAEASARFPARTRNLSGEPRT 2378
Query: 75 SGSEEKPLQPSAWPGINPLQPQEVVPPQA 103
KP S P +P QP++ VPP A
Sbjct: 2379 RQDSPKP-SGSGEPRAHPHQPEDRVPPNA 2406
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 31.2 bits (69), Expect = 0.49
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 84 PSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPR-------PVPQGSALRLCPGTPGR 136
PSA P P Q + P +A++A+ M P+ P P + L + +PG
Sbjct: 1560 PSA-PNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPGA 1618
Query: 137 AHVGASRSLPAMRM---RCPGTSLLQLGPV 163
A V AS P M PGTSL PV
Sbjct: 1619 APVLASSQTPVPVMAPSSTPGTSLASASPV 1648
>gi|20986488 YY1-associated protein isoform 2 [Homo sapiens]
Length = 796
Score = 30.8 bits (68), Expect = 0.64
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 54 GSLVRLSECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCL 113
G +++L + + R+ S KPL P + P P Q+ + P +
Sbjct: 433 GVVLKLKPVADRFPKKAWRQKRSSVLKPLLIQPSPSLQPSFNPGKTPAQSTHSEAPPSKM 492
Query: 114 WMTEPRPVPQGSALRLCPGTP-----GRAHVGASRSLPAM 148
+ P P+ + L+ PG P G + +LPAM
Sbjct: 493 VLRIPHPIQPATVLQTVPGVPPLGVSGGESFESPAALPAM 532
>gi|20986490 YY1-associated protein isoform 3 [Homo sapiens]
Length = 750
Score = 30.8 bits (68), Expect = 0.64
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 54 GSLVRLSECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCL 113
G +++L + + R+ S KPL P + P P Q+ + P +
Sbjct: 387 GVVLKLKPVADRFPKKAWRQKRSSVLKPLLIQPSPSLQPSFNPGKTPAQSTHSEAPPSKM 446
Query: 114 WMTEPRPVPQGSALRLCPGTP-----GRAHVGASRSLPAM 148
+ P P+ + L+ PG P G + +LPAM
Sbjct: 447 VLRIPHPIQPATVLQTVPGVPPLGVSGGESFESPAALPAM 486
>gi|124248554 melanoma antigen family A, 9 -like [Homo sapiens]
Length = 315
Score = 30.4 bits (67), Expect = 0.84
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 7 DLGQQGR-LGLT-REFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLSECWP 64
DL QG LGL + P G EE + + E V+ S +SP G+ +S +
Sbjct: 15 DLEAQGEDLGLMGAQEPTGEEEETTSSSDSKEEEVSAAGSSSPPQSPQGGASSSISVYYT 74
Query: 65 DWQRGGERKNSGSEEKP 81
W + E +S EE+P
Sbjct: 75 LWSQFDEGSSSQEEEEP 91
>gi|4885473 melanoma antigen family A, 9 [Homo sapiens]
Length = 315
Score = 30.4 bits (67), Expect = 0.84
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 7 DLGQQGR-LGLT-REFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLSECWP 64
DL QG LGL + P G EE + + E V+ S +SP G+ +S +
Sbjct: 15 DLEAQGEDLGLMGAQEPTGEEEETTSSSDSKEEEVSAAGSSSPPQSPQGGASSSISVYYT 74
Query: 65 DWQRGGERKNSGSEEKP 81
W + E +S EE+P
Sbjct: 75 LWSQFDEGSSSQEEEEP 91
>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
Length = 1249
Score = 30.4 bits (67), Expect = 0.84
Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 24/98 (24%)
Query: 23 GPREEQSKREERVEPYVACDIGLSAS-------RSPGDGSLVRLSECWPDWQRGGERKNS 75
GP ++ + EE P A D L S S G G+L R RG K +
Sbjct: 1167 GPGGDEDEDEEDTAPESALDTSLDKSFSEDAVTDSSGSGTLPRA--------RGRASKGT 1218
Query: 76 GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCL 113
G K P + QE VPP + + +LC+
Sbjct: 1219 GKRRKK---------RPSRSQEEVPPDSDDNKTKKLCV 1247
>gi|207113133 hypothetical protein LOC729085 [Homo sapiens]
Length = 575
Score = 30.4 bits (67), Expect = 0.84
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 81 PLQPSAWPGINPLQPQEVVPPQAAN----------KAVPELCLWMTEPRPVPQGSALRLC 130
P +PSA P P++PQ V A + + + W + R +P+ S L
Sbjct: 35 PQRPSAGPDPGPMEPQGVTGAPATHIRQALSSSRRQRARNMGFWRS--RALPRNSILVCA 92
Query: 131 PGTPGRAHVGASRSLPAMRMRCPG 154
RA V SR P +R PG
Sbjct: 93 EEQGHRARVDRSRESPGGDLRHPG 116
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 30.4 bits (67), Expect = 0.84
Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 21/134 (15%)
Query: 37 PYVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQ 96
P + D+GL+ + SPG + + +N GS E P P + ++ +
Sbjct: 412 PLASADLGLAPTPSPGLDRKALAEATNGEARAEPLAQNGGSSEPPAAPRS------IKVE 465
Query: 97 EVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTS 156
V P+AA P P PQ + P +P A V A S P PG+S
Sbjct: 466 AVEEPEAAPILGP--------GEPGPQAPSRTPSPRSPAPARVKAELSSPT-----PGSS 512
Query: 157 LL--QLGPVGLCLL 168
+ +LG G L
Sbjct: 513 PVPGELGLAGALFL 526
>gi|54607077 ankyrin repeat domain 57 [Homo sapiens]
Length = 525
Score = 30.4 bits (67), Expect = 0.84
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 19 EFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKNSGSE 78
E P GP +++ +R+ A + R G+G + WP G RKNS +
Sbjct: 104 EAPDGPAGPEAR--DRLPDAAAPESLPGQGRELGEGEPPAPAH-WPPLSAGARRKNSRRD 160
Query: 79 EKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQ-------GSALRL-- 129
+PL + PG P + E+ P + T RP Q GS+ +L
Sbjct: 161 VQPLPRTPAPG--PSEDLELPPHGCEEADRGSSLVGATAQRPARQNLRDLVMGSSPQLKR 218
Query: 130 --CPG--TPGRAHVG 140
CPG +PG + G
Sbjct: 219 SVCPGGSSPGSSSGG 233
>gi|148833494 interferon regulatory factor 5 isoform d [Homo
sapiens]
Length = 514
Score = 30.0 bits (66), Expect = 1.1
Identities = 23/103 (22%), Positives = 39/103 (37%)
Query: 20 FPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKNSGSEE 79
F G EE+ + +R+ P ++ + + SL++ WP + + +
Sbjct: 138 FGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTPYSLLKEDVKWPPTLQPPTLRPPTLQP 197
Query: 80 KPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVP 122
LQP G P + PP EL + EP P+P
Sbjct: 198 PTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP 240
>gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo
sapiens]
Length = 274
Score = 30.0 bits (66), Expect = 1.1
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 20/74 (27%)
Query: 93 LQPQEVVPPQAANKAVP---------ELCLWM-----TEPRPVPQGSA-LRLCPGTPGRA 137
L+PQE PP AA +A P LCL + RP+PQ A +RLC T A
Sbjct: 127 LEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCIPT---A 183
Query: 138 HVGASRSLPAMRMR 151
H G + +P R+R
Sbjct: 184 HKG--QRMPLYRIR 195
>gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo
sapiens]
Length = 274
Score = 30.0 bits (66), Expect = 1.1
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 20/74 (27%)
Query: 93 LQPQEVVPPQAANKAVP---------ELCLWM-----TEPRPVPQGSA-LRLCPGTPGRA 137
L+PQE PP AA +A P LCL + RP+PQ A +RLC T A
Sbjct: 127 LEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCIPT---A 183
Query: 138 HVGASRSLPAMRMR 151
H G + +P R+R
Sbjct: 184 HKG--QRMPLYRIR 195
>gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo
sapiens]
Length = 274
Score = 30.0 bits (66), Expect = 1.1
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 20/74 (27%)
Query: 93 LQPQEVVPPQAANKAVP---------ELCLWM-----TEPRPVPQGSA-LRLCPGTPGRA 137
L+PQE PP AA +A P LCL + RP+PQ A +RLC T A
Sbjct: 127 LEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCIPT---A 183
Query: 138 HVGASRSLPAMRMR 151
H G + +P R+R
Sbjct: 184 HKG--QRMPLYRIR 195
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,049,073
Number of Sequences: 37866
Number of extensions: 525064
Number of successful extensions: 1858
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 1802
Number of HSP's gapped (non-prelim): 133
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.