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Search of human proteins with 239753827
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753827 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
(202 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753827 PREDICTED: similar to S-phase kinase-associated pro... 410 e-115
gi|239748390 PREDICTED: hypothetical protein XP_002346652 [Homo ... 410 e-115
gi|239742318 PREDICTED: hypothetical protein XP_002342489 [Homo ... 410 e-115
gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo ... 236 1e-62
gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo ... 217 5e-57
gi|239755758 PREDICTED: similar to S-phase kinase-associated pro... 206 8e-54
gi|239750260 PREDICTED: similar to S-phase kinase-associated pro... 206 8e-54
gi|239744568 PREDICTED: similar to S-phase kinase-associated pro... 206 8e-54
gi|169213749 PREDICTED: similar to elongin C [Homo sapiens] 32 0.28
gi|169214183 PREDICTED: similar to elongin C [Homo sapiens] 32 0.28
gi|169213526 PREDICTED: similar to elongin C [Homo sapiens] 32 0.28
gi|5032161 elongin C [Homo sapiens] 32 0.48
gi|62543567 nudix (nucleoside diphosphate linked moiety X)-type ... 30 1.8
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 29 3.1
gi|112789555 ADAM metallopeptidase with thrombospondin type 1 mo... 29 3.1
gi|25777598 diacylglycerol kinase, delta 130kDa isoform 2 [Homo ... 28 4.1
gi|41281453 serine/threonine kinase 2 [Homo sapiens] 28 5.3
gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Hom... 28 5.3
gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Hom... 28 5.3
gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Hom... 28 5.3
gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Hom... 28 5.3
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 28 6.9
gi|47132519 Ras association and pleckstrin homology domains 1 is... 28 6.9
>gi|239753827 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
Length = 202
Score = 410 bits (1055), Expect = e-115
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK 60
MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK
Sbjct: 1 MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK 60
Query: 61 IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT 120
IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT
Sbjct: 61 IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT 120
Query: 121 DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL 180
DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL
Sbjct: 121 DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL 180
Query: 181 IPKLTLLEEAQIPKENQWCEET 202
IPKLTLLEEAQIPKENQWCEET
Sbjct: 181 IPKLTLLEEAQIPKENQWCEET 202
>gi|239748390 PREDICTED: hypothetical protein XP_002346652 [Homo
sapiens]
Length = 202
Score = 410 bits (1055), Expect = e-115
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK 60
MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK
Sbjct: 1 MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK 60
Query: 61 IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT 120
IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT
Sbjct: 61 IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT 120
Query: 121 DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL 180
DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL
Sbjct: 121 DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL 180
Query: 181 IPKLTLLEEAQIPKENQWCEET 202
IPKLTLLEEAQIPKENQWCEET
Sbjct: 181 IPKLTLLEEAQIPKENQWCEET 202
>gi|239742318 PREDICTED: hypothetical protein XP_002342489 [Homo
sapiens]
Length = 202
Score = 410 bits (1055), Expect = e-115
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK 60
MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK
Sbjct: 1 MPDMLMDKELREAVNSSLRQRVFQLKTDPTPIIPSIKLLSSDGELFEVDVEIAKQSVTLK 60
Query: 61 IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT 120
IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT
Sbjct: 61 IMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEKRT 120
Query: 121 DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL 180
DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL
Sbjct: 121 DAIPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPL 180
Query: 181 IPKLTLLEEAQIPKENQWCEET 202
IPKLTLLEEAQIPKENQWCEET
Sbjct: 181 IPKLTLLEEAQIPKENQWCEET 202
>gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo
sapiens]
Length = 163
Score = 236 bits (601), Expect = 1e-62
Identities = 123/170 (72%), Positives = 139/170 (81%), Gaps = 9/170 (5%)
Query: 33 IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENLGMDD-GDNDPVPLPNVNAAILKRSFR 91
+PSIKL SSDGE+FEVDVEIAKQSVT+K MLE+LGMDD GD+DPVPLPNVNAAILK+
Sbjct: 1 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKK--- 57
Query: 92 LGTIIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLDIK 151
+IQWCT+ KD+PPPP E DEN+EKRTD IP WDQ+FLK+D GTLFE+ILAANYLDIK
Sbjct: 58 ---VIQWCTHHKDDPPPP-EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 113
Query: 152 GLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKLTLLEEAQIPKENQWCEE 201
GLLDV CKTVA +IKGK PEEI + T EEAQ+ KENQWCEE
Sbjct: 114 GLLDVTCKTVANMIKGKTPEEI-RKTFNIKNDFTEEEEAQVRKENQWCEE 162
>gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo
sapiens]
Length = 160
Score = 217 bits (553), Expect = 5e-57
Identities = 117/168 (69%), Positives = 134/168 (79%), Gaps = 10/168 (5%)
Query: 33 IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENLGMDD-GDNDPVPLPNVNAAILKRSFR 91
+PSIKL SSDGE+FEVDVEIAKQSVT+K MLE+LGMDD GD+DPVPLPNVNAAILK+
Sbjct: 1 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKK--- 57
Query: 92 LGTIIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLDIK 151
+IQWCT+ KD+PPPP E DEN+EKRTD IP WDQ+FLK+D GTLFE+ILAANYLDIK
Sbjct: 58 ---VIQWCTHHKDDPPPP-EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 113
Query: 152 GLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKLTLLEEAQIPKENQWC 199
GLLDV CKTVA +IKGK PEEI + T EEAQ+ Q+C
Sbjct: 114 GLLDVTCKTVANMIKGKTPEEI-RKTFNIKNDFTEEEEAQV-GSTQFC 159
>gi|239755758 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
Length = 168
Score = 206 bits (525), Expect = 8e-54
Identities = 111/170 (65%), Positives = 131/170 (77%), Gaps = 9/170 (5%)
Query: 33 IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENLGM-DDGDNDPVPLPNVNAAILKRSFR 91
+PSIKL SS GE+FEVDVEI KQSVT+K MLE+LGM D+GD+DPVPLPNVNAAILK+
Sbjct: 1 MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKK--- 57
Query: 92 LGTIIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLDIK 151
+IQWCT+ +D+ PPP + EN+EKRTD IP WDQ+FLK+D GTLFE+ILAANYLDIK
Sbjct: 58 ---VIQWCTHHEDDSPPP-KVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 113
Query: 152 GLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKLTLLEEAQIPKENQWCEE 201
GLLDV CKTVA ++ K PEEI L T EAQ+ +ENQ CEE
Sbjct: 114 GLLDVTCKTVANMVNRKTPEEI-HKTFNLKNDFTEEWEAQVHQENQQCEE 162
>gi|239750260 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
Length = 168
Score = 206 bits (525), Expect = 8e-54
Identities = 111/170 (65%), Positives = 131/170 (77%), Gaps = 9/170 (5%)
Query: 33 IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENLGM-DDGDNDPVPLPNVNAAILKRSFR 91
+PSIKL SS GE+FEVDVEI KQSVT+K MLE+LGM D+GD+DPVPLPNVNAAILK+
Sbjct: 1 MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKK--- 57
Query: 92 LGTIIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLDIK 151
+IQWCT+ +D+ PPP + EN+EKRTD IP WDQ+FLK+D GTLFE+ILAANYLDIK
Sbjct: 58 ---VIQWCTHHEDDSPPP-KVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 113
Query: 152 GLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKLTLLEEAQIPKENQWCEE 201
GLLDV CKTVA ++ K PEEI L T EAQ+ +ENQ CEE
Sbjct: 114 GLLDVTCKTVANMVNRKTPEEI-HKTFNLKNDFTEEWEAQVHQENQQCEE 162
>gi|239744568 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
Length = 168
Score = 206 bits (525), Expect = 8e-54
Identities = 111/170 (65%), Positives = 131/170 (77%), Gaps = 9/170 (5%)
Query: 33 IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENLGM-DDGDNDPVPLPNVNAAILKRSFR 91
+PSIKL SS GE+FEVDVEI KQSVT+K MLE+LGM D+GD+DPVPLPNVNAAILK+
Sbjct: 1 MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKK--- 57
Query: 92 LGTIIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLDIK 151
+IQWCT+ +D+ PPP + EN+EKRTD IP WDQ+FLK+D GTLFE+ILAANYLDIK
Sbjct: 58 ---VIQWCTHHEDDSPPP-KVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 113
Query: 152 GLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKLTLLEEAQIPKENQWCEE 201
GLLDV CKTVA ++ K PEEI L T EAQ+ +ENQ CEE
Sbjct: 114 GLLDVTCKTVANMVNRKTPEEI-HKTFNLKNDFTEEWEAQVHQENQQCEE 162
>gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 32.3 bits (72), Expect = 0.28
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 20/115 (17%)
Query: 36 IKLLSSDGELFEVDVEIAKQSVTLKIMLENLG-MDDGDNDPVPLPNVNAAILKRSFRLGT 94
+KL+ SDG F V E A S T+K ML G + + D V + + +L + + L
Sbjct: 19 VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78
Query: 95 IIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLD 149
+ ++ PE + P E+++AAN+LD
Sbjct: 79 YFMYKVRYANSSTEIPE-------------------FPVAPEIALELLMAANFLD 114
>gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 32.3 bits (72), Expect = 0.28
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 20/115 (17%)
Query: 36 IKLLSSDGELFEVDVEIAKQSVTLKIMLENLG-MDDGDNDPVPLPNVNAAILKRSFRLGT 94
+KL+ SDG F V E A S T+K ML G + + D V + + +L + + L
Sbjct: 19 VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78
Query: 95 IIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLD 149
+ ++ PE + P E+++AAN+LD
Sbjct: 79 YFMYKVRYANSSTEIPE-------------------FPVAPEIALELLMAANFLD 114
>gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 32.3 bits (72), Expect = 0.28
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 20/115 (17%)
Query: 36 IKLLSSDGELFEVDVEIAKQSVTLKIMLENLG-MDDGDNDPVPLPNVNAAILKRSFRLGT 94
+KL+ SDG F V E A S T+K ML G + + D V + + +L + + L
Sbjct: 19 VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78
Query: 95 IIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLD 149
+ ++ PE + P E+++AAN+LD
Sbjct: 79 YFMYKVRYANSSTEIPE-------------------FPVAPEIALELLMAANFLD 114
>gi|5032161 elongin C [Homo sapiens]
Length = 112
Score = 31.6 bits (70), Expect = 0.48
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 23/115 (20%)
Query: 36 IKLLSSDGELFEVDVEIAKQSVTLKIMLENLG-MDDGDNDPVPLPNVNAAILKRSFRLGT 94
+KL+SSDG F V E A S T+K ML G + + + V + + +L + T
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 95 IIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLD 149
TN P P I P E+++AAN+LD
Sbjct: 79 YKVRYTNSSTEIPEFP----------------------IAPEIALELLMAANFLD 111
>gi|62543567 nudix (nucleoside diphosphate linked moiety X)-type
motif 17 [Homo sapiens]
Length = 328
Score = 29.6 bits (65), Expect = 1.8
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 123 IPAWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLP 179
IP + ++ GT F + L +L G PCK+ AYL G A EE + LP
Sbjct: 268 IPTMAEDKERVSTGTKFALKLWLQHL---GRTPPPCKSAAYLDPGPAKEEWNMDPLP 321
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 28.9 bits (63), Expect = 3.1
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 75 PVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPP 110
PVPLP +IL+ +W + ++ PPPPP
Sbjct: 593 PVPLPEKRRSILREP-----TFRWTSLTRELPPPPP 623
Score = 28.1 bits (61), Expect = 5.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 105 NPPPPPEADENEEKRTDAIPA 125
+PPPPP +E EE +PA
Sbjct: 443 SPPPPPAQEEQEESPPPVVPA 463
>gi|112789555 ADAM metallopeptidase with thrombospondin type 1
motif, 19 preproprotein [Homo sapiens]
Length = 1207
Score = 28.9 bits (63), Expect = 3.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 106 PPPPPEADENEEKRTDAIPAWDQKFLKIDPG 136
PPPP E +E+EE + +P + PG
Sbjct: 105 PPPPSEGEEDEELESQELPRGSSGAAALSPG 135
>gi|25777598 diacylglycerol kinase, delta 130kDa isoform 2 [Homo
sapiens]
Length = 1214
Score = 28.5 bits (62), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 106 PPPPPEADENEEKRTDAIPAWDQKFLK 132
PPPPP +E+ + +A P QK ++
Sbjct: 15 PPPPPPPEESSDSEPEAEPGSPQKLIR 41
>gi|41281453 serine/threonine kinase 2 [Homo sapiens]
Length = 1235
Score = 28.1 bits (61), Expect = 5.3
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 8 KELREAVNSSLRQRVFQLKTDPTPI-IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENL 66
KE+ ++ V T+P P+ IPSI + S GE E ++K L EN
Sbjct: 684 KEIPVSIKKEPEVTVVSQPTEPQPVLIPSININSDSGENKEEIGSLSKTETILPPESENP 743
Query: 67 GMDDGDN 73
+D D+
Sbjct: 744 KENDNDS 750
>gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Homo
sapiens]
Length = 3710
Score = 28.1 bits (61), Expect = 5.3
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 43 GELFEVDVEIAKQSVT--LKIMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCT 100
G+L + V +++ +T +KI+LENLG + + P P +V + R + ++
Sbjct: 1818 GKLKPMQVALSEDDLTVLMKILLENLG--EASSQPSPTQSVQETVRVRKVDVSSVPDHLK 1875
Query: 101 NQKD 104
Q+D
Sbjct: 1876 EQED 1879
>gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Homo
sapiens]
Length = 3585
Score = 28.1 bits (61), Expect = 5.3
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 43 GELFEVDVEIAKQSVT--LKIMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCT 100
G+L + V +++ +T +KI+LENLG + + P P +V + R + ++
Sbjct: 1818 GKLKPMQVALSEDDLTVLMKILLENLG--EASSQPSPTQSVQETVRVRKVDVSSVPDHLK 1875
Query: 101 NQKD 104
Q+D
Sbjct: 1876 EQED 1879
>gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Homo
sapiens]
Length = 3628
Score = 28.1 bits (61), Expect = 5.3
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 43 GELFEVDVEIAKQSVT--LKIMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCT 100
G+L + V +++ +T +KI+LENLG + + P P +V + R + ++
Sbjct: 1861 GKLKPMQVALSEDDLTVLMKILLENLG--EASSQPSPTQSVQETVRVRKVDVSSVPDHLK 1918
Query: 101 NQKD 104
Q+D
Sbjct: 1919 EQED 1922
>gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Homo
sapiens]
Length = 3753
Score = 28.1 bits (61), Expect = 5.3
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 43 GELFEVDVEIAKQSVT--LKIMLENLGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCT 100
G+L + V +++ +T +KI+LENLG + + P P +V + R + ++
Sbjct: 1861 GKLKPMQVALSEDDLTVLMKILLENLG--EASSQPSPTQSVQETVRVRKVDVSSVPDHLK 1918
Query: 101 NQKD 104
Q+D
Sbjct: 1919 EQED 1922
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 27.7 bits (60), Expect = 6.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 106 PPPPPEADENEEKRTDAIPAWDQKFL 131
PPPPP + E+R + P W ++L
Sbjct: 565 PPPPPPPPRSREQRRNYQPRWRGEYL 590
>gi|47132519 Ras association and pleckstrin homology domains 1 isoform
1 [Homo sapiens]
Length = 1250
Score = 27.7 bits (60), Expect = 6.9
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 17/123 (13%)
Query: 15 NSSLRQRVFQLKTDPT--------PIIPSIKLLSSDGELFEVDVEIAKQSVTLKIMLEN- 65
N S R ++ PT P P L G L +++ + ++S+T L +
Sbjct: 1128 NDSTRLTQAEISEQPTMATVVPQVPTSPKSSLSVQPGFLADLNRTLQRKSITRHGSLSSR 1187
Query: 66 -------LGMDDGDNDPVPLPNVNAAILKRSFRLGTIIQWCTNQKDNPPPPPEADENEEK 118
MDD P P P + + K + I + T ++ PP PP+ D+N +
Sbjct: 1188 MSRAEPTATMDDMALPPPP-PELLSDQQKAGYGGSHISGYATLRRGPPPAPPKRDQNTKL 1246
Query: 119 RTD 121
D
Sbjct: 1247 SRD 1249
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,876,126
Number of Sequences: 37866
Number of extensions: 433193
Number of successful extensions: 1619
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1569
Number of HSP's gapped (non-prelim): 29
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.