Search of human proteins with 239753617

Search of human proteins with 239753617

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753617 PREDICTED: similar to heat shock 70kD protein
binding protein [Homo sapiens]
         (183 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753617 PREDICTED: similar to heat shock 70kD protein bindi...   366   e-102
gi|19923193 heat shock 70kD protein binding protein [Homo sapiens]    108   3e-24
gi|55770884 ubiquitin associated domain containing 1 [Homo sapiens]    38   0.004
gi|5803181 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...    33   0.10 
gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]            30   1.5  
gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]            30   1.5  
gi|199559785 pseudouridylate synthase 3 [Homo sapiens]                 29   2.6  
gi|239754614 PREDICTED: hypothetical protein [Homo sapiens]            28   3.4  
gi|74048514 cancer susceptibility candidate 5 isoform 1 [Homo sa...    28   4.4  
gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]    28   5.7  
gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]    28   5.7  
gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]    28   5.7  
gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]    28   5.7  
gi|73623028 carnitine palmitoyltransferase 1A liver isoform 2 [H...    27   7.5  
gi|73623030 carnitine palmitoyltransferase 1A liver isoform 1 [H...    27   7.5  
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]           27   7.5  
gi|194097347 phosphoinositide-3-kinase, class 2 beta polypeptide...    27   9.8  
gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens]    27   9.8  
gi|29469071 Rho GTPase-activating protein isoform 2 [Homo sapiens]     27   9.8  

>gi|239753617 PREDICTED: similar to heat shock 70kD protein binding
           protein [Homo sapiens]
          Length = 183

 Score =  366 bits (939), Expect = e-102
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MQFSPPSLLEREGVGYRGARDASGGAHSYRDDVAANRRLPHYLRLSGVAPAKPGISARTP 60
           MQFSPPSLLEREGVGYRGARDASGGAHSYRDDVAANRRLPHYLRLSGVAPAKPGISARTP
Sbjct: 1   MQFSPPSLLEREGVGYRGARDASGGAHSYRDDVAANRRLPHYLRLSGVAPAKPGISARTP 60

Query: 61  TLKGTCLRLISVAGEELLIVTSTFRRAVLNIRSVHHRKVAERSNCEGLSSSIPKFWQIPS 120
           TLKGTCLRLISVAGEELLIVTSTFRRAVLNIRSVHHRKVAERSNCEGLSSSIPKFWQIPS
Sbjct: 61  TLKGTCLRLISVAGEELLIVTSTFRRAVLNIRSVHHRKVAERSNCEGLSSSIPKFWQIPS 120

Query: 121 PGKLYPLYEILSDPEVLAAMQDPEVMVAFQDVPQNPANMSKYQSNPKVMNLLSKLSAKFG 180
           PGKLYPLYEILSDPEVLAAMQDPEVMVAFQDVPQNPANMSKYQSNPKVMNLLSKLSAKFG
Sbjct: 121 PGKLYPLYEILSDPEVLAAMQDPEVMVAFQDVPQNPANMSKYQSNPKVMNLLSKLSAKFG 180

Query: 181 GQA 183
           GQA
Sbjct: 181 GQA 183


>gi|19923193 heat shock 70kD protein binding protein [Homo sapiens]
          Length = 369

 Score =  108 bits (269), Expect = 3e-24
 Identities = 55/66 (83%), Positives = 58/66 (87%)

Query: 118 IPSPGKLYPLYEILSDPEVLAAMQDPEVMVAFQDVPQNPANMSKYQSNPKVMNLLSKLSA 177
           +P    +  L EILSDPEVLAAMQDPEVMVAFQDV QNPANMSKYQSNPKVMNL+SKLSA
Sbjct: 304 MPGMAGMPGLNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSA 363

Query: 178 KFGGQA 183
           KFGGQA
Sbjct: 364 KFGGQA 369


>gi|55770884 ubiquitin associated domain containing 1 [Homo sapiens]
          Length = 405

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 8/69 (11%)

Query: 119 PSPGKL-------YPLYE-ILSDPEVLAAMQDPEVMVAFQDVPQNPANMSKYQSNPKVMN 170
           PSP +L        PL++ IL +P V   + +P+ ++AF+D+ +NP N +++ ++P+   
Sbjct: 331 PSPEELDKGIDPDSPLFQAILDNPVVQLGLTNPKTLLAFEDMLENPLNSTQWMNDPETGP 390

Query: 171 LLSKLSAKF 179
           ++ ++S  F
Sbjct: 391 VMLQISRIF 399


>gi|5803181 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing
           protein) [Homo sapiens]
          Length = 543

 Score = 33.5 bits (75), Expect = 0.10
 Identities = 13/45 (28%), Positives = 26/45 (57%)

Query: 131 LSDPEVLAAMQDPEVMVAFQDVPQNPANMSKYQSNPKVMNLLSKL 175
           ++DPEV   M DP + +  + + ++P  +S++  NP +   + KL
Sbjct: 490 MADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKL 534



 Score = 28.1 bits (61), Expect = 4.4
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 120 SPGKLYPLYEIL-SDPEVLAAMQDPEVMVAFQDVPQNPANMSKYQSNPKVMNLLSKL 175
           +P  +  LY+ L SDP     + DP      + +   P+++     +P++M  LS L
Sbjct: 126 NPFNMPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLSVL 182


>gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 837

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 13  GVGYRGARDASGGAHSYRDDVAANRRLPHYLRLSGVAPAKP--GISARTPTLKGTCLRLI 70
           G G  G+ +  G     R  V  + R P   R + +AP +P    SA +PT     L ++
Sbjct: 621 GAGGGGSGEGQGRGPGSRVSVRRSSRAPSSCRAASLAPPRPASATSAGSPTSPAPPLHMV 680

Query: 71  SVAG 74
           S  G
Sbjct: 681 STDG 684


>gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 837

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 13  GVGYRGARDASGGAHSYRDDVAANRRLPHYLRLSGVAPAKP--GISARTPTLKGTCLRLI 70
           G G  G+ +  G     R  V  + R P   R + +AP +P    SA +PT     L ++
Sbjct: 621 GAGGGGSGEGQGRGPGSRVSVRRSSRAPSSCRAASLAPPRPASATSAGSPTSPAPPLHMV 680

Query: 71  SVAG 74
           S  G
Sbjct: 681 STDG 684


>gi|199559785 pseudouridylate synthase 3 [Homo sapiens]
          Length = 481

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 17/55 (30%), Positives = 25/55 (45%)

Query: 11  REGVGYRGARDASGGAHSYRDDVAANRRLPHYLRLSGVAPAKPGISARTPTLKGT 65
           R+   +    +A+  A   R     NR LP  +R+   AP +P  SAR   L+ T
Sbjct: 140 RDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSARFSCLERT 194


>gi|239754614 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 490

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 9   LEREGVGYRGARDASGGAHSYRDDVAANRRLP---HYLRLSGVAPAKPGISARTPTLKGT 65
           LEREG        A  G H +   V     L    H L+ +     +PG   R+P    T
Sbjct: 415 LEREGAPGNCGVTAPPGGHIWLKQVEVQTHLENRCHRLKATVTTTTRPGAEPRSPPFIRT 474

Query: 66  CLRLISV 72
           C  +++V
Sbjct: 475 CGEIMNV 481


>gi|74048514 cancer susceptibility candidate 5 isoform 1 [Homo
           sapiens]
          Length = 2342

 Score = 28.1 bits (61), Expect = 4.4
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 83  TFRRAVLNIRSVHHRKVAERSNCEGLSSSIPKFWQIPSPGKLYPLYEILSDPE 135
           +F   +   ++  H K+  +S  EG S+ +P   Q+  PG  +  +  LS PE
Sbjct: 60  SFADTIKVFQTESHMKIVRKSEMEGCSAMVPSQLQLLPPG--FKRFSCLSLPE 110


>gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]
          Length = 1031

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 2/21 (9%)

Query: 108 LSSSIPKFWQIPS--PGKLYP 126
           LSS+IP FW +PS  P ++YP
Sbjct: 767 LSSTIPDFWGLPSCPPQQIYP 787


>gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]
          Length = 1006

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 2/21 (9%)

Query: 108 LSSSIPKFWQIPS--PGKLYP 126
           LSS+IP FW +PS  P ++YP
Sbjct: 742 LSSTIPDFWGLPSCPPQQIYP 762


>gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]
          Length = 1044

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 2/21 (9%)

Query: 108 LSSSIPKFWQIPS--PGKLYP 126
           LSS+IP FW +PS  P ++YP
Sbjct: 780 LSSTIPDFWGLPSCPPQQIYP 800


>gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]
          Length = 1079

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 2/21 (9%)

Query: 108 LSSSIPKFWQIPS--PGKLYP 126
           LSS+IP FW +PS  P ++YP
Sbjct: 815 LSSTIPDFWGLPSCPPQQIYP 835


>gi|73623028 carnitine palmitoyltransferase 1A liver isoform 2 [Homo
           sapiens]
          Length = 756

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 112 IPKFWQIPSPGKLYPLYEILSDPEVLAAMQDPEVMVAFQDVPQNPANMS 160
           + K+  + SP     L E+LS+P  L+  Q P+  V   D+  NP  +S
Sbjct: 663 VSKYLAVESPF----LKEVLSEPWRLSTSQTPQQQVELFDLENNPEYVS 707


>gi|73623030 carnitine palmitoyltransferase 1A liver isoform 1 [Homo
           sapiens]
          Length = 773

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 112 IPKFWQIPSPGKLYPLYEILSDPEVLAAMQDPEVMVAFQDVPQNPANMS 160
           + K+  + SP     L E+LS+P  L+  Q P+  V   D+  NP  +S
Sbjct: 663 VSKYLAVESPF----LKEVLSEPWRLSTSQTPQQQVELFDLENNPEYVS 707


>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
          Length = 1006

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 30  RDDVAANRRLPHYLRLSGVAPAKPGISARTPTLKG 64
           R D+  + RL H L L G   A PG+ ARTP  +G
Sbjct: 866 RGDLLEHFRLAHGLLL-GAPLAGPGVEARTPADRG 899


>gi|194097347 phosphoinositide-3-kinase, class 2 beta polypeptide
           [Homo sapiens]
          Length = 1634

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 137 LAAMQDPEVMVAFQDVPQNPANMS-KYQSNPKVM 169
           LAA++ PE+  A   +P  P+ M  K Q +P V+
Sbjct: 543 LAAVETPEITSALNQLPPCPSRMQPKIQKDPSVL 576


>gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens]
          Length = 2087

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 115 FWQIPSPGKLYPLYEILSDPEVLAAMQDPEVMVAFQDVPQ 154
           F ++P+P   Y LYE  SD   ++A  D E ++   DV Q
Sbjct: 450 FRELPNPLLTYQLYEKFSD--AVSAATDEERLIKIHDVIQ 487


>gi|29469071 Rho GTPase-activating protein isoform 2 [Homo sapiens]
          Length = 1738

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 115 FWQIPSPGKLYPLYEILSDPEVLAAMQDPEVMVAFQDVPQ 154
           F ++P+P   Y LYE  SD   ++A  D E ++   DV Q
Sbjct: 101 FRELPNPLLTYQLYEKFSD--AVSAATDEERLIKIHDVIQ 138


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,133,996
Number of Sequences: 37866
Number of extensions: 299340
Number of successful extensions: 718
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 22
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.