Guide to the Human Genome
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Name: LOC100293667 Sequence: fasta or formatted (314aa) NCBI GI: 239753502
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         16           1
 C cysteine            2.9          9           2
 D aspartate           2.9          9           1
 E glutamate           3.8         12           1
 F phenylalanine       4.5         14           2
 G glycine             6.7         21           2
 H histidine           4.1         13           2
 I isoleucine          4.1         13           2
 K lysine              3.8         12           1
 L leucine            13.1         41           4
 M methionine          2.2          7           1
 N asparagine          3.5         11           2
 P proline             6.1         19           3
 Q glutamine           4.1         13           1
 R arginine            7.6         24           4
 S serine             12.7         40           3
 T threonine           3.2         10           2
 V valine              6.4         20           1
 W tryptophan          1.0          3           1
 Y tyrosine            2.2          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290280          0.426   PREDICTED: hypothetical protein XP_002346544 
LOC100287879          0.426   PREDICTED: hypothetical protein XP_002342382 
PCDH7                 0.021   protocadherin 7 isoform c precursor 
LPIN3                 0.010   lipin 3 
LOC100291076          0.010   PREDICTED: hypothetical protein XP_002347846 
MARCH4                0.008   membrane-associated ring finger (C3HC4) 4 
SCAF1                 0.007   SR-related CTD-associated factor 1 
ADRA2C                0.007   alpha-2C-adrenergic receptor 
LOC100293985          0.005   PREDICTED: hypothetical protein 
LOC100289986          0.005   PREDICTED: hypothetical protein XP_002346657 
LOC100288009          0.005   PREDICTED: hypothetical protein XP_002342502 
UHRF1BP1L             0.005   UHRF1 (ICBP90) binding protein 1-like isoform a [Hom...
WDR5B                 0.005   WD repeat domain 5B 
MOSPD1                0.005   motile sperm domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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