Guide to the Human Genome
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Name: LOC100128471 Sequence: fasta or formatted (360aa) NCBI GI: 239752990
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {360aa} PREDICTED: hypothetical protein
alt prot {360aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         28           2
 C cysteine            1.1          4           1
 D aspartate           0.0          0           0
 E glutamate           1.9          7           1
 F phenylalanine      11.4         41           2
 G glycine             3.9         14           1
 H histidine           0.0          0           0
 I isoleucine          1.4          5           1
 K lysine              2.5          9           1
 L leucine            17.8         64           2
 M methionine          4.2         15           2
 N asparagine          1.1          4           1
 P proline             7.2         26           2
 Q glutamine           0.8          3           1
 R arginine            5.0         18           2
 S serine             20.8         75           4
 T threonine           4.4         16           2
 V valine              7.2         26           1
 W tryptophan          1.4          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128471          1.000   PREDICTED: hypothetical protein 
LOC100128471          0.998   PREDICTED: hypothetical protein 
MUC21                 0.012   mucin 21 
LOC100288635          0.012   PREDICTED: hypothetical protein 
LOC100288635          0.012   PREDICTED: hypothetical protein XP_002343184 
SLC43A2               0.011   solute carrier family 43, member 2 
STK36                 0.008   serine/threonine kinase 36 
MUC3B                 0.008   PREDICTED: mucin 3B, cell surface associated, parti...
MUC3A                 0.008   PREDICTED: mucin 3A, cell surface associated, parti...
LOC100130710          0.008   PREDICTED: hypothetical protein 
LOC100130710          0.008   PREDICTED: hypothetical protein 
GLS2                  0.008   glutaminase 2 
VKORC1                0.006   vitamin K epoxide reductase complex, subunit 1 isofo...
SLC14A2               0.006   solute carrier family 14 (urea transporter), member...
ATN1                  0.006   atrophin-1 
ATN1                  0.006   atrophin-1 
TNS3                  0.006   tensin 3 
MAGEC1                0.006   melanoma antigen family C, 1 
SIPA1L1               0.006   signal-induced proliferation-associated 1 like 1 [Hom...
ANKRD40               0.006   ankyrin repeat domain 40 
SV2A                  0.005   synaptic vesicle glycoprotein 2 
STRC                  0.005   stereocilin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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