Search of human proteins with 239753502

Search of human proteins with 239753502

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753502 PREDICTED: hypothetical protein [Homo sapiens]
         (314 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753502 PREDICTED: hypothetical protein [Homo sapiens]           636   0.0  
gi|239748161 PREDICTED: hypothetical protein XP_002346544 [Homo ...   285   5e-77
gi|239742059 PREDICTED: hypothetical protein XP_002342382 [Homo ...   285   5e-77
gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens]         38   0.010
gi|74271888 lipin 3 [Homo sapiens]                                     31   1.2  
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ...    31   1.6  
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi...    30   2.8  
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]         29   4.7  
gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens]                29   6.2  
gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]            28   8.1  
gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo ...    28   8.1  
gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo ...    28   8.1  
gi|55749644 UHRF1 (ICBP90) binding protein 1-like isoform a [Hom...    28   8.1  
gi|23199987 WD repeat domain 5B [Homo sapiens]                         28   8.1  
gi|9506543 motile sperm domain containing 1 [Homo sapiens]             28   8.1  

>gi|239753502 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 314

 Score =  636 bits (1640), Expect = 0.0
 Identities = 314/314 (100%), Positives = 314/314 (100%)

Query: 1   MHSRHLKILSHHCCPVTILHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL 60
           MHSRHLKILSHHCCPVTILHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL
Sbjct: 1   MHSRHLKILSHHCCPVTILHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL 60

Query: 61  CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNSTHLV 120
           CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNSTHLV
Sbjct: 61  CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNSTHLV 120

Query: 121 TSWQVHSLLFSAIGGLEMNWEGLPGEGALTTNMTRLKNNGSGLKHRIEMVDILGSSINII 180
           TSWQVHSLLFSAIGGLEMNWEGLPGEGALTTNMTRLKNNGSGLKHRIEMVDILGSSINII
Sbjct: 121 TSWQVHSLLFSAIGGLEMNWEGLPGEGALTTNMTRLKNNGSGLKHRIEMVDILGSSINII 180

Query: 181 DLSKLQASYEVQHSTVFRKYVLNELGGIQEKMSGHKAKAFLKDCYFFERGIAPSSSHVGP 240
           DLSKLQASYEVQHSTVFRKYVLNELGGIQEKMSGHKAKAFLKDCYFFERGIAPSSSHVGP
Sbjct: 181 DLSKLQASYEVQHSTVFRKYVLNELGGIQEKMSGHKAKAFLKDCYFFERGIAPSSSHVGP 240

Query: 241 QLYVGHILLQLVDWVIKSTVALVLQDGAQAPRPGEAFPEVSSRGRCRRRRDRKPGRRRPG 300
           QLYVGHILLQLVDWVIKSTVALVLQDGAQAPRPGEAFPEVSSRGRCRRRRDRKPGRRRPG
Sbjct: 241 QLYVGHILLQLVDWVIKSTVALVLQDGAQAPRPGEAFPEVSSRGRCRRRRDRKPGRRRPG 300

Query: 301 VFADSSRFRCRSRS 314
           VFADSSRFRCRSRS
Sbjct: 301 VFADSSRFRCRSRS 314


>gi|239748161 PREDICTED: hypothetical protein XP_002346544 [Homo
           sapiens]
          Length = 145

 Score =  285 bits (728), Expect = 5e-77
 Identities = 138/140 (98%), Positives = 138/140 (98%)

Query: 1   MHSRHLKILSHHCCPVTILHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL 60
           MHSRHLKILSHHCCPVT LHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL
Sbjct: 1   MHSRHLKILSHHCCPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL 60

Query: 61  CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNSTHLV 120
           CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNST LV
Sbjct: 61  CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNSTQLV 120

Query: 121 TSWQVHSLLFSAIGGLEMNW 140
           TSWQVHSLLFSAIGGLEMNW
Sbjct: 121 TSWQVHSLLFSAIGGLEMNW 140


>gi|239742059 PREDICTED: hypothetical protein XP_002342382 [Homo
           sapiens]
          Length = 145

 Score =  285 bits (728), Expect = 5e-77
 Identities = 138/140 (98%), Positives = 138/140 (98%)

Query: 1   MHSRHLKILSHHCCPVTILHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL 60
           MHSRHLKILSHHCCPVT LHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL
Sbjct: 1   MHSRHLKILSHHCCPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL 60

Query: 61  CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNSTHLV 120
           CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNST LV
Sbjct: 61  CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNSTQLV 120

Query: 121 TSWQVHSLLFSAIGGLEMNW 140
           TSWQVHSLLFSAIGGLEMNW
Sbjct: 121 TSWQVHSLLFSAIGGLEMNW 140


>gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens]
          Length = 1200

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 3    SRHLKILSHHCCPVTILHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLLCK 62
            +RH K  S    P   LH  +  + +   +   LPP NTF     ++++ S  C    C+
Sbjct: 946  ARHYK--SSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGAGDNISIGSDHCSEYSCQ 1003

Query: 63   SNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSS 107
            +N+      F  +  S+   PQD    +L   +  GL+  +  SS
Sbjct: 1004 TNNKYSKQPFRRVTFSVVSQPQDPHQGSLQSCYDSGLEESETPSS 1048


>gi|74271888 lipin 3 [Homo sapiens]
          Length = 851

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 226 FFERGIAPSSSHVGPQLYVGHILLQLVDWVIKSTVALVLQDGAQAPRPGEAFPEVSSRGR 285
           FF + +     HV P L    I      W   S      Q G  +   G      +S GR
Sbjct: 87  FFVQELESDDEHVPPGLCTSPI-----PWGGLSGFPSDSQLGTASEPEGLVMAGTASTGR 141

Query: 286 CRRRRDRKPGRRRPGVFADSS 306
            +RRR RKP ++   V  DSS
Sbjct: 142 RKRRRRRKPKQKEDAVATDSS 162


>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
           sapiens]
          Length = 870

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 15/93 (16%)

Query: 232 APSSSHVGPQLYVGHILLQLVDWVIKSTVALV-LQDGAQAP------RPGEAFPEVSSRG 284
           AP   H G      H+ LQL+D  ++  +  V L  G +A       R GE  P   +RG
Sbjct: 401 APWGVHPGQ-----HLPLQLIDLALQQILEAVGLAGGIEAAVLLRGARAGETTPLGEARG 455

Query: 285 RCRRRRDRKPG---RRRPGVFADSSRFRCRSRS 314
            C + R   P    R RPG  A +S  R  S++
Sbjct: 456 PCWKARGAVPSGRLRGRPGRVAGASGRRGASQA 488


>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
           sapiens]
          Length = 410

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 9   LSHHCCPVTILHVNASLSLELSLSYSQLPPPNTFRAQVFSVT 50
           LSHH C  TILH+ + L       + Q  PP + R  V  VT
Sbjct: 372 LSHHHCAYTILHILSHLR-----PHEQRSPPGSSRELVMRVT 408


>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
          Length = 1312

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 267 GAQAPRPGEAFPEVSSRGRCRRRRDRKPGRRRPGVFADSSRFRCRSRS 314
           G Q   P  A P  S +    R RDRKPG          SR R RSRS
Sbjct: 538 GTQPAPPAPASPWDSKK---HRSRDRKPGSHASSSARRRSRSRSRSRS 582


>gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens]
          Length = 462

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 265 QDGAQAPRPGEAFPEVSSRGRCRRRRD---RKPGRRRPG 300
           ++G  AP P +  P+ SS    RRRR    R+ GRRR G
Sbjct: 272 ENGHCAPPPADVEPDESSAAAERRRRRGALRRGGRRRAG 310


>gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 215

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 267 GAQAPRPGEAF-----PEVSSRGRCRRRRDRKPGRRRP 299
           GA  PRPG A      P    RG  R  R R+PGRR P
Sbjct: 172 GAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPGRRGP 209


>gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo
           sapiens]
          Length = 215

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 267 GAQAPRPGEAF-----PEVSSRGRCRRRRDRKPGRRRP 299
           GA  PRPG A      P    RG  R  R R+PGRR P
Sbjct: 172 GAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPGRRGP 209


>gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo
           sapiens]
          Length = 215

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 267 GAQAPRPGEAF-----PEVSSRGRCRRRRDRKPGRRRP 299
           GA  PRPG A      P    RG  R  R R+PGRR P
Sbjct: 172 GAVRPRPGLAARLGSRPSGPLRGAGRGARVRRPGRRGP 209


>gi|55749644 UHRF1 (ICBP90) binding protein 1-like isoform a [Homo
            sapiens]
          Length = 1464

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 19/202 (9%)

Query: 23   ASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLLCKSN-SPLCPVLFSSLLHSIPR 81
            ASLS  L +S  + PP  T ++Q    +L+  P     C  N +PLC V + ++  S  +
Sbjct: 1057 ASLSENLDISKEETPPVRTLKSQ---SSLSGKP--KERCPPNLAPLC-VSYKNMKRSSSQ 1110

Query: 82   LPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNSTHLVTSWQVHSLLFSAIGGLEMNWE 141
            +  D + S  +      L     S S+ F++  N  +  T+++  +   +A   L+   E
Sbjct: 1111 MSLDTI-SLDSMILEEQLLESDGSDSHMFLEKGNKKNSTTNYRGTAESVNAGANLQNYGE 1169

Query: 142  GLPGEGALTTNMTRLKNNGSGLKHRIEM--------VDILGSSINIIDLSKLQASYEVQH 193
              P   A++TN    + N   L   +          +DI G    I  L   Q + +   
Sbjct: 1170 TSP--DAISTNSEGAQENHDDLMSVVVFKITGVNGEIDIRGEDTEIC-LQVNQVTPDQLG 1226

Query: 194  STVFRKYVLNELGGIQEKMSGH 215
            +   R Y+ N   G  +K   H
Sbjct: 1227 NISLRHYLCNRPVGSDQKAVIH 1248


>gi|23199987 WD repeat domain 5B [Homo sapiens]
          Length = 330

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 6   LKILSHHCCPVTILHVNASLSLELSLSYSQL 36
           LK LS H  PV+ +H N S SL +S SY  L
Sbjct: 160 LKTLSAHSDPVSAVHFNCSGSLIVSGSYDGL 190


>gi|9506543 motile sperm domain containing 1 [Homo sapiens]
          Length = 213

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 163 LKHRIEMVDILGSSINIIDLSKLQASYEVQHSTVFRKYVLNEL----GGIQEKMSGHKAK 218
           ++HR    D+      +ID  +LQ S + Q   + RK V+  L       Q++    + K
Sbjct: 79  IRHR----DVRSCHYGVIDKFRLQVSEQSQRKALGRKEVVATLLPSAKEQQKEEEEKRLK 134

Query: 219 AFLKDCYFFERGIAPSSSHV--GPQL 242
             L +  FFE+   P +  V  GP L
Sbjct: 135 EHLTESLFFEQSFQPENRAVSSGPSL 160


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,840,559
Number of Sequences: 37866
Number of extensions: 571205
Number of successful extensions: 1577
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1568
Number of HSP's gapped (non-prelim): 18
length of query: 314
length of database: 18,247,518
effective HSP length: 102
effective length of query: 212
effective length of database: 14,385,186
effective search space: 3049659432
effective search space used: 3049659432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.