Guide to the Human Genome
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Search of human proteins with 239753827

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753827 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
         (202 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753827 PREDICTED: similar to S-phase kinase-associated pro...   410   e-115
gi|239748390 PREDICTED: hypothetical protein XP_002346652 [Homo ...   410   e-115
gi|239742318 PREDICTED: hypothetical protein XP_002342489 [Homo ...   410   e-115
gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo ...   236   1e-62
gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo ...   217   5e-57
gi|239755758 PREDICTED: similar to S-phase kinase-associated pro...   206   8e-54
gi|239750260 PREDICTED: similar to S-phase kinase-associated pro...   206   8e-54
gi|239744568 PREDICTED: similar to S-phase kinase-associated pro...   206   8e-54
gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]            32   0.28 
gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]            32   0.28 
gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]            32   0.28 
gi|5032161 elongin C [Homo sapiens]                                    32   0.48 
gi|62543567 nudix (nucleoside diphosphate linked moiety X)-type ...    30   1.8  
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    29   3.1  
gi|112789555 ADAM metallopeptidase with thrombospondin type 1 mo...    29   3.1  
gi|25777598 diacylglycerol kinase, delta 130kDa isoform 2 [Homo ...    28   4.1  
gi|41281453 serine/threonine kinase 2 [Homo sapiens]                   28   5.3  
gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Hom...    28   5.3  
gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Hom...    28   5.3  
gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Hom...    28   5.3  
gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Hom...    28   5.3  
gi|222144283 hypothetical protein LOC65998 [Homo sapiens]              28   6.9  
gi|47132519 Ras association and pleckstrin homology domains 1 is...    28   6.9  

>gi|239753827 PREDICTED: similar to S-phase kinase-associated
           protein 1A (p19A) [Homo sapiens]
          Length = 202

 Score =  410 bits (1055), Expect = e-115
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK 60
           MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK
Sbjct: 1   MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK 60

Query: 61  IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT 120
           IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT
Sbjct: 61  IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT 120

Query: 121 DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL 180
           DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL
Sbjct: 121 DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL 180

Query: 181 IPKLTLLEEAQIPKENQWCEET 202
           IPKLTLLEEAQIPKENQWCEET
Sbjct: 181 IPKLTLLEEAQIPKENQWCEET 202


>gi|239748390 PREDICTED: hypothetical protein XP_002346652 [Homo
           sapiens]
          Length = 202

 Score =  410 bits (1055), Expect = e-115
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK 60
           MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK
Sbjct: 1   MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK 60

Query: 61  IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT 120
           IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT
Sbjct: 61  IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT 120

Query: 121 DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL 180
           DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL
Sbjct: 121 DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL 180

Query: 181 IPKLTLLEEAQIPKENQWCEET 202
           IPKLTLLEEAQIPKENQWCEET
Sbjct: 181 IPKLTLLEEAQIPKENQWCEET 202


>gi|239742318 PREDICTED: hypothetical protein XP_002342489 [Homo
           sapiens]
          Length = 202

 Score =  410 bits (1055), Expect = e-115
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK 60
           MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK
Sbjct: 1   MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK 60

Query: 61  IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT 120
           IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT
Sbjct: 61  IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT 120

Query: 121 DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL 180
           DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL
Sbjct: 121 DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL 180

Query: 181 IPKLTLLEEAQIPKENQWCEET 202
           IPKLTLLEEAQIPKENQWCEET
Sbjct: 181 IPKLTLLEEAQIPKENQWCEET 202


>gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo
           sapiens]
          Length = 163

 Score =  236 bits (601), Expect = 1e-62
 Identities = 123/170 (72%), Positives = 139/170 (81%), Gaps = 9/170 (5%)

Query: 33  IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENLGMDD-GDNDPVPLPNVNAAILKRSFR 91
           +PSIKL SSDGE+FEVDVEIAKQSVT+K MLE+LGMDD GD+DPVPLPNVNAAILK+   
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKK--- 57

Query: 92  LGTIIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLDIK 151
              +IQWCT+ KD+PPPP E DEN+EKRTD IP WDQ+FLK+D GTLFE+ILAANYLDIK
Sbjct: 58  ---VIQWCTHHKDDPPPP-EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 113

Query: 152 GLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKLTLLEEAQIPKENQWCEE 201
           GLLDV CKTVA +IKGK PEEI      +    T  EEAQ+ KENQWCEE
Sbjct: 114 GLLDVTCKTVANMIKGKTPEEI-RKTFNIKNDFTEEEEAQVRKENQWCEE 162


>gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo
           sapiens]
          Length = 160

 Score =  217 bits (553), Expect = 5e-57
 Identities = 117/168 (69%), Positives = 134/168 (79%), Gaps = 10/168 (5%)

Query: 33  IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENLGMDD-GDNDPVPLPNVNAAILKRSFR 91
           +PSIKL SSDGE+FEVDVEIAKQSVT+K MLE+LGMDD GD+DPVPLPNVNAAILK+   
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKK--- 57

Query: 92  LGTIIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLDIK 151
              +IQWCT+ KD+PPPP E DEN+EKRTD IP WDQ+FLK+D GTLFE+ILAANYLDIK
Sbjct: 58  ---VIQWCTHHKDDPPPP-EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 113

Query: 152 GLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKLTLLEEAQIPKENQWC 199
           GLLDV CKTVA +IKGK PEEI      +    T  EEAQ+    Q+C
Sbjct: 114 GLLDVTCKTVANMIKGKTPEEI-RKTFNIKNDFTEEEEAQV-GSTQFC 159


>gi|239755758 PREDICTED: similar to S-phase kinase-associated
           protein 1A (p19A) [Homo sapiens]
          Length = 168

 Score =  206 bits (525), Expect = 8e-54
 Identities = 111/170 (65%), Positives = 131/170 (77%), Gaps = 9/170 (5%)

Query: 33  IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENLGM-DDGDNDPVPLPNVNAAILKRSFR 91
           +PSIKL SS GE+FEVDVEI KQSVT+K MLE+LGM D+GD+DPVPLPNVNAAILK+   
Sbjct: 1   MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKK--- 57

Query: 92  LGTIIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLDIK 151
              +IQWCT+ +D+ PPP +  EN+EKRTD IP WDQ+FLK+D GTLFE+ILAANYLDIK
Sbjct: 58  ---VIQWCTHHEDDSPPP-KVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 113

Query: 152 GLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKLTLLEEAQIPKENQWCEE 201
           GLLDV CKTVA ++  K PEEI      L    T   EAQ+ +ENQ CEE
Sbjct: 114 GLLDVTCKTVANMVNRKTPEEI-HKTFNLKNDFTEEWEAQVHQENQQCEE 162


>gi|239750260 PREDICTED: similar to S-phase kinase-associated
           protein 1A (p19A) [Homo sapiens]
          Length = 168

 Score =  206 bits (525), Expect = 8e-54
 Identities = 111/170 (65%), Positives = 131/170 (77%), Gaps = 9/170 (5%)

Query: 33  IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENLGM-DDGDNDPVPLPNVNAAILKRSFR 91
           +PSIKL SS GE+FEVDVEI KQSVT+K MLE+LGM D+GD+DPVPLPNVNAAILK+   
Sbjct: 1   MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKK--- 57

Query: 92  LGTIIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLDIK 151
              +IQWCT+ +D+ PPP +  EN+EKRTD IP WDQ+FLK+D GTLFE+ILAANYLDIK
Sbjct: 58  ---VIQWCTHHEDDSPPP-KVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 113

Query: 152 GLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKLTLLEEAQIPKENQWCEE 201
           GLLDV CKTVA ++  K PEEI      L    T   EAQ+ +ENQ CEE
Sbjct: 114 GLLDVTCKTVANMVNRKTPEEI-HKTFNLKNDFTEEWEAQVHQENQQCEE 162


>gi|239744568 PREDICTED: similar to S-phase kinase-associated
           protein 1A (p19A) [Homo sapiens]
          Length = 168

 Score =  206 bits (525), Expect = 8e-54
 Identities = 111/170 (65%), Positives = 131/170 (77%), Gaps = 9/170 (5%)

Query: 33  IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENLGM-DDGDNDPVPLPNVNAAILKRSFR 91
           +PSIKL SS GE+FEVDVEI KQSVT+K MLE+LGM D+GD+DPVPLPNVNAAILK+   
Sbjct: 1   MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKK--- 57

Query: 92  LGTIIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLDIK 151
              +IQWCT+ +D+ PPP +  EN+EKRTD IP WDQ+FLK+D GTLFE+ILAANYLDIK
Sbjct: 58  ---VIQWCTHHEDDSPPP-KVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 113

Query: 152 GLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKLTLLEEAQIPKENQWCEE 201
           GLLDV CKTVA ++  K PEEI      L    T   EAQ+ +ENQ CEE
Sbjct: 114 GLLDVTCKTVANMVNRKTPEEI-HKTFNLKNDFTEEWEAQVHQENQQCEE 162


>gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 115

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 20/115 (17%)

Query: 36  IKLLSSDGELFEVDVEIAKQSVTLKIMLENLG-MDDGDNDPVPLPNVNAAILKRSFRLGT 94
           +KL+ SDG  F V  E A  S T+K ML   G   + + D V    + + +L + + L  
Sbjct: 19  VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78

Query: 95  IIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLD 149
              +     ++    PE                     + P    E+++AAN+LD
Sbjct: 79  YFMYKVRYANSSTEIPE-------------------FPVAPEIALELLMAANFLD 114


>gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 115

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 20/115 (17%)

Query: 36  IKLLSSDGELFEVDVEIAKQSVTLKIMLENLG-MDDGDNDPVPLPNVNAAILKRSFRLGT 94
           +KL+ SDG  F V  E A  S T+K ML   G   + + D V    + + +L + + L  
Sbjct: 19  VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78

Query: 95  IIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLD 149
              +     ++    PE                     + P    E+++AAN+LD
Sbjct: 79  YFMYKVRYANSSTEIPE-------------------FPVAPEIALELLMAANFLD 114


>gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 115

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 20/115 (17%)

Query: 36  IKLLSSDGELFEVDVEIAKQSVTLKIMLENLG-MDDGDNDPVPLPNVNAAILKRSFRLGT 94
           +KL+ SDG  F V  E A  S T+K ML   G   + + D V    + + +L + + L  
Sbjct: 19  VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78

Query: 95  IIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLD 149
              +     ++    PE                     + P    E+++AAN+LD
Sbjct: 79  YFMYKVRYANSSTEIPE-------------------FPVAPEIALELLMAANFLD 114


>gi|5032161 elongin C [Homo sapiens]
          Length = 112

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 23/115 (20%)

Query: 36  IKLLSSDGELFEVDVEIAKQSVTLKIMLENLG-MDDGDNDPVPLPNVNAAILKRSFRLGT 94
           +KL+SSDG  F V  E A  S T+K ML   G   + + + V    + + +L +     T
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 95  IIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLD 149
                TN     P  P                      I P    E+++AAN+LD
Sbjct: 79  YKVRYTNSSTEIPEFP----------------------IAPEIALELLMAANFLD 111


>gi|62543567 nudix (nucleoside diphosphate linked moiety X)-type
           motif 17 [Homo sapiens]
          Length = 328

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 123 IPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLP 179
           IP   +   ++  GT F + L   +L   G    PCK+ AYL  G A EE   + LP
Sbjct: 268 IPTMAEDKERVSTGTKFALKLWLQHL---GRTPPPCKSAAYLDPGPAKEEWNMDPLP 321


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
           sapiens]
          Length = 2715

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)

Query: 75  PVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPP 110
           PVPLP    +IL+         +W +  ++ PPPPP
Sbjct: 593 PVPLPEKRRSILREP-----TFRWTSLTRELPPPPP 623



 Score = 28.1 bits (61), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 105 NPPPPPEADENEEKRTDAIPA 125
           +PPPPP  +E EE     +PA
Sbjct: 443 SPPPPPAQEEQEESPPPVVPA 463


>gi|112789555 ADAM metallopeptidase with thrombospondin type 1
           motif, 19 preproprotein [Homo sapiens]
          Length = 1207

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 106 PPPPPEADENEEKRTDAIPAWDQKFLKIDPG 136
           PPPP E +E+EE  +  +P        + PG
Sbjct: 105 PPPPSEGEEDEELESQELPRGSSGAAALSPG 135


>gi|25777598 diacylglycerol kinase, delta 130kDa isoform 2 [Homo
           sapiens]
          Length = 1214

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 106 PPPPPEADENEEKRTDAIPAWDQKFLK 132
           PPPPP  +E+ +   +A P   QK ++
Sbjct: 15  PPPPPPPEESSDSEPEAEPGSPQKLIR 41


>gi|41281453 serine/threonine kinase 2 [Homo sapiens]
          Length = 1235

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 8   KELREAVNSSLRQRVFQLKTDPTPI-IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENL 66
           KE+  ++       V    T+P P+ IPSI + S  GE  E    ++K    L    EN 
Sbjct: 684 KEIPVSIKKEPEVTVVSQPTEPQPVLIPSININSDSGENKEEIGSLSKTETILPPESENP 743

Query: 67  GMDDGDN 73
             +D D+
Sbjct: 744 KENDNDS 750


>gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Homo
            sapiens]
          Length = 3710

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 43   GELFEVDVEIAKQSVT--LKIMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCT 100
            G+L  + V +++  +T  +KI+LENLG  +  + P P  +V   +  R   + ++     
Sbjct: 1818 GKLKPMQVALSEDDLTVLMKILLENLG--EASSQPSPTQSVQETVRVRKVDVSSVPDHLK 1875

Query: 101  NQKD 104
             Q+D
Sbjct: 1876 EQED 1879


>gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Homo
            sapiens]
          Length = 3585

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 43   GELFEVDVEIAKQSVT--LKIMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCT 100
            G+L  + V +++  +T  +KI+LENLG  +  + P P  +V   +  R   + ++     
Sbjct: 1818 GKLKPMQVALSEDDLTVLMKILLENLG--EASSQPSPTQSVQETVRVRKVDVSSVPDHLK 1875

Query: 101  NQKD 104
             Q+D
Sbjct: 1876 EQED 1879


>gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Homo
            sapiens]
          Length = 3628

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 43   GELFEVDVEIAKQSVT--LKIMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCT 100
            G+L  + V +++  +T  +KI+LENLG  +  + P P  +V   +  R   + ++     
Sbjct: 1861 GKLKPMQVALSEDDLTVLMKILLENLG--EASSQPSPTQSVQETVRVRKVDVSSVPDHLK 1918

Query: 101  NQKD 104
             Q+D
Sbjct: 1919 EQED 1922


>gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Homo
            sapiens]
          Length = 3753

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 43   GELFEVDVEIAKQSVT--LKIMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCT 100
            G+L  + V +++  +T  +KI+LENLG  +  + P P  +V   +  R   + ++     
Sbjct: 1861 GKLKPMQVALSEDDLTVLMKILLENLG--EASSQPSPTQSVQETVRVRKVDVSSVPDHLK 1918

Query: 101  NQKD 104
             Q+D
Sbjct: 1919 EQED 1922


>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
          Length = 678

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 106 PPPPPEADENEEKRTDAIPAWDQKFL 131
           PPPPP    + E+R +  P W  ++L
Sbjct: 565 PPPPPPPPRSREQRRNYQPRWRGEYL 590


>gi|47132519 Ras association and pleckstrin homology domains 1 isoform
            1 [Homo sapiens]
          Length = 1250

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 17/123 (13%)

Query: 15   NSSLRQRVFQLKTDPT--------PIIPSIKLLSSDGELFEVDVEIAKQSVTLKIMLEN- 65
            N S R    ++   PT        P  P   L    G L +++  + ++S+T    L + 
Sbjct: 1128 NDSTRLTQAEISEQPTMATVVPQVPTSPKSSLSVQPGFLADLNRTLQRKSITRHGSLSSR 1187

Query: 66   -------LGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEK 118
                     MDD    P P P + +   K  +    I  + T ++  PP PP+ D+N + 
Sbjct: 1188 MSRAEPTATMDDMALPPPP-PELLSDQQKAGYGGSHISGYATLRRGPPPAPPKRDQNTKL 1246

Query: 119  RTD 121
              D
Sbjct: 1247 SRD 1249


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,876,126
Number of Sequences: 37866
Number of extensions: 433193
Number of successful extensions: 1619
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1569
Number of HSP's gapped (non-prelim): 29
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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