Guide to the Human Genome
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Name: LOC100291105 Sequence: fasta or formatted (126aa) NCBI GI: 239752047
Description:

PREDICTED: hypothetical protein XP_002348075

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         14           3
 C cysteine            4.8          6           2
 D aspartate           1.6          2           1
 E glutamate           4.0          5           2
 F phenylalanine       2.4          3           1
 G glycine            11.1         14           2
 H histidine           3.2          4           1
 I isoleucine          2.4          3           1
 K lysine              2.4          3           1
 L leucine            10.3         13           1
 M methionine          4.0          5           2
 N asparagine          0.8          1           1
 P proline             7.1          9           1
 Q glutamine           2.4          3           1
 R arginine           11.9         15           2
 S serine              7.9         10           1
 T threonine           6.3          8           1
 V valine              2.4          3           1
 W tryptophan          3.2          4           2
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348075 
ACAA2                 0.008   acetyl-coenzyme A acyltransferase 2 
HNRPDL                0.008   heterogeneous nuclear ribonucleoprotein D-like [Homo...
LOC100292133          0.008   PREDICTED: hypothetical protein 
LOC100294354          0.008   PREDICTED: hypothetical protein 
LOC100287297          0.008   PREDICTED: hypothetical protein XP_002342926 
LOC100292853          0.008   PREDICTED: hypothetical protein 
LOC100288412          0.008   PREDICTED: hypothetical protein XP_002342328 
MLLT10                0.008   myeloid/lymphoid or mixed-lineage leukemia transloca...
MLLT10                0.008   myeloid/lymphoid or mixed-lineage leukemia translocat...
CORT                  0.008   cortistatin preproprotein 
CLN3                  0.004   ceroid-lipofuscinosis, neuronal 3 
CLN3                  0.004   ceroid-lipofuscinosis, neuronal 3 
ACAT2                 0.004   acetyl-Coenzyme A acetyltransferase 2 
LOC100292931          0.004   PREDICTED: similar to protein phosphatase 2A 48 kDa...
LOC100129571          0.004   PREDICTED: similar to hCG1646049 
LOC100129571          0.004   PREDICTED: similar to hCG1646049 
LOC100129571          0.004   PREDICTED: similar to hCG1646049 
METRN                 0.004   meteorin, glial cell differentiation regulator [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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