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Search of human proteins with 239752047
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752047 PREDICTED: hypothetical protein XP_002348075 [Homo
sapiens]
(126 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752047 PREDICTED: hypothetical protein XP_002348075 [Homo ... 269 5e-73
gi|167614485 acetyl-coenzyme A acyltransferase 2 [Homo sapiens] 27 3.2
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 27 4.1
gi|239753698 PREDICTED: hypothetical protein [Homo sapiens] 27 4.1
gi|239748278 PREDICTED: hypothetical protein [Homo sapiens] 27 4.1
gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo ... 27 4.1
gi|239753399 PREDICTED: hypothetical protein [Homo sapiens] 27 5.4
gi|239741865 PREDICTED: hypothetical protein XP_002342328 [Homo ... 27 5.4
gi|57546899 myeloid/lymphoid or mixed-lineage leukemia transloca... 27 5.4
gi|4757726 myeloid/lymphoid or mixed-lineage leukemia translocat... 27 5.4
gi|41327683 cortistatin preproprotein [Homo sapiens] 27 5.4
gi|4502889 ceroid-lipofuscinosis, neuronal 3 [Homo sapiens] 26 7.0
gi|109698601 ceroid-lipofuscinosis, neuronal 3 [Homo sapiens] 26 7.0
gi|148539872 acetyl-Coenzyme A acetyltransferase 2 [Homo sapiens] 26 7.0
gi|239758164 PREDICTED: similar to protein phosphatase 2A 48 kDa... 26 9.2
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 26 9.2
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 26 9.2
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 26 9.2
gi|13129000 meteorin, glial cell differentiation regulator [Homo... 26 9.2
>gi|239752047 PREDICTED: hypothetical protein XP_002348075 [Homo
sapiens]
Length = 126
Score = 269 bits (687), Expect = 5e-73
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MAALCRLCRHMIADCHCWGEEGGPLSTRQIPTPNIETEKSQAGKHKLSPVWRLRGLAPRY 60
MAALCRLCRHMIADCHCWGEEGGPLSTRQIPTPNIETEKSQAGKHKLSPVWRLRGLAPRY
Sbjct: 1 MAALCRLCRHMIADCHCWGEEGGPLSTRQIPTPNIETEKSQAGKHKLSPVWRLRGLAPRY 60
Query: 61 ARFTLALRPSMMGFGSLQALSAAARSAMVTWWSRDTSGAAVGGTRGERGRRLRPGTGCCH 120
ARFTLALRPSMMGFGSLQALSAAARSAMVTWWSRDTSGAAVGGTRGERGRRLRPGTGCCH
Sbjct: 61 ARFTLALRPSMMGFGSLQALSAAARSAMVTWWSRDTSGAAVGGTRGERGRRLRPGTGCCH 120
Query: 121 PSLPFL 126
PSLPFL
Sbjct: 121 PSLPFL 126
>gi|167614485 acetyl-coenzyme A acyltransferase 2 [Homo sapiens]
Length = 397
Score = 27.3 bits (59), Expect = 3.2
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 44 KHKLSPVWRLRGLAPRYARFTLALRPSMMGFGSLQALSAAARSA 87
KH +P+ R+ G F PS+MG G + A+S A + A
Sbjct: 270 KHNFTPLARIVGY------FVSGCDPSIMGIGPVPAISGALKKA 307
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 26.9 bits (58), Expect = 4.1
Identities = 27/91 (29%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 24 PLSTRQIPTPNIETEKSQAGKHKLSPVWRLRGLAPRYARFTLALRPSMMGFGSLQALSAA 83
P +P P + + LS WR PR R L PS+ + Q A
Sbjct: 4 PPRLSHVPPPLFPSAPATLASRSLSH-WR-----PRPPRQLAPLLPSLAPSSARQGARRA 57
Query: 84 ARSAMVTWWSRDTSGAAVGGTRGERGRRLRP 114
R SR GAA+ G GRR RP
Sbjct: 58 QRHVTAQQPSRLAGGAAIKG-----GRRRRP 83
>gi|239753698 PREDICTED: hypothetical protein [Homo sapiens]
Length = 416
Score = 26.9 bits (58), Expect = 4.1
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 78 QALSAAARSAMVTWWSRD----------TSGAAVGGTRGERGRRLRPGTGCCHPSLP 124
+AL AAA TW S++ T+GA G RGRR G PS+P
Sbjct: 132 RALPAAAGRKTKTWQSQNQSPRSARAPHTAGAGPGPGPEPRGRRSHSPLGFFSPSVP 188
>gi|239748278 PREDICTED: hypothetical protein [Homo sapiens]
Length = 416
Score = 26.9 bits (58), Expect = 4.1
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 78 QALSAAARSAMVTWWSRD----------TSGAAVGGTRGERGRRLRPGTGCCHPSLP 124
+AL AAA TW S++ T+GA G RGRR G PS+P
Sbjct: 132 RALPAAAGRKTKTWQSQNQSPRSARAPHTAGAGPGPGPEPRGRRSHSPLGFFSPSVP 188
>gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo
sapiens]
Length = 329
Score = 26.9 bits (58), Expect = 4.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 68 RPSMMGFGSLQALSAAARSAMVTWWSRDTSGAAVGGTRGERGRRLRP 114
RP +G ++ + + A A WS+ GA +G E GR +P
Sbjct: 282 RPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQEPGRDQKP 328
>gi|239753399 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 26.6 bits (57), Expect = 5.4
Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 66 ALRPSMMGFGSLQALSAAARSAMVTWWSRDTSGAAVGGTR--GERGR--RLRPGTGCCHP 121
A R G G A +A R T +RD G GG R G RGR R RP
Sbjct: 78 APRKPRTGRGGAAATAAVTRKERETAPARDRGGGDGGGARADGLRGRSPRRRPAGRAHAR 137
Query: 122 SLP 124
SLP
Sbjct: 138 SLP 140
>gi|239741865 PREDICTED: hypothetical protein XP_002342328 [Homo
sapiens]
Length = 165
Score = 26.6 bits (57), Expect = 5.4
Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 66 ALRPSMMGFGSLQALSAAARSAMVTWWSRDTSGAAVGGTR--GERGR--RLRPGTGCCHP 121
A R G G A +A R T +RD G GG R G RGR R RP
Sbjct: 78 APRKPRTGRGGAAATAAVTRKERETAPARDRGGGDGGGARADGLRGRSPRRRPAGRAHAR 137
Query: 122 SLP 124
SLP
Sbjct: 138 SLP 140
>gi|57546899 myeloid/lymphoid or mixed-lineage leukemia translocated
to, 10 isoform b [Homo sapiens]
Length = 1011
Score = 26.6 bits (57), Expect = 5.4
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 30 IPTPNIETEKSQAGKHKLSPVWRLRGLAPRYARFTLALRPSMMGFGSLQALSAAARSAMV 89
+P+ + TEK+ S L+ L ARFT A F + A +++ +
Sbjct: 256 VPSLTVTTEKTYTSTSNNSISGSLKRLEDTTARFTNA------NFQEVSAHTSSGKDVSE 309
Query: 90 TWWSRDTSGAAVGGTRGERGRRLRPGTG 117
T S + + G+RGR +PG G
Sbjct: 310 TRGSEGKGKKSSAHSSGQRGR--KPGGG 335
>gi|4757726 myeloid/lymphoid or mixed-lineage leukemia translocated
to, 10 isoform a [Homo sapiens]
Length = 1027
Score = 26.6 bits (57), Expect = 5.4
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 30 IPTPNIETEKSQAGKHKLSPVWRLRGLAPRYARFTLALRPSMMGFGSLQALSAAARSAMV 89
+P+ + TEK+ S L+ L ARFT A F + A +++ +
Sbjct: 256 VPSLTVTTEKTYTSTSNNSISGSLKRLEDTTARFTNA------NFQEVSAHTSSGKDVSE 309
Query: 90 TWWSRDTSGAAVGGTRGERGRRLRPGTG 117
T S + + G+RGR +PG G
Sbjct: 310 TRGSEGKGKKSSAHSSGQRGR--KPGGG 335
>gi|41327683 cortistatin preproprotein [Homo sapiens]
Length = 155
Score = 26.6 bits (57), Expect = 5.4
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 38 EKSQ-AGKHKLSPVWRLRGLAPRYARFTLALRPSMMGFGS--LQALSAAARSAMVT---W 91
EK Q A K LSP L L+ A L L G S +Q + +S+++T W
Sbjct: 43 EKLQSAHKMPLSPGLLLLLLSGATATAALPLEGGPTGRDSEHMQEAAGIRKSSLLTFLAW 102
Query: 92 WSRDTSGAAVGGTRGERGRRL 112
W TS A+ G GE R +
Sbjct: 103 WFEWTSQASAGPLIGEEAREV 123
>gi|4502889 ceroid-lipofuscinosis, neuronal 3 [Homo sapiens]
Length = 438
Score = 26.2 bits (56), Expect = 7.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 73 GFGSLQALSAAA--RSAMVTWWSRDTSGAAVGG 103
G G + LS A A+++WWS T GA + G
Sbjct: 163 GLGEVTFLSLTAFYPRAVISWWSSGTGGAGLLG 195
>gi|109698601 ceroid-lipofuscinosis, neuronal 3 [Homo sapiens]
Length = 438
Score = 26.2 bits (56), Expect = 7.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 73 GFGSLQALSAAA--RSAMVTWWSRDTSGAAVGG 103
G G + LS A A+++WWS T GA + G
Sbjct: 163 GLGEVTFLSLTAFYPRAVISWWSSGTGGAGLLG 195
>gi|148539872 acetyl-Coenzyme A acetyltransferase 2 [Homo sapiens]
Length = 397
Score = 26.2 bits (56), Expect = 7.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 38 EKSQAGKHKLSPVWRLRGLAPRYARFTLALRPSMMGFGSLQALSAAARSA 87
+KS+A K L+P+ R+ + + + PS+MG G + A+ A A
Sbjct: 265 KKSEADKRGLTPLARIVSWSQ------VGVEPSIMGIGPIPAIKQAVTKA 308
>gi|239758164 PREDICTED: similar to protein phosphatase 2A 48 kDa
regulatory subunit [Homo sapiens]
Length = 290
Score = 25.8 bits (55), Expect = 9.2
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 89 VTWWSRDTSGAAVGGTRGERGRRLRPGTGCCH--PSLP 124
V++ SR + G VG RG + R RPG C PSLP
Sbjct: 48 VSFCSRGSLGG-VGQARGTQQERRRPGPADCPLLPSLP 84
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 25.8 bits (55), Expect = 9.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 23 GPLSTRQIPTPNIETEKSQAGKHKLSPVWRLRGLAPRYAR 62
G +S Q+P P K GK + P+WR+RG AR
Sbjct: 120 GTISPPQLPAPR---PKRFGGKQR--PLWRIRGWETTVAR 154
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 25.8 bits (55), Expect = 9.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 23 GPLSTRQIPTPNIETEKSQAGKHKLSPVWRLRGLAPRYAR 62
G +S Q+P P K GK + P+WR+RG AR
Sbjct: 120 GTISPPQLPAPR---PKRFGGKQR--PLWRIRGWETTVAR 154
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 25.8 bits (55), Expect = 9.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 23 GPLSTRQIPTPNIETEKSQAGKHKLSPVWRLRGLAPRYAR 62
G +S Q+P P K GK + P+WR+RG AR
Sbjct: 120 GTISPPQLPAPR---PKRFGGKQR--PLWRIRGWETTVAR 154
>gi|13129000 meteorin, glial cell differentiation regulator [Homo
sapiens]
Length = 293
Score = 25.8 bits (55), Expect = 9.2
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 75 GSLQALSAAARSAMVTWWSRDTSGAAVGGTRGERGRRLRPGTGCCHPSLPF 125
GS+ L+ A V W A+ T G R RPG C P PF
Sbjct: 42 GSVGQLALACAEGAVEWLY---PAGALRLTLGGPDPRARPGIACLRPVRPF 89
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.135 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,369,594
Number of Sequences: 37866
Number of extensions: 217368
Number of successful extensions: 1029
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1022
Number of HSP's gapped (non-prelim): 22
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.