Guide to the Human Genome
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Name: LOC392435 Sequence: fasta or formatted (334aa) NCBI GI: 239752285
Description:

PREDICTED: similar to hCG1811022

Not currently referenced in the text

Other entries for this name:
alt mRNA {334aa} PREDICTED: similar to hCG1811022
alt mRNA {334aa} PREDICTED: similar to hCG1811022
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         31           3
 C cysteine            1.2          4           1
 D aspartate           3.6         12           2
 E glutamate           7.2         24           3
 F phenylalanine       3.9         13           1
 G glycine             4.2         14           1
 H histidine           3.6         12           2
 I isoleucine          3.9         13           2
 K lysine              4.2         14           2
 L leucine             7.2         24           2
 M methionine          2.4          8           1
 N asparagine          4.2         14           2
 P proline             6.0         20           2
 Q glutamine           4.2         14           2
 R arginine            9.3         31           2
 S serine              8.1         27           5
 T threonine           8.1         27           4
 V valine              6.0         20           1
 W tryptophan          0.9          3           1
 Y tyrosine            2.7          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1811022 
LOC392435             1.000   PREDICTED: similar to hCG1811022 
LOC392435             1.000   PREDICTED: similar to hCG1811022 
MAGEB10               0.460   melanoma antigen family B, 10 
MAGEB1                0.406   melanoma antigen family B, 1 
MAGEB1                0.406   melanoma antigen family B, 1 
MAGEB1                0.406   melanoma antigen family B, 1 
MAGEB18               0.401   melanoma antigen family B, 18 
MAGEB4                0.383   melanoma antigen family B, 4 
MAGEB3                0.346   melanoma antigen family B, 3 
MAGEB17               0.335   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.335   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.335   PREDICTED: melanoma antigen family B, 17 
MAGEA10               0.333   melanoma antigen family A, 10 
MAGEA10               0.333   melanoma antigen family A, 10 
MAGEB2                0.310   melanoma antigen family B, 2 
MAGEB16               0.302   melanoma antigen family B, 16 
MAGEA11               0.279   melanoma antigen family A, 11 isoform b 
MAGEA11               0.279   melanoma antigen family A, 11 isoform a 
MAGEA4                0.264   melanoma antigen family A, 4 
MAGEA4                0.264   melanoma antigen family A, 4 
MAGEA4                0.264   melanoma antigen family A, 4 
MAGEA4                0.264   melanoma antigen family A, 4 
LOC392555             0.258   PREDICTED: similar to melanoma antigen family C, 2 ...
LOC392555             0.258   PREDICTED: similar to melanoma antigen family C, 2 ...
LOC392555             0.258   PREDICTED: similar to melanoma antigen family C, 2 ...
LOC100292575          0.256   PREDICTED: similar to melanoma antigen family C, 2 ...
MAGEA8                0.253   melanoma antigen family A, 8 
MAGEB5                0.252   PREDICTED: melanoma antigen family B, 5 
MAGEB5                0.252   PREDICTED: melanoma antigen family B, 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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