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Search of human proteins with 239754243
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754243 PREDICTED: hypothetical protein [Homo sapiens]
(251 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754243 PREDICTED: hypothetical protein [Homo sapiens] 501 e-142
gi|239748775 PREDICTED: hypothetical protein [Homo sapiens] 501 e-142
gi|239742818 PREDICTED: hypothetical protein [Homo sapiens] 501 e-142
gi|9506663 ring finger protein 186 [Homo sapiens] 35 0.062
gi|37595553 ring finger protein 111 [Homo sapiens] 32 0.40
gi|239755210 PREDICTED: hypothetical protein [Homo sapiens] 32 0.52
gi|239749699 PREDICTED: hypothetical protein XP_002347122 [Homo ... 32 0.52
gi|239743965 PREDICTED: hypothetical protein XP_002344250 [Homo ... 32 0.52
gi|122937480 Ras association (RalGDS/AF-6) domain family (N-term... 31 1.2
gi|110578649 cache domain containing 1 [Homo sapiens] 30 1.5
gi|57242757 calsyntenin 1 isoform 1 [Homo sapiens] 30 2.0
gi|57242755 calsyntenin 1 isoform 2 [Homo sapiens] 30 2.0
gi|239752455 PREDICTED: hypothetical protein XP_002348281 [Homo ... 30 2.6
gi|239749048 PREDICTED: hypothetical protein XP_002346892 [Homo ... 29 4.4
gi|239743075 PREDICTED: hypothetical protein XP_002342752 [Homo ... 29 4.4
gi|239508721 PREDICTED: hypothetical protein [Homo sapiens] 29 4.4
gi|149944548 neurobeachin-like 2 [Homo sapiens] 28 5.8
gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Ho... 28 7.6
gi|239756319 PREDICTED: hypothetical protein [Homo sapiens] 28 7.6
gi|239750846 PREDICTED: hypothetical protein [Homo sapiens] 28 7.6
gi|239745208 PREDICTED: hypothetical protein XP_002343389 [Homo ... 28 7.6
gi|24797065 zinc finger protein 212 [Homo sapiens] 28 7.6
gi|40789306 zinc finger protein 365 isoform C [Homo sapiens] 28 9.9
>gi|239754243 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 501 bits (1291), Expect = e-142
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MMAMFCHSPVWLDLLMVSTTHKAYRQSSKVAAMVRGRPSHVRRSSWSWKAWRTACIILMV 60
MMAMFCHSPVWLDLLMVSTTHKAYRQSSKVAAMVRGRPSHVRRSSWSWKAWRTACIILMV
Sbjct: 1 MMAMFCHSPVWLDLLMVSTTHKAYRQSSKVAAMVRGRPSHVRRSSWSWKAWRTACIILMV 60
Query: 61 PRSDILLELAGHVEVEGDGAAHPALQHHLEGAEVIAGDLSDALDVVSLLHEGLEQPVDLD 120
PRSDILLELAGHVEVEGDGAAHPALQHHLEGAEVIAGDLSDALDVVSLLHEGLEQPVDLD
Sbjct: 61 PRSDILLELAGHVEVEGDGAAHPALQHHLEGAEVIAGDLSDALDVVSLLHEGLEQPVDLD 120
Query: 121 GLLAGEEGEQVDDVGAHGVQAAAAHQVVAAPVVLLAQQAAAVHLHLTHQRLAHVALLDQL 180
GLLAGEEGEQVDDVGAHGVQAAAAHQVVAAPVVLLAQQAAAVHLHLTHQRLAHVALLDQL
Sbjct: 121 GLLAGEEGEQVDDVGAHGVQAAAAHQVVAAPVVLLAQQAAAVHLHLTHQRLAHVALLDQL 180
Query: 181 LHAHESRQEAQHVAHDAHELGVVVGGRGHAESVQRRGRAVADDVLADACGVLTAICLVRG 240
LHAHESRQEAQHVAHDAHELGVVVGGRGHAESVQRRGRAVADDVLADACGVLTAICLVRG
Sbjct: 181 LHAHESRQEAQHVAHDAHELGVVVGGRGHAESVQRRGRAVADDVLADACGVLTAICLVRG 240
Query: 241 GGRLMHTKSTS 251
GGRLMHTKSTS
Sbjct: 241 GGRLMHTKSTS 251
>gi|239748775 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 501 bits (1291), Expect = e-142
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MMAMFCHSPVWLDLLMVSTTHKAYRQSSKVAAMVRGRPSHVRRSSWSWKAWRTACIILMV 60
MMAMFCHSPVWLDLLMVSTTHKAYRQSSKVAAMVRGRPSHVRRSSWSWKAWRTACIILMV
Sbjct: 1 MMAMFCHSPVWLDLLMVSTTHKAYRQSSKVAAMVRGRPSHVRRSSWSWKAWRTACIILMV 60
Query: 61 PRSDILLELAGHVEVEGDGAAHPALQHHLEGAEVIAGDLSDALDVVSLLHEGLEQPVDLD 120
PRSDILLELAGHVEVEGDGAAHPALQHHLEGAEVIAGDLSDALDVVSLLHEGLEQPVDLD
Sbjct: 61 PRSDILLELAGHVEVEGDGAAHPALQHHLEGAEVIAGDLSDALDVVSLLHEGLEQPVDLD 120
Query: 121 GLLAGEEGEQVDDVGAHGVQAAAAHQVVAAPVVLLAQQAAAVHLHLTHQRLAHVALLDQL 180
GLLAGEEGEQVDDVGAHGVQAAAAHQVVAAPVVLLAQQAAAVHLHLTHQRLAHVALLDQL
Sbjct: 121 GLLAGEEGEQVDDVGAHGVQAAAAHQVVAAPVVLLAQQAAAVHLHLTHQRLAHVALLDQL 180
Query: 181 LHAHESRQEAQHVAHDAHELGVVVGGRGHAESVQRRGRAVADDVLADACGVLTAICLVRG 240
LHAHESRQEAQHVAHDAHELGVVVGGRGHAESVQRRGRAVADDVLADACGVLTAICLVRG
Sbjct: 181 LHAHESRQEAQHVAHDAHELGVVVGGRGHAESVQRRGRAVADDVLADACGVLTAICLVRG 240
Query: 241 GGRLMHTKSTS 251
GGRLMHTKSTS
Sbjct: 241 GGRLMHTKSTS 251
>gi|239742818 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 501 bits (1291), Expect = e-142
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MMAMFCHSPVWLDLLMVSTTHKAYRQSSKVAAMVRGRPSHVRRSSWSWKAWRTACIILMV 60
MMAMFCHSPVWLDLLMVSTTHKAYRQSSKVAAMVRGRPSHVRRSSWSWKAWRTACIILMV
Sbjct: 1 MMAMFCHSPVWLDLLMVSTTHKAYRQSSKVAAMVRGRPSHVRRSSWSWKAWRTACIILMV 60
Query: 61 PRSDILLELAGHVEVEGDGAAHPALQHHLEGAEVIAGDLSDALDVVSLLHEGLEQPVDLD 120
PRSDILLELAGHVEVEGDGAAHPALQHHLEGAEVIAGDLSDALDVVSLLHEGLEQPVDLD
Sbjct: 61 PRSDILLELAGHVEVEGDGAAHPALQHHLEGAEVIAGDLSDALDVVSLLHEGLEQPVDLD 120
Query: 121 GLLAGEEGEQVDDVGAHGVQAAAAHQVVAAPVVLLAQQAAAVHLHLTHQRLAHVALLDQL 180
GLLAGEEGEQVDDVGAHGVQAAAAHQVVAAPVVLLAQQAAAVHLHLTHQRLAHVALLDQL
Sbjct: 121 GLLAGEEGEQVDDVGAHGVQAAAAHQVVAAPVVLLAQQAAAVHLHLTHQRLAHVALLDQL 180
Query: 181 LHAHESRQEAQHVAHDAHELGVVVGGRGHAESVQRRGRAVADDVLADACGVLTAICLVRG 240
LHAHESRQEAQHVAHDAHELGVVVGGRGHAESVQRRGRAVADDVLADACGVLTAICLVRG
Sbjct: 181 LHAHESRQEAQHVAHDAHELGVVVGGRGHAESVQRRGRAVADDVLADACGVLTAICLVRG 240
Query: 241 GGRLMHTKSTS 251
GGRLMHTKSTS
Sbjct: 241 GGRLMHTKSTS 251
>gi|9506663 ring finger protein 186 [Homo sapiens]
Length = 227
Score = 35.0 bits (79), Expect = 0.062
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 89 LEGAEVIAGDLSDALDVVSLLHEGLEQPVDLDG---LLAGEEGEQVDDVGAHGVQA--AA 143
L E + G L+ VSL +GL P DL L GE+G+ D+V A+ V A A
Sbjct: 99 LRDHEAVVGQLAQPCTEVSLCPQGLVDPADLAAGHPSLVGEDGQ--DEVSANHVAARRLA 156
Query: 144 AHQVVAAPVVLL 155
AH ++ A +++L
Sbjct: 157 AHLLLLALLIIL 168
>gi|37595553 ring finger protein 111 [Homo sapiens]
Length = 986
Score = 32.3 bits (72), Expect = 0.40
Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 130 QVDDVGAHGVQA--------AAAHQVVAAPVVLLAQQAAAVHLHL--THQRLAH----VA 175
QVD V H V A A +H V P LA AA + HL THQ ++H A
Sbjct: 680 QVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLASTAAPIPQHLPPTHQPISHHIPATA 739
Query: 176 LLDQLLHAHESRQEAQ 191
Q LH HE Q +
Sbjct: 740 PPAQRLHPHEVMQRME 755
>gi|239755210 PREDICTED: hypothetical protein [Homo sapiens]
Length = 241
Score = 32.0 bits (71), Expect = 0.52
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 89 LEGAEVIAGDLSDALDVVSLLHEGLEQPVDLDGL---LAGEEGEQVDDV--GAHG---VQ 140
L G + L+ L VV LHE + + V+L L + E G + + AHG V
Sbjct: 115 LHGVPELQRVLALHLAVVLGLHEAVLELVNLQKLQVTVPHERGALLLTLVRQAHGQVVVL 174
Query: 141 AAAAHQVVAAPVVLLAQQAAAVHLHLTHQRLAHVALLDQLLHAHESRQEAQHVAHDAHEL 200
AA ++ AA + LL + + L L Q + H LLD+++ + R + H+ H+L
Sbjct: 175 LLAALELAAAGLALLLEPLHTL-LVLAQQAVLHPQLLDEVIFGAQQRGQVLHLLLQLHDL 233
>gi|239749699 PREDICTED: hypothetical protein XP_002347122 [Homo
sapiens]
Length = 241
Score = 32.0 bits (71), Expect = 0.52
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 89 LEGAEVIAGDLSDALDVVSLLHEGLEQPVDLDGL---LAGEEGEQVDDV--GAHG---VQ 140
L G + L+ L VV LHE + + V+L L + E G + + AHG V
Sbjct: 115 LHGVPELQRVLALHLAVVLGLHEAVLELVNLQKLQVTVPHERGALLLTLVRQAHGQVVVL 174
Query: 141 AAAAHQVVAAPVVLLAQQAAAVHLHLTHQRLAHVALLDQLLHAHESRQEAQHVAHDAHEL 200
AA ++ AA + LL + + L L Q + H LLD+++ + R + H+ H+L
Sbjct: 175 LLAALELAAAGLALLLEPLHTL-LVLAQQAVLHPQLLDEVIFGAQQRGQVLHLLLQLHDL 233
>gi|239743965 PREDICTED: hypothetical protein XP_002344250 [Homo
sapiens]
Length = 241
Score = 32.0 bits (71), Expect = 0.52
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 89 LEGAEVIAGDLSDALDVVSLLHEGLEQPVDLDGL---LAGEEGEQVDDV--GAHG---VQ 140
L G + L+ L VV LHE + + V+L L + E G + + AHG V
Sbjct: 115 LHGVPELQRVLALHLAVVLGLHEAVLELVNLQKLQVTVPHERGALLLTLVRQAHGQVVVL 174
Query: 141 AAAAHQVVAAPVVLLAQQAAAVHLHLTHQRLAHVALLDQLLHAHESRQEAQHVAHDAHEL 200
AA ++ AA + LL + + L L Q + H LLD+++ + R + H+ H+L
Sbjct: 175 LLAALELAAAGLALLLEPLHTL-LVLAQQAVLHPQLLDEVIFGAQQRGQVLHLLLQLHDL 233
>gi|122937480 Ras association (RalGDS/AF-6) domain family
(N-terminal) member 10 [Homo sapiens]
Length = 615
Score = 30.8 bits (68), Expect = 1.2
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 18/73 (24%)
Query: 117 VDLDGLLAGEEGEQVDDVGAHGVQAAAAHQVVAAPVVLLAQQAAAVH---------LHLT 167
++LDG GEE E+V AA A + AAP + QAAA+ L L
Sbjct: 391 IELDGSRPGEEPEEV---------AAEAEEAAAAPPLAGEAQAAALEELARRCDDLLRLQ 441
Query: 168 HQRLAHVALLDQL 180
QR+ LL++L
Sbjct: 442 EQRVQQEELLERL 454
>gi|110578649 cache domain containing 1 [Homo sapiens]
Length = 1223
Score = 30.4 bits (67), Expect = 1.5
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 22/120 (18%)
Query: 121 GLLAGEEGEQVDDVGAHGVQAAAAHQVVAAP-------------VVLLAQQAAAVHLH-L 166
G + G + VDD+GA G + + + +AP V++LA A +H
Sbjct: 1014 GGIVGAKSPYVDDMGAIGDEVITLNMIKSAPVGPVAGGIMGCIMVLVLAVYAYRHQIHRR 1073
Query: 167 THQRLAHVALLDQLLHAHESRQEAQHVAHDAHE-LGVVVGGR-------GHAESVQRRGR 218
+HQ ++ +A + + + D+HE G++ R HA S +RR R
Sbjct: 1074 SHQHMSPLAAQEMSVRMSNLENDRDERDDDSHEDRGIISNTRFIAAVIERHAHSPERRRR 1133
>gi|57242757 calsyntenin 1 isoform 1 [Homo sapiens]
Length = 981
Score = 30.0 bits (66), Expect = 2.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 57 ILMVPRSDILLELAGHVEVEGDGAAHPALQHHLEGAEVI 95
+ + P I+ + VE EGDGA P +Q L E++
Sbjct: 676 VFLFPELRIISTITREVEPEGDGAEDPTVQESLVSEEIV 714
>gi|57242755 calsyntenin 1 isoform 2 [Homo sapiens]
Length = 971
Score = 30.0 bits (66), Expect = 2.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 57 ILMVPRSDILLELAGHVEVEGDGAAHPALQHHLEGAEVI 95
+ + P I+ + VE EGDGA P +Q L E++
Sbjct: 666 VFLFPELRIISTITREVEPEGDGAEDPTVQESLVSEEIV 704
>gi|239752455 PREDICTED: hypothetical protein XP_002348281 [Homo
sapiens]
Length = 241
Score = 29.6 bits (65), Expect = 2.6
Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 136 AHGVQAAAAHQVVAAPVVLLAQQAAAVHLHLTHQRLAHVALLDQLLHAHESRQEAQHVAH 195
+HGV QVV VV L Q V L D L A Q A + +
Sbjct: 74 SHGVGLLGPRQVVLLAVVRLTQLEEVVQTQ---------ELADALPDAAAGHQAAGRIVY 124
Query: 196 DAHELGVVVGGRGHAESVQRRGRAVADDVL 225
+ + VV GG+ GR A VL
Sbjct: 125 EQQLVDVVHGGQAVGTHAHAGGRVAASVVL 154
>gi|239749048 PREDICTED: hypothetical protein XP_002346892 [Homo
sapiens]
Length = 401
Score = 28.9 bits (63), Expect = 4.4
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 16/127 (12%)
Query: 54 ACIILMVPRSDILLELAGHVEVEGDGAAHPALQHHLEGAEVIAGDLSDALDVVSLLHEGL 113
A +++ D ++ GHV V GD P A+V DA+DV +H +
Sbjct: 129 AVALVLEGEGDERVDAPGHVAVHGDLVGRPR-------AQVRVALTGDAVDVDLRVHGDV 181
Query: 114 EQPVDLDGLLAGEEGEQVDDVGAHGVQAAAAHQVVAAPVVLLAQQAAAV---HLHLTHQR 170
P+ G E G+ V +GA V A VV+ + AV HL L
Sbjct: 182 HAPLLGGGHRLREAGQAV--LGAAEVAPVRLGLQRPATVVVRHDEETAVGTGHLALA--- 236
Query: 171 LAHVALL 177
HVA+L
Sbjct: 237 -GHVAVL 242
>gi|239743075 PREDICTED: hypothetical protein XP_002342752 [Homo
sapiens]
Length = 401
Score = 28.9 bits (63), Expect = 4.4
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 16/127 (12%)
Query: 54 ACIILMVPRSDILLELAGHVEVEGDGAAHPALQHHLEGAEVIAGDLSDALDVVSLLHEGL 113
A +++ D ++ GHV V GD P A+V DA+DV +H +
Sbjct: 129 AVALVLEGEGDERVDAPGHVAVHGDLVGRPR-------AQVRVALTGDAVDVDLRVHGDV 181
Query: 114 EQPVDLDGLLAGEEGEQVDDVGAHGVQAAAAHQVVAAPVVLLAQQAAAV---HLHLTHQR 170
P+ G E G+ V +GA V A VV+ + AV HL L
Sbjct: 182 HAPLLGGGHRLREAGQAV--LGAAEVAPVRLGLQRPATVVVRHDEETAVGTGHLALA--- 236
Query: 171 LAHVALL 177
HVA+L
Sbjct: 237 -GHVAVL 242
>gi|239508721 PREDICTED: hypothetical protein [Homo sapiens]
Length = 401
Score = 28.9 bits (63), Expect = 4.4
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 16/127 (12%)
Query: 54 ACIILMVPRSDILLELAGHVEVEGDGAAHPALQHHLEGAEVIAGDLSDALDVVSLLHEGL 113
A +++ D ++ GHV V GD P A+V DA+DV +H +
Sbjct: 129 AVALVLEGEGDERVDAPGHVAVHGDLVGRPR-------AQVRVALTGDAVDVDLRVHGDV 181
Query: 114 EQPVDLDGLLAGEEGEQVDDVGAHGVQAAAAHQVVAAPVVLLAQQAAAV---HLHLTHQR 170
P+ G E G+ V +GA V A VV+ + AV HL L
Sbjct: 182 HAPLLGGGHRLREAGQAV--LGAAEVAPVRLGLQRPATVVVRHDEETAVGTGHLALA--- 236
Query: 171 LAHVALL 177
HVA+L
Sbjct: 237 -GHVAVL 242
>gi|149944548 neurobeachin-like 2 [Homo sapiens]
Length = 2754
Score = 28.5 bits (62), Expect = 5.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 26 QSSKVAAMVRGRPSHVRRSSWSWKAWRTA 54
+ K+ +V G+PS VR S ++ K WR++
Sbjct: 2707 EDGKLIVVVAGQPSEVRSSQFARKLWRSS 2735
>gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Homo
sapiens]
Length = 2378
Score = 28.1 bits (61), Expect = 7.6
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 108 LLHEGLEQPVDLDGLLAGEEGEQVDDVGAHGVQAAAAHQVVAAPVVLLAQQAAAVHLHLT 167
+ +EG+ V G+ + + + AHG+ A Q +A Q AA +T
Sbjct: 890 IANEGVANEVAAQGIATEDVADGIAKDAAHGITKEEAAQAIA------KQDAAH---SIT 940
Query: 168 HQRLAHVALLDQLLHAHESRQEAQHVAHDAHELGVVVGGRGHAESVQRRGRAVADDV 224
++ A + H + AQ VA++ GV H + + + VA++V
Sbjct: 941 NEDAAQGVANEDAAHGVANEDAAQGVANEVAAQGVANEDAVHGVANEDAVQGVANEV 997
>gi|239756319 PREDICTED: hypothetical protein [Homo sapiens]
Length = 463
Score = 28.1 bits (61), Expect = 7.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 205 GGRGHAESVQRRGRAVADDVLADACGVLTAICLVRGGGRLMH 246
G GH + QR R VA + A G + A GGGR+ H
Sbjct: 96 GLNGHGDGGQRLARRVAQRLQRHAVGAVVATRHGDGGGRVDH 137
>gi|239750846 PREDICTED: hypothetical protein [Homo sapiens]
Length = 463
Score = 28.1 bits (61), Expect = 7.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 205 GGRGHAESVQRRGRAVADDVLADACGVLTAICLVRGGGRLMH 246
G GH + QR R VA + A G + A GGGR+ H
Sbjct: 96 GLNGHGDGGQRLARRVAQRLQRHAVGAVVATRHGDGGGRVDH 137
>gi|239745208 PREDICTED: hypothetical protein XP_002343389 [Homo
sapiens]
Length = 463
Score = 28.1 bits (61), Expect = 7.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 205 GGRGHAESVQRRGRAVADDVLADACGVLTAICLVRGGGRLMH 246
G GH + QR R VA + A G + A GGGR+ H
Sbjct: 96 GLNGHGDGGQRLARRVAQRLQRHAVGAVVATRHGDGGGRVDH 137
>gi|24797065 zinc finger protein 212 [Homo sapiens]
Length = 495
Score = 28.1 bits (61), Expect = 7.6
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 68 ELAGHVEVEGDGAAHPA--------LQHHLEGAEVIAGDLS 100
E+ G +E EG G AHPA LQ+ EG + G+ S
Sbjct: 195 EMLGDLEEEGPGGAHPAGGVMIKQELQYTQEGPADLPGEFS 235
>gi|40789306 zinc finger protein 365 isoform C [Homo sapiens]
Length = 462
Score = 27.7 bits (60), Expect = 9.9
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 20/68 (29%)
Query: 24 YRQSSKVAAMVRGRPSHVRRSSWSWKAWRTACIILMVPRSDILLELAGHVEVEGDGAAHP 83
Y QS + + VR HV +W+ A +V ++D+ LE+ GH+
Sbjct: 291 YYQSQQASGFVRDLSGHV--------SWKGAGEARLVCQNDLELEIFGHI---------- 332
Query: 84 ALQHHLEG 91
HHL G
Sbjct: 333 --NHHLSG 338
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,205,094
Number of Sequences: 37866
Number of extensions: 383612
Number of successful extensions: 952
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 28
length of query: 251
length of database: 18,247,518
effective HSP length: 100
effective length of query: 151
effective length of database: 14,460,918
effective search space: 2183598618
effective search space used: 2183598618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.