Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239752499
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752499 PREDICTED: similar to cell recognition molecule
Caspr2, partial [Homo sapiens]
(140 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752499 PREDICTED: similar to cell recognition molecule Cas... 276 4e-75
gi|239758135 PREDICTED: similar to cell recognition molecule CAS... 146 6e-36
gi|239743797 PREDICTED: similar to cell recognition molecule CAS... 146 6e-36
gi|169184330 PREDICTED: novel protein similar to contactin assoc... 146 6e-36
gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2... 146 6e-36
gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1... 146 6e-36
gi|47519929 cell recognition molecule CASPR3 [Homo sapiens] 144 2e-35
gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo sap... 107 2e-24
gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo sap... 107 2e-24
gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapi... 60 8e-10
gi|18640734 contactin associated protein-like 5 [Homo sapiens] 56 8e-09
gi|4505463 contactin associated protein 1 precursor [Homo sapiens] 33 0.058
gi|4827008 solute carrier family 15 (oligopeptide transporter), ... 29 1.1
gi|34304368 dystrobrevin binding protein 1 isoform b [Homo sapiens] 28 1.9
gi|226246529 myotubularin related protein 15 isoform b [Homo sap... 28 1.9
gi|226246527 myotubularin related protein 15 isoform b [Homo sap... 28 1.9
gi|226246525 myotubularin related protein 15 isoform b [Homo sap... 28 1.9
gi|226246523 myotubularin related protein 15 isoform a [Homo sap... 28 1.9
gi|41327708 crumbs homolog 1 precursor [Homo sapiens] 28 2.5
gi|222418585 zinc finger protein 814 [Homo sapiens] 27 4.2
gi|116534898 desmoglein 2 preproprotein [Homo sapiens] 27 5.5
gi|63025206 hypothetical protein LOC221061 [Homo sapiens] 27 5.5
gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo sap... 27 7.1
gi|54873624 eukaryotic translation initiation factor 2A [Homo sa... 26 9.3
>gi|239752499 PREDICTED: similar to cell recognition molecule
Caspr2, partial [Homo sapiens]
Length = 140
Score = 276 bits (706), Expect = 4e-75
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 LGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSG 60
LGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSG
Sbjct: 1 LGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSG 60
Query: 61 TEFNAVKSLILGKVLADTKFTDYVCINQHQLRRPSFNDKTTFELNTREKTGNLITADEYS 120
TEFNAVKSLILGKVLADTKFTDYVCINQHQLRRPSFNDKTTFELNTREKTGNLITADEYS
Sbjct: 61 TEFNAVKSLILGKVLADTKFTDYVCINQHQLRRPSFNDKTTFELNTREKTGNLITADEYS 120
Query: 121 FISLSSPALPVASILFDFSI 140
FISLSSPALPVASILFDFSI
Sbjct: 121 FISLSSPALPVASILFDFSI 140
>gi|239758135 PREDICTED: similar to cell recognition molecule CASPR3
[Homo sapiens]
Length = 140
Score = 146 bits (368), Expect = 6e-36
Identities = 74/74 (100%), Positives = 74/74 (100%)
Query: 2 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 61
GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT
Sbjct: 65 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 124
Query: 62 EFNAVKSLILGKVL 75
EFNAVKSLILGKVL
Sbjct: 125 EFNAVKSLILGKVL 138
>gi|239743797 PREDICTED: similar to cell recognition molecule CASPR3
[Homo sapiens]
Length = 944
Score = 146 bits (368), Expect = 6e-36
Identities = 74/74 (100%), Positives = 74/74 (100%)
Query: 2 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 61
GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT
Sbjct: 807 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 866
Query: 62 EFNAVKSLILGKVL 75
EFNAVKSLILGKVL
Sbjct: 867 EFNAVKSLILGKVL 880
>gi|169184330 PREDICTED: novel protein similar to contactin
associated protein-like 3 (CNTNAP3) [Homo sapiens]
Length = 291
Score = 146 bits (368), Expect = 6e-36
Identities = 74/74 (100%), Positives = 74/74 (100%)
Query: 2 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 61
GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT
Sbjct: 77 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 136
Query: 62 EFNAVKSLILGKVL 75
EFNAVKSLILGKVL
Sbjct: 137 EFNAVKSLILGKVL 150
>gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2
[Homo sapiens]
Length = 1207
Score = 146 bits (368), Expect = 6e-36
Identities = 74/74 (100%), Positives = 74/74 (100%)
Query: 2 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 61
GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT
Sbjct: 993 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 1052
Query: 62 EFNAVKSLILGKVL 75
EFNAVKSLILGKVL
Sbjct: 1053 EFNAVKSLILGKVL 1066
>gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1
[Homo sapiens]
Length = 1288
Score = 146 bits (368), Expect = 6e-36
Identities = 74/74 (100%), Positives = 74/74 (100%)
Query: 2 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 61
GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT
Sbjct: 1074 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 1133
Query: 62 EFNAVKSLILGKVL 75
EFNAVKSLILGKVL
Sbjct: 1134 EFNAVKSLILGKVL 1147
>gi|47519929 cell recognition molecule CASPR3 [Homo sapiens]
Length = 1288
Score = 144 bits (364), Expect = 2e-35
Identities = 73/74 (98%), Positives = 73/74 (98%)
Query: 2 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 61
GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQS KKQVILSSGT
Sbjct: 1074 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSTKKQVILSSGT 1133
Query: 62 EFNAVKSLILGKVL 75
EFNAVKSLILGKVL
Sbjct: 1134 EFNAVKSLILGKVL 1147
>gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo sapiens]
Length = 1235
Score = 107 bits (268), Expect = 2e-24
Identities = 49/74 (66%), Positives = 63/74 (85%)
Query: 2 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 61
GSLQIRYKL+++Q PD FDFKNMADGQLH + INREE VV +E++ + ++QV LSSGT
Sbjct: 1001 GSLQIRYKLNKYQEPDVVNFDFKNMADGQLHHIMINREEGVVFIEIDDNRRRQVHLSSGT 1060
Query: 62 EFNAVKSLILGKVL 75
EF+AVKSL+LG++L
Sbjct: 1061 EFSAVKSLVLGRIL 1074
>gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo sapiens]
Length = 1308
Score = 107 bits (268), Expect = 2e-24
Identities = 49/74 (66%), Positives = 63/74 (85%)
Query: 2 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 61
GSLQIRYKL+++Q PD FDFKNMADGQLH + INREE VV +E++ + ++QV LSSGT
Sbjct: 1074 GSLQIRYKLNKYQEPDVVNFDFKNMADGQLHHIMINREEGVVFIEIDDNRRRQVHLSSGT 1133
Query: 62 EFNAVKSLILGKVL 75
EF+AVKSL+LG++L
Sbjct: 1134 EFSAVKSLVLGRIL 1147
>gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapiens]
Length = 1331
Score = 59.7 bits (143), Expect = 8e-10
Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 2 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQ--SAKKQVILSS 59
GSLQIRY L + P D +NMA+GQ H V I R E + ++++ S + SS
Sbjct: 1083 GSLQIRYNLGGTREPYNIDVDHRNMANGQPHSVNITRHEKTIFLKLDHYPSVSYHLPSSS 1142
Query: 60 GTEFNAVKSLILGKVLADTKFTDYVCINQHQLRRPSF 96
T FN+ KSL LGKV+ K + H+ P F
Sbjct: 1143 DTLFNSPKSLFLGKVIETGKIDQEI----HKYNTPGF 1175
>gi|18640734 contactin associated protein-like 5 [Homo sapiens]
Length = 1306
Score = 56.2 bits (134), Expect = 8e-09
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 2 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 61
GSLQ+RY L++ + FT D N A+ ++H +KINRE + ++++Q + S
Sbjct: 1072 GSLQVRYHLNKEET-HVFTIDADNFANRRMHHLKINREGRELTIQMDQQLRLSYNFSPEV 1130
Query: 62 EFNAVKSLILGKV 74
EF ++SL LGKV
Sbjct: 1131 EFRVIRSLTLGKV 1143
>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
Length = 1384
Score = 33.5 bits (75), Expect = 0.058
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 2 GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINR--EEAVVMVEVNQSAKKQVILSS 59
G+LQ+RY+L +P + + + DGQ H + I R + V+ +++ L
Sbjct: 1116 GTLQLRYQLGT--SPYVYQLTTRPVTDGQPHSINITRVYRNLFIQVDYFPLTEQKFSLLV 1173
Query: 60 GTEFNAVKSLILGKVL 75
++ ++ K+L LG+V+
Sbjct: 1174 DSQLDSPKALYLGRVM 1189
>gi|4827008 solute carrier family 15 (oligopeptide transporter),
member 1 [Homo sapiens]
Length = 708
Score = 29.3 bits (64), Expect = 1.1
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 26/128 (20%)
Query: 36 INREEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKVLADTKFTDYVCINQHQLRR-- 93
+N V+MV + + +I G F ++K + +G VLA F I Q ++ +
Sbjct: 328 VNAILIVIMVPIFDAVLYPLIAKCGFNFTSLKKMAVGMVLASMAFV-VAAIVQVEIDKTL 386
Query: 94 ---PSFNDKTTFELNTREKT------GNLIT--------------ADEYSFISLSSPALP 130
P N+ LN T G ++T ++ + I++SSP P
Sbjct: 387 PVFPKGNEVQIKVLNIGNNTMNISLPGEMVTLGPMSQTNAFMTFDVNKLTRINISSPGSP 446
Query: 131 VASILFDF 138
V ++ DF
Sbjct: 447 VTAVTDDF 454
>gi|34304368 dystrobrevin binding protein 1 isoform b [Homo sapiens]
Length = 303
Score = 28.5 bits (62), Expect = 1.9
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 33 QVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKV--LADTKFTDYVCINQHQ 90
+V ++ E + +++++ V L+SG E N V S LG+V LA + Y C + +
Sbjct: 232 EVNVDMLEQMDLMDISDQEALDVFLNSGGEENTVLSPALGRVDKLALAEPGQYRCHSPPK 291
Query: 91 LRR 93
+RR
Sbjct: 292 VRR 294
>gi|226246529 myotubularin related protein 15 isoform b [Homo
sapiens]
Length = 533
Score = 28.5 bits (62), Expect = 1.9
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 7 RYKLDRHQNPDAFTFDFKNMADGQLHQVKINRE----EAVVMVEVN--QSAKKQVILSSG 60
RY L+RH + DF + GQ+ + N +V + +V +S + L+ G
Sbjct: 53 RYDLNRHLDEMCANNDFVQVDPGQVGLINSNVSMVDLTSVTLEDVTPKKSPPPKTNLTPG 112
Query: 61 TEFNAVKSLILGKVLADTKFTDYVCINQHQLRRPS 95
+ ++ K + K+ K D VC NQ +LR S
Sbjct: 113 -QSDSAKREVKQKISPYFKSNDVVCKNQDELRNRS 146
>gi|226246527 myotubularin related protein 15 isoform b [Homo
sapiens]
Length = 533
Score = 28.5 bits (62), Expect = 1.9
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 7 RYKLDRHQNPDAFTFDFKNMADGQLHQVKINRE----EAVVMVEVN--QSAKKQVILSSG 60
RY L+RH + DF + GQ+ + N +V + +V +S + L+ G
Sbjct: 53 RYDLNRHLDEMCANNDFVQVDPGQVGLINSNVSMVDLTSVTLEDVTPKKSPPPKTNLTPG 112
Query: 61 TEFNAVKSLILGKVLADTKFTDYVCINQHQLRRPS 95
+ ++ K + K+ K D VC NQ +LR S
Sbjct: 113 -QSDSAKREVKQKISPYFKSNDVVCKNQDELRNRS 146
>gi|226246525 myotubularin related protein 15 isoform b [Homo
sapiens]
Length = 533
Score = 28.5 bits (62), Expect = 1.9
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 7 RYKLDRHQNPDAFTFDFKNMADGQLHQVKINRE----EAVVMVEVN--QSAKKQVILSSG 60
RY L+RH + DF + GQ+ + N +V + +V +S + L+ G
Sbjct: 53 RYDLNRHLDEMCANNDFVQVDPGQVGLINSNVSMVDLTSVTLEDVTPKKSPPPKTNLTPG 112
Query: 61 TEFNAVKSLILGKVLADTKFTDYVCINQHQLRRPS 95
+ ++ K + K+ K D VC NQ +LR S
Sbjct: 113 -QSDSAKREVKQKISPYFKSNDVVCKNQDELRNRS 146
>gi|226246523 myotubularin related protein 15 isoform a [Homo
sapiens]
Length = 1017
Score = 28.5 bits (62), Expect = 1.9
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 7 RYKLDRHQNPDAFTFDFKNMADGQLHQVKINRE----EAVVMVEVN--QSAKKQVILSSG 60
RY L+RH + DF + GQ+ + N +V + +V +S + L+ G
Sbjct: 53 RYDLNRHLDEMCANNDFVQVDPGQVGLINSNVSMVDLTSVTLEDVTPKKSPPPKTNLTPG 112
Query: 61 TEFNAVKSLILGKVLADTKFTDYVCINQHQLRRPS 95
+ ++ K + K+ K D VC NQ +LR S
Sbjct: 113 -QSDSAKREVKQKISPYFKSNDVVCKNQDELRNRS 146
>gi|41327708 crumbs homolog 1 precursor [Homo sapiens]
Length = 1406
Score = 28.1 bits (61), Expect = 2.5
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 25 NMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSL 69
N +DG+ H V++ EAV + ++ S K++ I + T + +S+
Sbjct: 561 NTSDGEWHFVEVIFAEAVTLTLIDDSCKEKCIAKAPTPLESDQSI 605
>gi|222418585 zinc finger protein 814 [Homo sapiens]
Length = 855
Score = 27.3 bits (59), Expect = 4.2
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 32 HQVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKVLADTKFTDYVCINQHQ 90
HQ + REE V E +S K LS+ + K G+ F+ YV + HQ
Sbjct: 232 HQRLLTREECYVCCECGKSFSKYASLSNHQRVHTEKKHECGE--CGKSFSKYVSFSNHQ 288
>gi|116534898 desmoglein 2 preproprotein [Homo sapiens]
Length = 1118
Score = 26.9 bits (58), Expect = 5.5
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 10 LDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKK------QVILSSGTEF 63
LD H N F+F + G + KI R+E+ V + QS KK Q ++S F
Sbjct: 520 LDGHPNSGPFSFSVIDKPPGMAEKWKIARQES-TSVLLQQSEKKLGRSEIQFLISDNQGF 578
Query: 64 NAVKSLIL 71
+ + +L
Sbjct: 579 SCPEKQVL 586
>gi|63025206 hypothetical protein LOC221061 [Homo sapiens]
Length = 890
Score = 26.9 bits (58), Expect = 5.5
Identities = 15/65 (23%), Positives = 27/65 (41%)
Query: 38 REEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKVLADTKFTDYVCINQHQLRRPSFN 97
R + + ++ L SG + N KS G+ A + +Y + +HQ + P
Sbjct: 721 RHSYIDLQRAGRNGSNDASLDSGVDMNEPKSARKGRGDALSLQQNYPPVQEHQQKEPRAP 780
Query: 98 DKTTF 102
D T +
Sbjct: 781 DSTAY 785
>gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo
sapiens]
Length = 558
Score = 26.6 bits (57), Expect = 7.1
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 14 QNPDAFT-FDFKNMADGQLHQVKIN-REEAVVMVEVN 48
+NPDA + FD K+ AD ++ + ++N R E V+ N
Sbjct: 242 ENPDADSDFDAKSSADDEIEETRVNCRREKVIETPEN 278
>gi|54873624 eukaryotic translation initiation factor 2A [Homo
sapiens]
Length = 585
Score = 26.2 bits (56), Expect = 9.3
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 31 LHQVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGK 73
LH + N E AVV + N V SS TEF AV + K
Sbjct: 256 LHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAK 298
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,427,473
Number of Sequences: 37866
Number of extensions: 152318
Number of successful extensions: 365
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 24
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.