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Search of human proteins with 239753196
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753196 PREDICTED: hypothetical protein [Homo sapiens]
(406 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753196 PREDICTED: hypothetical protein [Homo sapiens] 838 0.0
gi|239747770 PREDICTED: hypothetical protein XP_002348262 [Homo ... 838 0.0
gi|239741636 PREDICTED: hypothetical protein XP_002342253 [Homo ... 838 0.0
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 37 0.042
gi|169160855 PREDICTED: hypothetical protein [Homo sapiens] 31 1.8
gi|239747383 PREDICTED: hypothetical protein [Homo sapiens] 31 1.8
gi|239741208 PREDICTED: hypothetical protein [Homo sapiens] 31 1.8
gi|239755326 PREDICTED: hypothetical protein [Homo sapiens] 31 2.3
gi|31543543 retinoic acid induced 17 [Homo sapiens] 31 2.3
gi|169213999 PREDICTED: similar to hCG1778601 isoform 1 [Homo sa... 30 3.0
gi|169214410 PREDICTED: similar to hCG1778601 isoform 1 [Homo sa... 30 3.0
gi|169213416 PREDICTED: hypothetical protein LOC388559 [Homo sap... 30 3.0
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 30 3.0
gi|209954795 zinc finger protein 761 [Homo sapiens] 30 3.0
gi|189181750 human immunodeficiency virus type I enhancer bindin... 30 3.0
gi|116089331 human immunodeficiency virus type I enhancer bindin... 30 3.0
gi|221219015 olfactory receptor, family 52, subfamily L, member ... 30 3.9
gi|11034821 zinc finger protein 71 [Homo sapiens] 30 3.9
gi|118600981 jumonji domain containing 1C isoform a [Homo sapiens] 30 3.9
gi|68342036 jumonji domain containing 1C isoform b [Homo sapiens] 30 3.9
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 30 5.1
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 30 5.1
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 30 5.1
gi|38201677 teashirt family zinc finger 1 [Homo sapiens] 30 5.1
gi|32261309 G protein-coupled receptor 135 [Homo sapiens] 30 5.1
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens] 30 5.1
gi|125490356 zinc finger protein 517 [Homo sapiens] 30 5.1
gi|239753324 PREDICTED: hypothetical protein [Homo sapiens] 29 6.7
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 29 6.7
gi|148233596 LPS-responsive vesicle trafficking, beach and ancho... 29 6.7
>gi|239753196 PREDICTED: hypothetical protein [Homo sapiens]
Length = 406
Score = 838 bits (2164), Expect = 0.0
Identities = 406/406 (100%), Positives = 406/406 (100%)
Query: 1 MFLAEYPGPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSCSTATTHVKCFLQ 60
MFLAEYPGPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSCSTATTHVKCFLQ
Sbjct: 1 MFLAEYPGPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSCSTATTHVKCFLQ 60
Query: 61 SRSVSDTCVPGQILDGLGERLHIDSLIQLILVQQFNEEIQGALMGTHLRIQVPICQHLHH 120
SRSVSDTCVPGQILDGLGERLHIDSLIQLILVQQFNEEIQGALMGTHLRIQVPICQHLHH
Sbjct: 61 SRSVSDTCVPGQILDGLGERLHIDSLIQLILVQQFNEEIQGALMGTHLRIQVPICQHLHH 120
Query: 121 LLSTQSSIHLCYGEDREKGCWKGLSPLFSHLLVQSGHLNGISSISHLLHIAFLCLQRLLG 180
LLSTQSSIHLCYGEDREKGCWKGLSPLFSHLLVQSGHLNGISSISHLLHIAFLCLQRLLG
Sbjct: 121 LLSTQSSIHLCYGEDREKGCWKGLSPLFSHLLVQSGHLNGISSISHLLHIAFLCLQRLLG 180
Query: 181 FLRKKWRPYLGWGRKRGDCSRREDPAGKRAKVKVVPLDSPLKQLFVISPDLATLSMPLWG 240
FLRKKWRPYLGWGRKRGDCSRREDPAGKRAKVKVVPLDSPLKQLFVISPDLATLSMPLWG
Sbjct: 181 FLRKKWRPYLGWGRKRGDCSRREDPAGKRAKVKVVPLDSPLKQLFVISPDLATLSMPLWG 240
Query: 241 RGEDPLDVGIFGYQKRLMPMLRKTKYQHISCTCDRHVHTCTDTKEGREYLGLAHKDAMPF 300
RGEDPLDVGIFGYQKRLMPMLRKTKYQHISCTCDRHVHTCTDTKEGREYLGLAHKDAMPF
Sbjct: 241 RGEDPLDVGIFGYQKRLMPMLRKTKYQHISCTCDRHVHTCTDTKEGREYLGLAHKDAMPF 300
Query: 301 ITSEVLPALNSSIIFALCFIQNHAYPFASGKQCGSNIGHSASVAFSNHLYTGAHPQRPGA 360
ITSEVLPALNSSIIFALCFIQNHAYPFASGKQCGSNIGHSASVAFSNHLYTGAHPQRPGA
Sbjct: 301 ITSEVLPALNSSIIFALCFIQNHAYPFASGKQCGSNIGHSASVAFSNHLYTGAHPQRPGA 360
Query: 361 CLRTHPAAAGRPLTRLYTCLLLCAMLLTRPLPPPPAGQRQREKVET 406
CLRTHPAAAGRPLTRLYTCLLLCAMLLTRPLPPPPAGQRQREKVET
Sbjct: 361 CLRTHPAAAGRPLTRLYTCLLLCAMLLTRPLPPPPAGQRQREKVET 406
>gi|239747770 PREDICTED: hypothetical protein XP_002348262 [Homo
sapiens]
Length = 406
Score = 838 bits (2164), Expect = 0.0
Identities = 406/406 (100%), Positives = 406/406 (100%)
Query: 1 MFLAEYPGPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSCSTATTHVKCFLQ 60
MFLAEYPGPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSCSTATTHVKCFLQ
Sbjct: 1 MFLAEYPGPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSCSTATTHVKCFLQ 60
Query: 61 SRSVSDTCVPGQILDGLGERLHIDSLIQLILVQQFNEEIQGALMGTHLRIQVPICQHLHH 120
SRSVSDTCVPGQILDGLGERLHIDSLIQLILVQQFNEEIQGALMGTHLRIQVPICQHLHH
Sbjct: 61 SRSVSDTCVPGQILDGLGERLHIDSLIQLILVQQFNEEIQGALMGTHLRIQVPICQHLHH 120
Query: 121 LLSTQSSIHLCYGEDREKGCWKGLSPLFSHLLVQSGHLNGISSISHLLHIAFLCLQRLLG 180
LLSTQSSIHLCYGEDREKGCWKGLSPLFSHLLVQSGHLNGISSISHLLHIAFLCLQRLLG
Sbjct: 121 LLSTQSSIHLCYGEDREKGCWKGLSPLFSHLLVQSGHLNGISSISHLLHIAFLCLQRLLG 180
Query: 181 FLRKKWRPYLGWGRKRGDCSRREDPAGKRAKVKVVPLDSPLKQLFVISPDLATLSMPLWG 240
FLRKKWRPYLGWGRKRGDCSRREDPAGKRAKVKVVPLDSPLKQLFVISPDLATLSMPLWG
Sbjct: 181 FLRKKWRPYLGWGRKRGDCSRREDPAGKRAKVKVVPLDSPLKQLFVISPDLATLSMPLWG 240
Query: 241 RGEDPLDVGIFGYQKRLMPMLRKTKYQHISCTCDRHVHTCTDTKEGREYLGLAHKDAMPF 300
RGEDPLDVGIFGYQKRLMPMLRKTKYQHISCTCDRHVHTCTDTKEGREYLGLAHKDAMPF
Sbjct: 241 RGEDPLDVGIFGYQKRLMPMLRKTKYQHISCTCDRHVHTCTDTKEGREYLGLAHKDAMPF 300
Query: 301 ITSEVLPALNSSIIFALCFIQNHAYPFASGKQCGSNIGHSASVAFSNHLYTGAHPQRPGA 360
ITSEVLPALNSSIIFALCFIQNHAYPFASGKQCGSNIGHSASVAFSNHLYTGAHPQRPGA
Sbjct: 301 ITSEVLPALNSSIIFALCFIQNHAYPFASGKQCGSNIGHSASVAFSNHLYTGAHPQRPGA 360
Query: 361 CLRTHPAAAGRPLTRLYTCLLLCAMLLTRPLPPPPAGQRQREKVET 406
CLRTHPAAAGRPLTRLYTCLLLCAMLLTRPLPPPPAGQRQREKVET
Sbjct: 361 CLRTHPAAAGRPLTRLYTCLLLCAMLLTRPLPPPPAGQRQREKVET 406
>gi|239741636 PREDICTED: hypothetical protein XP_002342253 [Homo
sapiens]
Length = 406
Score = 838 bits (2164), Expect = 0.0
Identities = 406/406 (100%), Positives = 406/406 (100%)
Query: 1 MFLAEYPGPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSCSTATTHVKCFLQ 60
MFLAEYPGPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSCSTATTHVKCFLQ
Sbjct: 1 MFLAEYPGPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSCSTATTHVKCFLQ 60
Query: 61 SRSVSDTCVPGQILDGLGERLHIDSLIQLILVQQFNEEIQGALMGTHLRIQVPICQHLHH 120
SRSVSDTCVPGQILDGLGERLHIDSLIQLILVQQFNEEIQGALMGTHLRIQVPICQHLHH
Sbjct: 61 SRSVSDTCVPGQILDGLGERLHIDSLIQLILVQQFNEEIQGALMGTHLRIQVPICQHLHH 120
Query: 121 LLSTQSSIHLCYGEDREKGCWKGLSPLFSHLLVQSGHLNGISSISHLLHIAFLCLQRLLG 180
LLSTQSSIHLCYGEDREKGCWKGLSPLFSHLLVQSGHLNGISSISHLLHIAFLCLQRLLG
Sbjct: 121 LLSTQSSIHLCYGEDREKGCWKGLSPLFSHLLVQSGHLNGISSISHLLHIAFLCLQRLLG 180
Query: 181 FLRKKWRPYLGWGRKRGDCSRREDPAGKRAKVKVVPLDSPLKQLFVISPDLATLSMPLWG 240
FLRKKWRPYLGWGRKRGDCSRREDPAGKRAKVKVVPLDSPLKQLFVISPDLATLSMPLWG
Sbjct: 181 FLRKKWRPYLGWGRKRGDCSRREDPAGKRAKVKVVPLDSPLKQLFVISPDLATLSMPLWG 240
Query: 241 RGEDPLDVGIFGYQKRLMPMLRKTKYQHISCTCDRHVHTCTDTKEGREYLGLAHKDAMPF 300
RGEDPLDVGIFGYQKRLMPMLRKTKYQHISCTCDRHVHTCTDTKEGREYLGLAHKDAMPF
Sbjct: 241 RGEDPLDVGIFGYQKRLMPMLRKTKYQHISCTCDRHVHTCTDTKEGREYLGLAHKDAMPF 300
Query: 301 ITSEVLPALNSSIIFALCFIQNHAYPFASGKQCGSNIGHSASVAFSNHLYTGAHPQRPGA 360
ITSEVLPALNSSIIFALCFIQNHAYPFASGKQCGSNIGHSASVAFSNHLYTGAHPQRPGA
Sbjct: 301 ITSEVLPALNSSIIFALCFIQNHAYPFASGKQCGSNIGHSASVAFSNHLYTGAHPQRPGA 360
Query: 361 CLRTHPAAAGRPLTRLYTCLLLCAMLLTRPLPPPPAGQRQREKVET 406
CLRTHPAAAGRPLTRLYTCLLLCAMLLTRPLPPPPAGQRQREKVET
Sbjct: 361 CLRTHPAAAGRPLTRLYTCLLLCAMLLTRPLPPPPAGQRQREKVET 406
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 36.6 bits (83), Expect = 0.042
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 193 GRKRGDCSRREDPAGKRAKVKVVPLDSPLKQLFVISPDL 231
GR G CS +++ G AK K +P P+ LF SPDL
Sbjct: 1274 GRGGGACSAKKERGGAAAKAKFIPKPQPVNPLFQDSPDL 1312
>gi|169160855 PREDICTED: hypothetical protein [Homo sapiens]
Length = 321
Score = 31.2 bits (69), Expect = 1.8
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 11 RPTCSLALKASSSRAATSSPS--FSASGAMSWAAAAATSCSTATT-------HVK----- 56
RP L+ SS ++SS S FS SG +S + +C+T +T H +
Sbjct: 230 RPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLE 289
Query: 57 ---CFLQSRSVSDTCVPGQILDGL 77
CF S + C+ G + GL
Sbjct: 290 VTACFTNPTSYATACIQGDVATGL 313
>gi|239747383 PREDICTED: hypothetical protein [Homo sapiens]
Length = 291
Score = 31.2 bits (69), Expect = 1.8
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 11 RPTCSLALKASSSRAATSSPS--FSASGAMSWAAAAATSCSTATT-------HVK----- 56
RP L+ SS ++SS S FS SG +S + +C+T +T H +
Sbjct: 200 RPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLE 259
Query: 57 ---CFLQSRSVSDTCVPGQILDGL 77
CF S + C+ G + GL
Sbjct: 260 VTACFTNPTSYATACIQGDVATGL 283
>gi|239741208 PREDICTED: hypothetical protein [Homo sapiens]
Length = 291
Score = 31.2 bits (69), Expect = 1.8
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 11 RPTCSLALKASSSRAATSSPS--FSASGAMSWAAAAATSCSTATT-------HVK----- 56
RP L+ SS ++SS S FS SG +S + +C+T +T H +
Sbjct: 200 RPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLE 259
Query: 57 ---CFLQSRSVSDTCVPGQILDGL 77
CF S + C+ G + GL
Sbjct: 260 VTACFTNPTSYATACIQGDVATGL 283
>gi|239755326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 30.8 bits (68), Expect = 2.3
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 8 GPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSC----STATTHVKCFLQSRS 63
G S +CS +SS + S S ++S + SW ++ +S S+ T+ C QS
Sbjct: 219 GTSSTSCSCQSSGTSSTCSCQS-SGTSSTSCSWQSSRTSSTCSCQSSGTSSTSCSCQSSG 277
Query: 64 VSDTC 68
S TC
Sbjct: 278 TSSTC 282
Score = 30.4 bits (67), Expect = 3.0
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 8 GPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSC---STATTHVKCFLQSRSV 64
G S +CS +SS + S S++ ++ +++C S+ T+ C QS
Sbjct: 242 GTSSTSCSWQSSRTSSTCSCQSSGTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSCQSSRT 301
Query: 65 SDTC 68
S TC
Sbjct: 302 SSTC 305
Score = 30.4 bits (67), Expect = 3.0
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 8 GPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSCS---TATTHVKCFLQSRSV 64
G S +CS +SS + S S++ ++ +++CS + T+ C QS
Sbjct: 265 GTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSCQSSRTSSTCSCQFSRTSSTSCSCQSSRT 324
Query: 65 SDTC 68
S TC
Sbjct: 325 SSTC 328
Score = 28.9 bits (63), Expect = 8.7
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 11 RPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSC-STATTHVKCFLQSRSVSDTC 68
+ C +SSS + SS + S S ++ SC S+ T+ C QS S TC
Sbjct: 5 KAACKQHRASSSSCSCQSSQTSSTCSCQSSQTSSTCSCQSSGTSSTSCNWQSSRTSSTC 63
>gi|31543543 retinoic acid induced 17 [Homo sapiens]
Length = 1067
Score = 30.8 bits (68), Expect = 2.3
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 2 FLAEYPGPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSCSTATTHVKCFLQS 61
F A YPG + + + A + +A+ A + AAAAAT+ +TAT V ++
Sbjct: 250 FGASYPGGPNAPAGMGIPPHTRPPADFTQPAAAAAAAAVAAAAATATATATATVAALQET 309
Query: 62 RS 63
++
Sbjct: 310 QN 311
>gi|169213999 PREDICTED: similar to hCG1778601 isoform 1 [Homo
sapiens]
Length = 700
Score = 30.4 bits (67), Expect = 3.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 332 QCGSNIGHSASVAFSNHLYTGAHPQRPGAC 361
+CG + H +S+A+ + L+TG P + C
Sbjct: 536 ECGKSFNHKSSLAYHHRLHTGEKPYKCNEC 565
>gi|169214410 PREDICTED: similar to hCG1778601 isoform 1 [Homo
sapiens]
Length = 700
Score = 30.4 bits (67), Expect = 3.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 332 QCGSNIGHSASVAFSNHLYTGAHPQRPGAC 361
+CG + H +S+A+ + L+TG P + C
Sbjct: 536 ECGKSFNHKSSLAYHHRLHTGEKPYKCNEC 565
>gi|169213416 PREDICTED: hypothetical protein LOC388559 [Homo
sapiens]
Length = 700
Score = 30.4 bits (67), Expect = 3.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 332 QCGSNIGHSASVAFSNHLYTGAHPQRPGAC 361
+CG + H +S+A+ + L+TG P + C
Sbjct: 536 ECGKSFNHKSSLAYHHRLHTGEKPYKCNEC 565
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 8 GPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSC----STATTHVKCFLQSRS 63
G S +CS +SS + S S ++S + SW ++ +S S+ T+ C QS
Sbjct: 219 GTSSTSCSCQSSGTSSTCSCQS-SGTSSTSCSWQSSRTSSTCSCQSSRTSSTSCSCQSSG 277
Query: 64 VSDTC 68
S TC
Sbjct: 278 TSSTC 282
Score = 30.0 bits (66), Expect = 3.9
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 11 RPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSC-STATTHVKCFLQSRSVSDTC 68
+ C +SSS + SS + S S ++ SC S+ T+ C QS +S TC
Sbjct: 5 KAACKQHRASSSSCSCQSSQTSSTCSCQSSQTSSTCSCQSSGTSSTSCNWQSSRISSTC 63
Score = 30.0 bits (66), Expect = 3.9
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 8 GPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSC---STATTHVKCFLQSRSV 64
G S +CS +SS + S S++ ++ +++C S+ T+ C QS
Sbjct: 242 GTSSTSCSWQSSRTSSTCSCQSSRTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSCQSSRT 301
Query: 65 SDTC 68
S TC
Sbjct: 302 SSTC 305
>gi|209954795 zinc finger protein 761 [Homo sapiens]
Length = 746
Score = 30.4 bits (67), Expect = 3.0
Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 263 KTKYQHISCTCDRHVHT------CTDTKEGREYLGLA------HKDAMPFITSEVLPALN 310
KT Q S TC R +HT C + + + + H + P+ +E
Sbjct: 277 KTFSQTSSLTCHRRLHTGEKPYKCEECDKAFHFKSILERHRIIHTEEKPYKCNECGKTFR 336
Query: 311 S-SIIFALCFIQNHAYPFASGKQCGSNIGHSASVAFSNHLYTGAHPQRPGACLRT 364
SI+ + P+ +CG H +S+ + L+TG P + C +T
Sbjct: 337 QKSILTRHHRLHTGEKPYKCN-ECGKTFSHKSSLTCHHRLHTGEKPYKCNECGKT 390
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 30.4 bits (67), Expect = 3.0
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 283 TKEGREYLGLAHKDAMPFITSEVLPALNS-SIIFALCFIQNHAYPFASGKQCGSNIGHSA 341
TK + L L H P T+ +P L S S+ A C I +PF +I S
Sbjct: 516 TKPEQSLLSLQH----PPSTAPPVPLLRSHSMPSAACTISTPHHPFRGSYSFDDHITDSE 571
Query: 342 SVAFSNHLYTGAHPQ 356
+++ S+H++T +HP+
Sbjct: 572 ALSHSSHVFT-SHPR 585
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 30.4 bits (67), Expect = 3.0
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 283 TKEGREYLGLAHKDAMPFITSEVLPALNS-SIIFALCFIQNHAYPFASGKQCGSNIGHSA 341
TK + L L H P T+ +P L S S+ A C I +PF +I S
Sbjct: 516 TKPEQSLLSLQH----PPSTAPPVPLLRSHSMPSAACTISTPHHPFRGSYSFDDHITDSE 571
Query: 342 SVAFSNHLYTGAHPQ 356
+++ S+H++T +HP+
Sbjct: 572 ALSHSSHVFT-SHPR 585
>gi|221219015 olfactory receptor, family 52, subfamily L, member 1
[Homo sapiens]
Length = 329
Score = 30.0 bits (66), Expect = 3.9
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 82 HIDSLIQLILVQQFNEEIQGALMGTHLRIQVPICQHLHHLLSTQSSIHLCYG 133
+I LIQ+ + F+ G L+ L V IC LHH + C G
Sbjct: 112 YIVCLIQMFFIHAFSSMESGVLVAMALDCYVAICHPLHHSTILHPGVIGCIG 163
>gi|11034821 zinc finger protein 71 [Homo sapiens]
Length = 489
Score = 30.0 bits (66), Expect = 3.9
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 292 LAHKDAMPFITSEVLPALN-SSIIFALCFIQNHAYPFASGKQCGSNIGHSASVAFSNHLY 350
+ H P++ E A + S+ + I P+ G QCG + ++S+ ++
Sbjct: 402 IVHTGEKPYVCGECGKAFSQSAYLIEHQRIHTGEKPYRCG-QCGKSFIKNSSLTVHQRIH 460
Query: 351 TGAHPQRPGACLRT 364
TG P R G C +T
Sbjct: 461 TGEKPYRCGECGKT 474
>gi|118600981 jumonji domain containing 1C isoform a [Homo sapiens]
Length = 2540
Score = 30.0 bits (66), Expect = 3.9
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 319 FIQNHAYPF--ASGKQCGSNIGHSASVAFSNHLYTGAHPQRPGACLRTHPAAAG 370
F+ H +P +S + C + H ++ + HL G+ Q P + THP +G
Sbjct: 732 FLSQHPFPLHSSSHRTCLNPGTHHPALTPAPHLLAGSSSQTPLPTINTHPLTSG 785
>gi|68342036 jumonji domain containing 1C isoform b [Homo sapiens]
Length = 2303
Score = 30.0 bits (66), Expect = 3.9
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 319 FIQNHAYPF--ASGKQCGSNIGHSASVAFSNHLYTGAHPQRPGACLRTHPAAAG 370
F+ H +P +S + C + H ++ + HL G+ Q P + THP +G
Sbjct: 513 FLSQHPFPLHSSSHRTCLNPGTHHPALTPAPHLLAGSSSQTPLPTINTHPLTSG 566
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 29.6 bits (65), Expect = 5.1
Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 353 AHPQRPGACLRTHPAAAGRPLTRLYTCLLLCAMLLTRPLPPPP 395
AHP R GA HP A+ L A LL P PPPP
Sbjct: 324 AHPFRSGAPFSPHPHASRSTLA---------AQLLPLPQPPPP 357
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 29.6 bits (65), Expect = 5.1
Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 353 AHPQRPGACLRTHPAAAGRPLTRLYTCLLLCAMLLTRPLPPPP 395
AHP R GA HP A+ L A LL P PPPP
Sbjct: 324 AHPFRSGAPFSPHPHASRSTLA---------AQLLPLPQPPPP 357
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 29.6 bits (65), Expect = 5.1
Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 353 AHPQRPGACLRTHPAAAGRPLTRLYTCLLLCAMLLTRPLPPPP 395
AHP R GA HP A+ L A LL P PPPP
Sbjct: 324 AHPFRSGAPFSPHPHASRSTLA---------AQLLPLPQPPPP 357
>gi|38201677 teashirt family zinc finger 1 [Homo sapiens]
Length = 1032
Score = 29.6 bits (65), Expect = 5.1
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 7 PGPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSCST 50
P P+ PTC + S++ TS+PS S S + S ++ +TS S+
Sbjct: 111 PTPTPPTCPV----STTGPTTSTPSTSCSSSTSHSSTTSTSSSS 150
>gi|32261309 G protein-coupled receptor 135 [Homo sapiens]
Length = 494
Score = 29.6 bits (65), Expect = 5.1
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 5 EYPGPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATSCSTATT 53
E P P RP S+AL S A S+ G S A AA S ST T
Sbjct: 2 EEPQPPRPPASMALLGSQHSGAPSAAG-PPGGTSSAATAAVLSFSTVAT 49
>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
Length = 494
Score = 29.6 bits (65), Expect = 5.1
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 9 PSRPTCSLALKASSSRAATSSPSFSA--SGAMSWAAAAATSCSTA 51
P P+CS A SSS ++ SS S ++ SGA + A+AA + + A
Sbjct: 288 PPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAA 332
>gi|125490356 zinc finger protein 517 [Homo sapiens]
Length = 492
Score = 29.6 bits (65), Expect = 5.1
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 292 LAHKDAMPFITSEVLPALN-SSIIFALCFIQNHAYPFASGKQCGSNIGHSASVAFSNHLY 350
+ H A PF +E A SSI+ I PF G +CG S +A + ++
Sbjct: 197 IIHTGAKPFQCTECGKAFKQSSILLRHQLIHTEEKPFQCG-ECGKAFRQSTQLAAHHRVH 255
Query: 351 TGAHPQRPGAC 361
T P G C
Sbjct: 256 TRERPYACGEC 266
>gi|239753324 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 29.3 bits (64), Expect = 6.7
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 7 PGPSRPTCSLALKASSSRAATSSPSFSAS 35
P P RP+CS L A SS AT P+ S S
Sbjct: 66 PPPGRPSCSRPLCAGSSCLATPEPARSPS 94
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 29.3 bits (64), Expect = 6.7
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 9 PSRPTCSLALKASSS---RAATSSPSFSASGAMSWAAAAATSCSTATT 53
PS P S A S+S +++SS S SAS A + AAAAA + + A++
Sbjct: 105 PSMPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASS 152
Score = 29.3 bits (64), Expect = 6.7
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 8 GPSRPTCSLALKASSSRAATSSPSFSASGAMSWAAAAATS 47
G + P+ S + +SSS ++ S+ S SA+ A + AAAAA S
Sbjct: 112 GAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAAS 151
>gi|148233596 LPS-responsive vesicle trafficking, beach and anchor
containing [Homo sapiens]
Length = 2863
Score = 29.3 bits (64), Expect = 6.7
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 274 DRHVHTCTDTKEGREYLGLAHKDAMPFITSEVLPALNSSIIFALCFIQNHAYPFASGKQC 333
+RH +CT+T E + L SE+ PA S++ A + +S ++
Sbjct: 1557 ERHSQSCTETGSENENVSL----------SEITPAAFSTLTTASV---EESESTSSARRR 1603
Query: 334 GSNIGHSASVAFSNHLYTGAHPQRPG 359
S IG + +H+ H PG
Sbjct: 1604 DSGIGEETATGLGSHVEVTPHTAPPG 1629
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,488,046
Number of Sequences: 37866
Number of extensions: 829497
Number of successful extensions: 4379
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4305
Number of HSP's gapped (non-prelim): 93
length of query: 406
length of database: 18,247,518
effective HSP length: 105
effective length of query: 301
effective length of database: 14,271,588
effective search space: 4295747988
effective search space used: 4295747988
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.