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Search of human proteins with 239752561
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752561 PREDICTED: similar to Rho-associated, coiled-coil
containing protein kinase 1 [Homo sapiens]
(143 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4885583 Rho-associated, coiled-coil containing protein kinase... 309 6e-85
gi|239752561 PREDICTED: similar to Rho-associated, coiled-coil c... 309 6e-85
gi|239745983 PREDICTED: similar to Rho-associated, coiled-coil c... 255 8e-69
gi|41872583 Rho-associated, coiled-coil containing protein kinas... 197 3e-51
gi|47157325 protein kinase C, delta [Homo sapiens] 38 0.003
gi|31377782 protein kinase C, delta [Homo sapiens] 38 0.003
gi|194272142 myosin IXB isoform 2 [Homo sapiens] 37 0.004
gi|33356170 myosin IXB isoform 1 [Homo sapiens] 37 0.004
gi|156119615 myosin IXA [Homo sapiens] 37 0.007
gi|190684646 RAS guanyl releasing protein 1 isoform b [Homo sapi... 37 0.007
gi|190684644 RAS guanyl releasing protein 1 isoform a [Homo sapi... 37 0.007
gi|5453976 protein kinase C, theta [Homo sapiens] 36 0.013
gi|26051258 RAS guanyl releasing protein 4 isoform a [Homo sapiens] 34 0.048
gi|226246586 RAS guanyl releasing protein 4 isoform g [Homo sapi... 34 0.048
gi|226246584 RAS guanyl releasing protein 4 isoform f [Homo sapi... 34 0.048
gi|226246581 RAS guanyl releasing protein 4 isoform e [Homo sapi... 34 0.048
gi|226246579 RAS guanyl releasing protein 4 isoform d [Homo sapi... 34 0.048
gi|226246577 RAS guanyl releasing protein 4 isoform c [Homo sapi... 34 0.048
gi|226246575 RAS guanyl releasing protein 4 isoform b [Homo sapi... 34 0.048
gi|28557781 protein kinase C, eta [Homo sapiens] 33 0.062
gi|4885563 protein kinase C, epsilon [Homo sapiens] 33 0.11
gi|213385270 RAS guanyl releasing protein 3 (calcium and DAG-reg... 33 0.11
gi|24762239 RAS guanyl releasing protein 3 (calcium and DAG-regu... 33 0.11
gi|7662334 RAS guanyl releasing protein 3 (calcium and DAG-regul... 33 0.11
gi|120659787 protein kinase D2 isoform B [Homo sapiens] 32 0.14
gi|120659785 protein kinase D2 isoform A [Homo sapiens] 32 0.14
gi|120659782 protein kinase D2 isoform A [Homo sapiens] 32 0.14
gi|19923468 protein kinase D2 isoform A [Homo sapiens] 32 0.14
gi|4502193 v-raf murine sarcoma 3611 viral oncogene homolog [Hom... 31 0.31
gi|115529463 protein kinase D1 [Homo sapiens] 31 0.40
>gi|4885583 Rho-associated, coiled-coil containing protein kinase 1
[Homo sapiens]
Length = 1354
Score = 309 bits (791), Expect = 6e-85
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MEPVQQAEKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRD 60
MEPVQQAEKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRD
Sbjct: 1212 MEPVQQAEKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRD 1271
Query: 61 HLDKKEDLICPCKVSYDVTSARDMLLLACSQDEQKKWVTHLVKKIPKNPPSGFVRASPRT 120
HLDKKEDLICPCKVSYDVTSARDMLLLACSQDEQKKWVTHLVKKIPKNPPSGFVRASPRT
Sbjct: 1272 HLDKKEDLICPCKVSYDVTSARDMLLLACSQDEQKKWVTHLVKKIPKNPPSGFVRASPRT 1331
Query: 121 LSTRSTANQSFRKVVKNTSGKTS 143
LSTRSTANQSFRKVVKNTSGKTS
Sbjct: 1332 LSTRSTANQSFRKVVKNTSGKTS 1354
>gi|239752561 PREDICTED: similar to Rho-associated, coiled-coil
containing protein kinase 1 [Homo sapiens]
Length = 143
Score = 309 bits (791), Expect = 6e-85
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MEPVQQAEKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRD 60
MEPVQQAEKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRD
Sbjct: 1 MEPVQQAEKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRD 60
Query: 61 HLDKKEDLICPCKVSYDVTSARDMLLLACSQDEQKKWVTHLVKKIPKNPPSGFVRASPRT 120
HLDKKEDLICPCKVSYDVTSARDMLLLACSQDEQKKWVTHLVKKIPKNPPSGFVRASPRT
Sbjct: 61 HLDKKEDLICPCKVSYDVTSARDMLLLACSQDEQKKWVTHLVKKIPKNPPSGFVRASPRT 120
Query: 121 LSTRSTANQSFRKVVKNTSGKTS 143
LSTRSTANQSFRKVVKNTSGKTS
Sbjct: 121 LSTRSTANQSFRKVVKNTSGKTS 143
>gi|239745983 PREDICTED: similar to Rho-associated, coiled-coil
containing protein kinase 1 [Homo sapiens]
Length = 118
Score = 255 bits (652), Expect = 8e-69
Identities = 115/118 (97%), Positives = 117/118 (99%)
Query: 1 MEPVQQAEKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRD 60
MEPVQ+AEKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALEC+R HVKCHRD
Sbjct: 1 MEPVQEAEKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECQRRHVKCHRD 60
Query: 61 HLDKKEDLICPCKVSYDVTSARDMLLLACSQDEQKKWVTHLVKKIPKNPPSGFVRASP 118
HLDKKEDLICPCKVSYDVTSARDMLLLACSQDEQKKWVTHLVKKIPKNPPSGFVRASP
Sbjct: 61 HLDKKEDLICPCKVSYDVTSARDMLLLACSQDEQKKWVTHLVKKIPKNPPSGFVRASP 118
>gi|41872583 Rho-associated, coiled-coil containing protein kinase 2
[Homo sapiens]
Length = 1388
Score = 197 bits (500), Expect = 3e-51
Identities = 89/135 (65%), Positives = 112/135 (82%), Gaps = 5/135 (3%)
Query: 1 MEPVQQAEKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRD 60
+EPV EK+N+ HKGHEFIPTLYHFP NC+AC KPLWH+FKPPPALECRRCH+KCH+D
Sbjct: 1246 VEPV--GEKSNYICHKGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKD 1303
Query: 61 HLDKKEDLICPCKVSYDVTSARDMLLLACSQDEQKKWVTHLVKKIPKNPPS--GFVRASP 118
H+DKKE++I PCKV YD+++A+++LLLA S +EQ+KWV+ LVKKIPK PP+ F R+SP
Sbjct: 1304 HMDKKEEIIAPCKVYYDISTAKNLLLLANSTEEQQKWVSRLVKKIPKKPPAPDPFARSSP 1363
Query: 119 RTLSTRSTANQSFRK 133
RT S + NQS R+
Sbjct: 1364 RT-SMKIQQNQSIRR 1377
>gi|47157325 protein kinase C, delta [Homo sapiens]
Length = 676
Score = 38.1 bits (87), Expect = 0.003
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 16 KGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLDK 64
K HEFI T + P C C +W + K +CR+C+ H+ +DK
Sbjct: 157 KNHEFIATFFGQPTFCSVCKDFVWGLNK--QGYKCRQCNAAIHKKCIDK 203
Score = 31.2 bits (69), Expect = 0.31
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 8 EKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLDKKED 67
+K F H F Y P CD C LW + K L+C C + H +K +
Sbjct: 221 QKERFNIDMPHRFKVHNYMSPTFCDHCGSLLWGLVK--QGLKCEDCGMNVHHKCREKVAN 278
Query: 68 L 68
L
Sbjct: 279 L 279
>gi|31377782 protein kinase C, delta [Homo sapiens]
Length = 676
Score = 38.1 bits (87), Expect = 0.003
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 16 KGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLDK 64
K HEFI T + P C C +W + K +CR+C+ H+ +DK
Sbjct: 157 KNHEFIATFFGQPTFCSVCKDFVWGLNK--QGYKCRQCNAAIHKKCIDK 203
Score = 31.2 bits (69), Expect = 0.31
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 8 EKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLDKKED 67
+K F H F Y P CD C LW + K L+C C + H +K +
Sbjct: 221 QKERFNIDMPHRFKVHNYMSPTFCDHCGSLLWGLVK--QGLKCEDCGMNVHHKCREKVAN 278
Query: 68 L 68
L
Sbjct: 279 L 279
>gi|194272142 myosin IXB isoform 2 [Homo sapiens]
Length = 2022
Score = 37.4 bits (85), Expect = 0.004
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 2 EPVQQA--------EKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRC 53
EPV+Q+ ++ Q H GH F P +C+ C +W + K AL C C
Sbjct: 1609 EPVKQSKAQKKKRKQERAVQEHNGHVFASYQVSIPQSCEQCLSYIWLMDK---ALLCSVC 1665
Query: 54 HVKCHRDHLDK 64
+ CH+ + K
Sbjct: 1666 KMTCHKKCVHK 1676
>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
Length = 2157
Score = 37.4 bits (85), Expect = 0.004
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 2 EPVQQA--------EKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRC 53
EPV+Q+ ++ Q H GH F P +C+ C +W + K AL C C
Sbjct: 1609 EPVKQSKAQKKKRKQERAVQEHNGHVFASYQVSIPQSCEQCLSYIWLMDK---ALLCSVC 1665
Query: 54 HVKCHRDHLDK 64
+ CH+ + K
Sbjct: 1666 KMTCHKKCVHK 1676
>gi|156119615 myosin IXA [Homo sapiens]
Length = 2548
Score = 36.6 bits (83), Expect = 0.007
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 13 QNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHR 59
+ H GH F T Y P C+ C+ +W + + A C+ C CH+
Sbjct: 1995 EEHNGHIFKATQYSIPTYCEYCSSLIWIMDR---ASVCKLCKYACHK 2038
>gi|190684646 RAS guanyl releasing protein 1 isoform b [Homo
sapiens]
Length = 762
Score = 36.6 bits (83), Expect = 0.007
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLD 63
H F T Y P CD CA LW V K C+ C + CH+ D
Sbjct: 507 HNFQETTYLKPTFCDNCAGFLWGVIK--QGYRCKDCGMNCHKQCKD 550
>gi|190684644 RAS guanyl releasing protein 1 isoform a [Homo
sapiens]
Length = 797
Score = 36.6 bits (83), Expect = 0.007
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLD 63
H F T Y P CD CA LW V K C+ C + CH+ D
Sbjct: 542 HNFQETTYLKPTFCDNCAGFLWGVIK--QGYRCKDCGMNCHKQCKD 585
>gi|5453976 protein kinase C, theta [Homo sapiens]
Length = 706
Score = 35.8 bits (81), Expect = 0.013
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 16 KGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLDK 64
K HEF T + P C C + +W + K +CR+C+ H+ +DK
Sbjct: 158 KCHEFTATFFPQPTFCSVCHEFVWGLNKQ--GYQCRQCNAAIHKKCIDK 204
Score = 26.2 bits (56), Expect = 9.9
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 9 KTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCH 58
K F+ H F Y P C+ C LW + + L+C C + H
Sbjct: 223 KERFKIDMPHRFKVYNYKSPTFCEHCGTLLWGLAR--QGLKCDACGMNVH 270
>gi|26051258 RAS guanyl releasing protein 4 isoform a [Homo sapiens]
Length = 673
Score = 33.9 bits (76), Expect = 0.048
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLDK 64
H F + P CD+C+ LW V K CR C + CH+ D+
Sbjct: 541 HTFHEVTFRKPTFCDSCSGFLWGVTK--QGYRCRECGLCCHKHCRDQ 585
>gi|226246586 RAS guanyl releasing protein 4 isoform g [Homo
sapiens]
Length = 576
Score = 33.9 bits (76), Expect = 0.048
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLDK 64
H F + P CD+C+ LW V K CR C + CH+ D+
Sbjct: 444 HTFHEVTFRKPTFCDSCSGFLWGVTK--QGYRCRECGLCCHKHCRDQ 488
>gi|226246584 RAS guanyl releasing protein 4 isoform f [Homo
sapiens]
Length = 484
Score = 33.9 bits (76), Expect = 0.048
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLDK 64
H F + P CD+C+ LW V K CR C + CH+ D+
Sbjct: 352 HTFHEVTFRKPTFCDSCSGFLWGVTK--QGYRCRECGLCCHKHCRDQ 396
>gi|226246581 RAS guanyl releasing protein 4 isoform e [Homo
sapiens]
Length = 639
Score = 33.9 bits (76), Expect = 0.048
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLDK 64
H F + P CD+C+ LW V K CR C + CH+ D+
Sbjct: 507 HTFHEVTFRKPTFCDSCSGFLWGVTK--QGYRCRECGLCCHKHCRDQ 551
>gi|226246579 RAS guanyl releasing protein 4 isoform d [Homo
sapiens]
Length = 604
Score = 33.9 bits (76), Expect = 0.048
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLDK 64
H F + P CD+C+ LW V K CR C + CH+ D+
Sbjct: 472 HTFHEVTFRKPTFCDSCSGFLWGVTK--QGYRCRECGLCCHKHCRDQ 516
>gi|226246577 RAS guanyl releasing protein 4 isoform c [Homo
sapiens]
Length = 581
Score = 33.9 bits (76), Expect = 0.048
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLDK 64
H F + P CD+C+ LW V K CR C + CH+ D+
Sbjct: 449 HTFHEVTFRKPTFCDSCSGFLWGVTK--QGYRCRECGLCCHKHCRDQ 493
>gi|226246575 RAS guanyl releasing protein 4 isoform b [Homo
sapiens]
Length = 659
Score = 33.9 bits (76), Expect = 0.048
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLDK 64
H F + P CD+C+ LW V K CR C + CH+ D+
Sbjct: 527 HTFHEVTFRKPTFCDSCSGFLWGVTK--QGYRCRECGLCCHKHCRDQ 571
>gi|28557781 protein kinase C, eta [Homo sapiens]
Length = 683
Score = 33.5 bits (75), Expect = 0.062
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 5 QQAEKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRC----HVKCH 58
Q+A + GH+F+ T P C C + +W VF +C+ C H +CH
Sbjct: 159 QRAMRRRVHQINGHKFMATYLRQPTYCSHCREFIWGVF-GKQGYQCQVCTCVVHKRCH 215
Score = 30.4 bits (67), Expect = 0.53
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRC----HVKC 57
H+F Y P CD C LW + + L+C+ C H++C
Sbjct: 246 HKFSIHNYKVPTFCDHCGSLLWGIMR--QGLQCKICKMNVHIRC 287
>gi|4885563 protein kinase C, epsilon [Homo sapiens]
Length = 737
Score = 32.7 bits (73), Expect = 0.11
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 2 EPVQQAEKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHR 59
E Q F + H+F Y P CD C LW + + L+C+ C + HR
Sbjct: 227 ETPDQVGSQRFSVNMPHKFGIHNYKVPTFCDHCGSLLWGLLR--QGLQCKVCKMNVHR 282
Score = 29.3 bits (64), Expect = 1.2
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 5 QQAEKTNFQNHKGHEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRC----HVKCH 58
Q A + GH+F+ T P C C +W V +C+ C H +CH
Sbjct: 157 QGAVRRRVHQVNGHKFMATYLRQPTYCSHCRDFIWGVI-GKQGYQCQVCTCVVHKRCH 213
>gi|213385270 RAS guanyl releasing protein 3 (calcium and
DAG-regulated) isoform 1 [Homo sapiens]
Length = 690
Score = 32.7 bits (73), Expect = 0.11
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLDKKEDLICPCK 73
H F Y P C+ CA LW + K +C+ C CH+ K+ L+ C+
Sbjct: 495 HNFQEMTYLKPTFCEHCAGFLWGIIK--QGYKCKDCGANCHK---QCKDLLVLACR 545
>gi|24762239 RAS guanyl releasing protein 3 (calcium and
DAG-regulated) isoform 1 [Homo sapiens]
Length = 690
Score = 32.7 bits (73), Expect = 0.11
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLDKKEDLICPCK 73
H F Y P C+ CA LW + K +C+ C CH+ K+ L+ C+
Sbjct: 495 HNFQEMTYLKPTFCEHCAGFLWGIIK--QGYKCKDCGANCHK---QCKDLLVLACR 545
>gi|7662334 RAS guanyl releasing protein 3 (calcium and
DAG-regulated) isoform 2 [Homo sapiens]
Length = 689
Score = 32.7 bits (73), Expect = 0.11
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLDKKEDLICPCK 73
H F Y P C+ CA LW + K +C+ C CH+ K+ L+ C+
Sbjct: 494 HNFQEMTYLKPTFCEHCAGFLWGIIK--QGYKCKDCGANCHK---QCKDLLVLACR 544
>gi|120659787 protein kinase D2 isoform B [Homo sapiens]
Length = 721
Score = 32.3 bits (72), Expect = 0.14
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHR 59
H F+ Y P C AC K L +F+ L+C+ C CH+
Sbjct: 108 HTFLIHSYTRPTVCQACKKLLKGLFR--QGLQCKDCKFNCHK 147
>gi|120659785 protein kinase D2 isoform A [Homo sapiens]
Length = 878
Score = 32.3 bits (72), Expect = 0.14
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHR 59
H F+ Y P C AC K L +F+ L+C+ C CH+
Sbjct: 265 HTFLIHSYTRPTVCQACKKLLKGLFR--QGLQCKDCKFNCHK 304
>gi|120659782 protein kinase D2 isoform A [Homo sapiens]
Length = 878
Score = 32.3 bits (72), Expect = 0.14
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHR 59
H F+ Y P C AC K L +F+ L+C+ C CH+
Sbjct: 265 HTFLIHSYTRPTVCQACKKLLKGLFR--QGLQCKDCKFNCHK 304
>gi|19923468 protein kinase D2 isoform A [Homo sapiens]
Length = 878
Score = 32.3 bits (72), Expect = 0.14
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHR 59
H F+ Y P C AC K L +F+ L+C+ C CH+
Sbjct: 265 HTFLIHSYTRPTVCQACKKLLKGLFR--QGLQCKDCKFNCHK 304
>gi|4502193 v-raf murine sarcoma 3611 viral oncogene homolog [Homo
sapiens]
Length = 606
Score = 31.2 bits (69), Expect = 0.31
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHRDHLDKKEDLIC 70
H F+ + A CD C K L+H F+ C+ C K H+ H K +C
Sbjct: 99 HNFVRKTFFSLAFCDFCLKFLFHGFR------CQTCGYKFHQ-HCSSKVPTVC 144
>gi|115529463 protein kinase D1 [Homo sapiens]
Length = 912
Score = 30.8 bits (68), Expect = 0.40
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHR 59
H F+ Y P C C K L +F+ L+C+ C CH+
Sbjct: 271 HTFVIHSYTRPTVCQYCKKLLKGLFRQ--GLQCKDCRFNCHK 310
Score = 29.3 bits (64), Expect = 1.2
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 18 HEFIPTLYHFPANCDACAKPLWHVFKPPPALECRRCHVKCHR 59
H Y PA CD C + LW + + L+C C + H+
Sbjct: 147 HALFVHSYRAPAFCDHCGEMLWGLVR--QGLKCEGCGLNYHK 186
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.132 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,651,086
Number of Sequences: 37866
Number of extensions: 295442
Number of successful extensions: 726
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 71
length of query: 143
length of database: 18,247,518
effective HSP length: 92
effective length of query: 51
effective length of database: 14,763,846
effective search space: 752956146
effective search space used: 752956146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.