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Search of human proteins with 239753898
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753898 PREDICTED: hypothetical protein [Homo sapiens]
(136 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753898 PREDICTED: hypothetical protein [Homo sapiens] 285 8e-78
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 44 5e-05
gi|239748448 PREDICTED: hypothetical protein [Homo sapiens] 41 3e-04
gi|239742390 PREDICTED: hypothetical protein [Homo sapiens] 41 3e-04
gi|31982899 seven in absentia homolog 2 [Homo sapiens] 38 0.002
gi|239755323 PREDICTED: hypothetical protein XP_002344527 [Homo ... 37 0.006
gi|239749816 PREDICTED: hypothetical protein [Homo sapiens] 37 0.006
gi|239744106 PREDICTED: hypothetical protein XP_002343034 [Homo ... 37 0.006
gi|24497554 homeobox A13 [Homo sapiens] 35 0.025
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 34 0.042
gi|239751430 PREDICTED: hypothetical protein [Homo sapiens] 33 0.055
gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo ... 33 0.055
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 33 0.072
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 33 0.072
gi|228008410 BEN domain containing 4 isoform b [Homo sapiens] 33 0.094
gi|148762950 BEN domain containing 4 isoform a [Homo sapiens] 33 0.094
gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens] 32 0.12
gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo ... 32 0.12
gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo ... 32 0.12
gi|24307873 zinc finger protein 651 [Homo sapiens] 32 0.16
gi|66730481 neuregulin 3 [Homo sapiens] 32 0.21
gi|194097436 CDC-like kinase 3 isoform a [Homo sapiens] 32 0.21
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 32 0.21
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 32 0.21
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 32 0.21
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 32 0.21
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 32 0.21
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 31 0.27
gi|112421108 capicua homolog [Homo sapiens] 31 0.27
gi|4506619 ribosomal protein L24 [Homo sapiens] 31 0.27
>gi|239753898 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 285 bits (729), Expect = 8e-78
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MNIFRFLMQWTQEHRRRKKAAPSGGVRRRSTARAQRRRRAVCWASGRHRRNPDVEDRAAW 60
MNIFRFLMQWTQEHRRRKKAAPSGGVRRRSTARAQRRRRAVCWASGRHRRNPDVEDRAAW
Sbjct: 1 MNIFRFLMQWTQEHRRRKKAAPSGGVRRRSTARAQRRRRAVCWASGRHRRNPDVEDRAAW 60
Query: 61 TSRALVGLAAHRAPTCPELPQRGEGPPSLTPPPSALGFRASEAGTSRFTAAAGAVRGPDG 120
TSRALVGLAAHRAPTCPELPQRGEGPPSLTPPPSALGFRASEAGTSRFTAAAGAVRGPDG
Sbjct: 61 TSRALVGLAAHRAPTCPELPQRGEGPPSLTPPPSALGFRASEAGTSRFTAAAGAVRGPDG 120
Query: 121 SAGAGAGTWVTCRPPL 136
SAGAGAGTWVTCRPPL
Sbjct: 121 SAGAGAGTWVTCRPPL 136
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 43.5 bits (101), Expect = 5e-05
Identities = 42/108 (38%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 30 STARAQRRRRAVCWASGRHRRNPD---VEDRAAWTSRALVGLAAHRAPTCPELPQRGEGP 86
S ARAQ CWA G R PD + RA TS L G+ + AP P P R P
Sbjct: 250 SGARAQPG--GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGS-GAPGEPAEPGRARAP 306
Query: 87 PSLTPPPSALGFRASEAGTSRFTAAAGAVRGPDGSAGAGA-GTWVTCR 133
S P S + SR A AGAV GP +A GA G+W + R
Sbjct: 307 RS--APSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPR 352
>gi|239748448 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 41.2 bits (95), Expect = 3e-04
Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 1 MNIFRFLMQWTQEHRRRKKAAPSGGVRRRSTARAQRRRRAVCWASGRHRRNPDVED--RA 58
MNIFRFLMQWTQEH ++ G +R+ R RR P+ D R
Sbjct: 1 MNIFRFLMQWTQEHSQKDIPDWRNGPKRKDRQITTFRGPTAAKEGSAKRRGPEALDGSRP 60
Query: 59 AWTSRALVGLAAHRAPTCPELPQRGEGPPSL 89
A + ++G PE P+RG P SL
Sbjct: 61 APETGCVLG-----QWKTPEKPRRGR-PGSL 85
>gi|239742390 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 41.2 bits (95), Expect = 3e-04
Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 1 MNIFRFLMQWTQEHRRRKKAAPSGGVRRRSTARAQRRRRAVCWASGRHRRNPDVED--RA 58
MNIFRFLMQWTQEH ++ G +R+ R RR P+ D R
Sbjct: 1 MNIFRFLMQWTQEHSQKDIPDWRNGPKRKDRQITTFRGPTAAKEGSAKRRGPEALDGSRP 60
Query: 59 AWTSRALVGLAAHRAPTCPELPQRGEGPPSL 89
A + ++G PE P+RG P SL
Sbjct: 61 APETGCVLG-----QWKTPEKPRRGR-PGSL 85
>gi|31982899 seven in absentia homolog 2 [Homo sapiens]
Length = 324
Score = 38.1 bits (87), Expect = 0.002
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 74 PTCPELPQRGEGPPSLTPPPSALGFRASEAGTSRFTAAAGAVRGPDGSAGAG 125
P + P + + PS PP+A A+ G+S AAA + GP G GAG
Sbjct: 14 PCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGGGAG 65
>gi|239755323 PREDICTED: hypothetical protein XP_002344527 [Homo
sapiens]
Length = 152
Score = 36.6 bits (83), Expect = 0.006
Identities = 33/95 (34%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 41 VCWASGRHRRNPDVEDRAAWTSRALVGLAAHRAP-----TCPELPQRGEGPPSLTPPPSA 95
+C A R RR + AL L A P P P + PP L PP SA
Sbjct: 32 LCPAGRRRRRGRGCFGSSGGRKSALCALLARFLPFPRPAPLPPPPSQPPPPPPLDPPASA 91
Query: 96 LGFRASEAGTS-----RFTAAAGAVRGPDGSAGAG 125
R++ +G+S R A AGA RG GS AG
Sbjct: 92 SSLRSNSSGSSGDDDDRKRAKAGA-RGSWGSWSAG 125
>gi|239749816 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 36.6 bits (83), Expect = 0.006
Identities = 33/95 (34%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 41 VCWASGRHRRNPDVEDRAAWTSRALVGLAAHRAP-----TCPELPQRGEGPPSLTPPPSA 95
+C A R RR + AL L A P P P + PP L PP SA
Sbjct: 32 LCPAGRRRRRGRGCFGSSGGRKSALCALLARFLPFPRPAPLPPPPSQPPPPPPLDPPASA 91
Query: 96 LGFRASEAGTS-----RFTAAAGAVRGPDGSAGAG 125
R++ +G+S R A AGA RG GS AG
Sbjct: 92 SSLRSNSSGSSGDDDDRKRAKAGA-RGSWGSWSAG 125
>gi|239744106 PREDICTED: hypothetical protein XP_002343034 [Homo
sapiens]
Length = 152
Score = 36.6 bits (83), Expect = 0.006
Identities = 33/95 (34%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 41 VCWASGRHRRNPDVEDRAAWTSRALVGLAAHRAP-----TCPELPQRGEGPPSLTPPPSA 95
+C A R RR + AL L A P P P + PP L PP SA
Sbjct: 32 LCPAGRRRRRGRGCFGSSGGRKSALCALLARFLPFPRPAPLPPPPSQPPPPPPLDPPASA 91
Query: 96 LGFRASEAGTS-----RFTAAAGAVRGPDGSAGAG 125
R++ +G+S R A AGA RG GS AG
Sbjct: 92 SSLRSNSSGSSGDDDDRKRAKAGA-RGSWGSWSAG 125
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 34.7 bits (78), Expect = 0.025
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 58 AAWTSRALVGLAAHRAPTCPELPQRGEGPPSLTPPPSALGFRASEAGTSRFTAAAGAVRG 117
AA + L AH AP P P PPSA A+ A + AAA + G
Sbjct: 80 AAAAANQCRNLMAHPAPLAPGAASAYSSAPG-EAPPSAAAAAAAAAAAAAAAAAASSSGG 138
Query: 118 PDGSAGAGAGTWVTCRP 134
P + AGA C P
Sbjct: 139 PGPAGPAGAEAAKQCSP 155
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 33.9 bits (76), Expect = 0.042
Identities = 40/134 (29%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 12 QEHRRRKKAAPSGGVRRRSTARAQRRRRAVCWAS-------GRHRRNPDVEDRAAWTSRA 64
++HRR K AA RR + Q++RR A+ G+ R D + R + A
Sbjct: 223 KKHRRPKPAAGGAKSRRGGGKKPQKQRRRGQKAATGGKSRVGKSRGGGDKKLRRQGQNAA 282
Query: 65 LVGLAAHRAPTCPELP----QRGEGPPSL----------TPPPSALGFRASEAGTSRFTA 110
L G A T E P + G GP SL P G +A++A A
Sbjct: 283 LAGAKRRGAATAGEKPAAKGRGGRGPKSLGGQNPRWGRGGKKPRRRGQKATKA------A 336
Query: 111 AAGAVRGPDGSAGA 124
AAG RG G A
Sbjct: 337 AAGTKRGGGGQQKA 350
>gi|239751430 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 33.5 bits (75), Expect = 0.055
Identities = 35/121 (28%), Positives = 44/121 (36%), Gaps = 25/121 (20%)
Query: 10 WTQEHRRRKKAAPSGGVRRRSTARAQRRRR---AVCWASGRHRRNPDVEDRAAWTSRALV 66
W R+ P G R + + A R R A A+G R P E RAAW +
Sbjct: 114 WAPPQPGRRPTCP--GCCRGAASGAPRWVRTWAAAAVAAGPGRSAPQREPRAAWAA---- 167
Query: 67 GLAAHRAPTCPELPQRGEGPPSLTPPPSALGFRASEAGTSRFTAAAGAVRGPDGSAGAGA 126
CP P GP + A E GT R + A A RG G++ G
Sbjct: 168 ---------CPAGPSSAAGPER-----GHVSCAADEPGTER--SGAAAARGSAGASSRGR 211
Query: 127 G 127
G
Sbjct: 212 G 212
>gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo
sapiens]
Length = 303
Score = 33.5 bits (75), Expect = 0.055
Identities = 35/121 (28%), Positives = 44/121 (36%), Gaps = 25/121 (20%)
Query: 10 WTQEHRRRKKAAPSGGVRRRSTARAQRRRR---AVCWASGRHRRNPDVEDRAAWTSRALV 66
W R+ P G R + + A R R A A+G R P E RAAW +
Sbjct: 114 WAPPQPGRRPTCP--GCCRGAASGAPRWVRTWAAAAVAAGPGRSAPQREPRAAWAA---- 167
Query: 67 GLAAHRAPTCPELPQRGEGPPSLTPPPSALGFRASEAGTSRFTAAAGAVRGPDGSAGAGA 126
CP P GP + A E GT R + A A RG G++ G
Sbjct: 168 ---------CPAGPSSAAGPER-----GHVSCAADEPGTER--SGAAAARGSAGASSRGR 211
Query: 127 G 127
G
Sbjct: 212 G 212
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 33.1 bits (74), Expect = 0.072
Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 33 RAQRRRR---AVCWASGRHRRNPDVEDRAAWTSRALVGLAAHRAPTCPELPQRGEGPPSL 89
RAQRR + ASG+ R E A + A + +A R PT P L + L
Sbjct: 51 RAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPL 110
Query: 90 TPPPS-------ALGFRASEAGTSRFTAAAGAVRGPDG 120
P PS A G AS +G+S+ A G RG DG
Sbjct: 111 APGPSSSPGAGRAPGAMASPSGSSK---ATGKPRGRDG 145
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 33.1 bits (74), Expect = 0.072
Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 33 RAQRRRR---AVCWASGRHRRNPDVEDRAAWTSRALVGLAAHRAPTCPELPQRGEGPPSL 89
RAQRR + ASG+ R E A + A + +A R PT P L + L
Sbjct: 154 RAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPL 213
Query: 90 TPPPS-------ALGFRASEAGTSRFTAAAGAVRGPDG 120
P PS A G AS +G+S+ A G RG DG
Sbjct: 214 APGPSSSPGAGRAPGAMASPSGSSK---ATGKPRGRDG 248
>gi|228008410 BEN domain containing 4 isoform b [Homo sapiens]
Length = 441
Score = 32.7 bits (73), Expect = 0.094
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 71 HRAPTCPELPQRGEGPPSLTP--PPSALGFRASEAGTSRFTAAAGAVRGPDGSAGAGAGT 128
+ PT ELP PP P P +A+ +SE +F A + GP +A A + +
Sbjct: 41 YERPTLVELPHVRAPPPPPPPFAPHAAVSISSSEPPPQQFQAQSSYPPGPGRAAAAASSS 100
Query: 129 WVTCRP 134
+C P
Sbjct: 101 SPSCTP 106
Score = 28.9 bits (63), Expect = 1.4
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 69 AAHRAPTCPELPQRGEGPPSLTPPPSALGFRASEAGTSRFTAAAGAVRGPDGSAGAGAG 127
A+ +P+C +G PPP AS A +S + AA GP +A AG G
Sbjct: 97 ASSSSPSCTPATSQGHLRTPAQPPP------ASPAASSSSSFAAVVRYGPGAAAAAGTG 149
>gi|148762950 BEN domain containing 4 isoform a [Homo sapiens]
Length = 534
Score = 32.7 bits (73), Expect = 0.094
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 71 HRAPTCPELPQRGEGPPSLTP--PPSALGFRASEAGTSRFTAAAGAVRGPDGSAGAGAGT 128
+ PT ELP PP P P +A+ +SE +F A + GP +A A + +
Sbjct: 41 YERPTLVELPHVRAPPPPPPPFAPHAAVSISSSEPPPQQFQAQSSYPPGPGRAAAAASSS 100
Query: 129 WVTCRP 134
+C P
Sbjct: 101 SPSCTP 106
Score = 28.9 bits (63), Expect = 1.4
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 69 AAHRAPTCPELPQRGEGPPSLTPPPSALGFRASEAGTSRFTAAAGAVRGPDGSAGAGAG 127
A+ +P+C +G PPP AS A +S + AA GP +A AG G
Sbjct: 97 ASSSSPSCTPATSQGHLRTPAQPPP------ASPAASSSSSFAAVVRYGPGAAAAAGTG 149
>gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]
Length = 333
Score = 32.3 bits (72), Expect = 0.12
Identities = 33/119 (27%), Positives = 42/119 (35%), Gaps = 11/119 (9%)
Query: 16 RRKKAAPSGGVRRRSTARAQRRRRAVCWASGRHRRNPDVEDRAAWTS---RALVGLAAHR 72
R ++ PS G R R A RHRR P S R+ R
Sbjct: 107 RHRQKPPSPGSRHRWEPPPPGAATAT---GSRHRREPPSPGATTAGSCHLRSSGSTGTRR 163
Query: 73 APTCP---ELPQRGEGPPSLTPPPSALGFRAS--EAGTSRFTAAAGAVRGPDGSAGAGA 126
AP+ P ++P EGP TPP GF S G+ R P G+ G+
Sbjct: 164 APSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGS 222
>gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo
sapiens]
Length = 333
Score = 32.3 bits (72), Expect = 0.12
Identities = 33/119 (27%), Positives = 42/119 (35%), Gaps = 11/119 (9%)
Query: 16 RRKKAAPSGGVRRRSTARAQRRRRAVCWASGRHRRNPDVEDRAAWTS---RALVGLAAHR 72
R ++ PS G R R A RHRR P S R+ R
Sbjct: 107 RHRQKPPSPGSRHRWEPPPPGAATAT---GSRHRREPPSPGATTAGSCHLRSSGSTGTRR 163
Query: 73 APTCP---ELPQRGEGPPSLTPPPSALGFRAS--EAGTSRFTAAAGAVRGPDGSAGAGA 126
AP+ P ++P EGP TPP GF S G+ R P G+ G+
Sbjct: 164 APSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGS 222
>gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo
sapiens]
Length = 333
Score = 32.3 bits (72), Expect = 0.12
Identities = 33/119 (27%), Positives = 42/119 (35%), Gaps = 11/119 (9%)
Query: 16 RRKKAAPSGGVRRRSTARAQRRRRAVCWASGRHRRNPDVEDRAAWTS---RALVGLAAHR 72
R ++ PS G R R A RHRR P S R+ R
Sbjct: 107 RHRQKPPSPGSRHRWEPPPPGAATAT---GSRHRREPPSPGATTAGSCHLRSSGSTGTRR 163
Query: 73 APTCP---ELPQRGEGPPSLTPPPSALGFRAS--EAGTSRFTAAAGAVRGPDGSAGAGA 126
AP+ P ++P EGP TPP GF S G+ R P G+ G+
Sbjct: 164 APSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGS 222
>gi|24307873 zinc finger protein 651 [Homo sapiens]
Length = 371
Score = 32.0 bits (71), Expect = 0.16
Identities = 16/35 (45%), Positives = 16/35 (45%)
Query: 70 AHRAPTCPELPQRGEGPPSLTPPPSALGFRASEAG 104
AH P P LPQ PP L PPP AS G
Sbjct: 331 AHALPLLPGLPQTLPPPPHLPPPPPLFPTTASPGG 365
>gi|66730481 neuregulin 3 [Homo sapiens]
Length = 696
Score = 31.6 bits (70), Expect = 0.21
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 84 EGPPSLTPPPSALGFRAS-EAGTSRFTAAAGAVRGPDGSAGAGA 126
EG + +PP +A AS E GT+ AAA A GPDG G GA
Sbjct: 3 EGAAAASPPGAASAAAASAEEGTAAAAAAAAAGGGPDG-GGEGA 45
>gi|194097436 CDC-like kinase 3 isoform a [Homo sapiens]
Length = 638
Score = 31.6 bits (70), Expect = 0.21
Identities = 44/142 (30%), Positives = 51/142 (35%), Gaps = 25/142 (17%)
Query: 15 RRRKKAAPSGGVRRR------------STARAQRRRRAVCWASGRHRRN------PDVED 56
RRR+ A +G RR S RAQ R A G + R P
Sbjct: 7 RRRELADHAGSGRRSGPSPTARSGPHLSALRAQPARAAHLSGRGTYVRRDTAGGGPGQAR 66
Query: 57 RAAWTSRALVGLAAHRAPT--CP---ELPQRGEGPPSLTPPPSALGFRASEAGTSRFTAA 111
+L+G A R+ CP E R PPS P A AG R A
Sbjct: 67 PLGPPGTSLLGRGARRSGEGWCPGAFESGARAARPPSRVEPRLATAASREGAGLPRAEVA 126
Query: 112 AGAVRGP-DGSAG-AGAGTWVT 131
AG+ RG G G A AG W T
Sbjct: 127 AGSGRGARSGEWGLAAAGAWET 148
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 31.6 bits (70), Expect = 0.21
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 11/125 (8%)
Query: 16 RRKKAAPSGGVRRRSTARAQRRRRAVCWASGRHRRNPDVEDRAAWTSRALVGLAAH--RA 73
R + PS G + A+AQ SG D E+ A ++ H RA
Sbjct: 765 RGPASVPSVGKAVATAAQAQTGPEE---DSGSSEEESDSEEEAETLAQVKPSGKTHQIRA 821
Query: 74 PTCP--ELPQRGEGPPSLTPPPSALGFRASEAGTSRFTAAAGAVRGPDGSAGAGAGTWVT 131
P E P++G P PP G A++AG + ++ DG A A +
Sbjct: 822 ALAPAKESPRKGAAPT----PPGKTGPSAAQAGKQDDSGSSSEESDSDGEAPAAVTSAQV 877
Query: 132 CRPPL 136
+PPL
Sbjct: 878 IKPPL 882
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 31.6 bits (70), Expect = 0.21
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 11/125 (8%)
Query: 16 RRKKAAPSGGVRRRSTARAQRRRRAVCWASGRHRRNPDVEDRAAWTSRALVGLAAH--RA 73
R + PS G + A+AQ SG D E+ A ++ H RA
Sbjct: 842 RGPASVPSVGKAVATAAQAQTGPEE---DSGSSEEESDSEEEAETLAQVKPSGKTHQIRA 898
Query: 74 PTCP--ELPQRGEGPPSLTPPPSALGFRASEAGTSRFTAAAGAVRGPDGSAGAGAGTWVT 131
P E P++G P PP G A++AG + ++ DG A A +
Sbjct: 899 ALAPAKESPRKGAAPT----PPGKTGPSAAQAGKQDDSGSSSEESDSDGEAPAAVTSAQV 954
Query: 132 CRPPL 136
+PPL
Sbjct: 955 IKPPL 959
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 31.6 bits (70), Expect = 0.21
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 11/125 (8%)
Query: 16 RRKKAAPSGGVRRRSTARAQRRRRAVCWASGRHRRNPDVEDRAAWTSRALVGLAAH--RA 73
R + PS G + A+AQ SG D E+ A ++ H RA
Sbjct: 842 RGPASVPSVGKAVATAAQAQTGPEE---DSGSSEEESDSEEEAETLAQVKPSGKTHQIRA 898
Query: 74 PTCP--ELPQRGEGPPSLTPPPSALGFRASEAGTSRFTAAAGAVRGPDGSAGAGAGTWVT 131
P E P++G P PP G A++AG + ++ DG A A +
Sbjct: 899 ALAPAKESPRKGAAPT----PPGKTGPSAAQAGKQDDSGSSSEESDSDGEAPAAVTSAQV 954
Query: 132 CRPPL 136
+PPL
Sbjct: 955 IKPPL 959
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 31.6 bits (70), Expect = 0.21
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 11/125 (8%)
Query: 16 RRKKAAPSGGVRRRSTARAQRRRRAVCWASGRHRRNPDVEDRAAWTSRALVGLAAH--RA 73
R + PS G + A+AQ SG D E+ A ++ H RA
Sbjct: 765 RGPASVPSVGKAVATAAQAQTGPEE---DSGSSEEESDSEEEAETLAQVKPSGKTHQIRA 821
Query: 74 PTCP--ELPQRGEGPPSLTPPPSALGFRASEAGTSRFTAAAGAVRGPDGSAGAGAGTWVT 131
P E P++G P PP G A++AG + ++ DG A A +
Sbjct: 822 ALAPAKESPRKGAAPT----PPGKTGPSAAQAGKQDDSGSSSEESDSDGEAPAAVTSAQV 877
Query: 132 CRPPL 136
+PPL
Sbjct: 878 IKPPL 882
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 31.6 bits (70), Expect = 0.21
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 11/125 (8%)
Query: 16 RRKKAAPSGGVRRRSTARAQRRRRAVCWASGRHRRNPDVEDRAAWTSRALVGLAAH--RA 73
R + PS G + A+AQ SG D E+ A ++ H RA
Sbjct: 842 RGPASVPSVGKAVATAAQAQTGPEE---DSGSSEEESDSEEEAETLAQVKPSGKTHQIRA 898
Query: 74 PTCP--ELPQRGEGPPSLTPPPSALGFRASEAGTSRFTAAAGAVRGPDGSAGAGAGTWVT 131
P E P++G P PP G A++AG + ++ DG A A +
Sbjct: 899 ALAPAKESPRKGAAPT----PPGKTGPSAAQAGKQDDSGSSSEESDSDGEAPAAVTSAQV 954
Query: 132 CRPPL 136
+PPL
Sbjct: 955 IKPPL 959
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 31.2 bits (69), Expect = 0.27
Identities = 41/139 (29%), Positives = 52/139 (37%), Gaps = 27/139 (19%)
Query: 16 RRKKAAPSGGVRRRSTARAQRRRRAVCWASGRHRRN--------PDVEDRAAWTSRALVG 67
R +AA G RRR R +RRRR+ AS RR P R+ +R+
Sbjct: 375 RGGRAAGGAGRRRR---RRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSD 431
Query: 68 LAAHRAPTCP------ELPQRGEGPPSLTPPPSALGFRASEAGTSRFTAAAGAVRGPDG- 120
+ R P E G G + PP RA A TS A G GP+G
Sbjct: 432 SGSGRGAPGPGPEPGSERGHGGHGKRAKERPP-----RARPASTSPSPGAHGRRGGPEGK 486
Query: 121 ----SAGAGAGTWVTCRPP 135
S G +W + R P
Sbjct: 487 SSSRSPGPHPRSWSSSRSP 505
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 31.2 bits (69), Expect = 0.27
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 79 LPQRGEGPPSLTPPPSALGFRASEAGTSRFTAAAGAVRGPDGSAGAGAGTWVTCRPP 135
L RGE P TPP A + G+S ++ A P+ AG G V RPP
Sbjct: 1283 LENRGEPP---TPPSPAPAPAVAPGGSSESSSGRAAGDTPERKEAAGTGKKVKVRPP 1336
>gi|4506619 ribosomal protein L24 [Homo sapiens]
Length = 157
Score = 31.2 bits (69), Expect = 0.27
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 18/103 (17%)
Query: 8 MQWTQEHRRRKKAAPSGGVRRRSTARAQRRRRAVCWAS-----GRHRRNPDV-------- 54
+ WT +RR+ K S ++++ T RA + +RA+ AS + + P+V
Sbjct: 49 INWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQA 108
Query: 55 -----EDRAAWTSRALVGLAAHRAPTCPELPQRGEGPPSLTPP 92
E + A + +AA +APT Q+ P ++ P
Sbjct: 109 IRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAP 151
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.132 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,903,935
Number of Sequences: 37866
Number of extensions: 358117
Number of successful extensions: 3042
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 201
Number of HSP's that attempted gapping in prelim test: 2751
Number of HSP's gapped (non-prelim): 471
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.