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Search of human proteins with 118572596
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|118572596 peripherin 2 [Homo sapiens]
(346 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|118572596 peripherin 2 [Homo sapiens] 714 0.0
gi|4506575 retinal outer segment membrane protein 1 [Homo sapiens] 233 1e-61
gi|6912530 transmembrane 4 superfamily member 15 [Homo sapiens] 55 9e-08
gi|4507541 transmembrane 4 superfamily member 6 [Homo sapiens] 53 4e-07
gi|122937466 tetraspanin 11 [Homo sapiens] 49 7e-06
gi|87159824 CD151 antigen [Homo sapiens] 48 1e-05
gi|87159822 CD151 antigen [Homo sapiens] 48 1e-05
gi|21237751 CD151 antigen [Homo sapiens] 48 1e-05
gi|21237748 CD151 antigen [Homo sapiens] 48 1e-05
gi|190194420 tetraspanin 14 isoform 1 [Homo sapiens] 47 3e-05
gi|38787991 transmembrane 4 superfamily member 8 isoform 2 [Homo... 44 2e-04
gi|5032201 transmembrane 4 superfamily member 8 isoform 1 [Homo ... 44 2e-04
gi|30425534 tetraspanin 33 [Homo sapiens] 43 5e-04
gi|21265104 tetraspanin 7 [Homo sapiens] 42 8e-04
gi|68800032 tetraspanin 4 isoform b [Homo sapiens] 42 8e-04
gi|68800005 tetraspanin 4 isoform a [Homo sapiens] 42 8e-04
gi|4507543 tetraspanin 4 isoform a [Homo sapiens] 42 8e-04
gi|68800018 tetraspanin 4 isoform a [Homo sapiens] 42 8e-04
gi|68800024 tetraspanin 4 isoform a [Homo sapiens] 42 8e-04
gi|68800011 tetraspanin 4 isoform a [Homo sapiens] 42 8e-04
gi|68799997 tetraspanin 4 isoform a [Homo sapiens] 42 8e-04
gi|5729941 tetraspanin 9 [Homo sapiens] 40 0.002
gi|190341022 tetraspanin 14 isoform 2 [Homo sapiens] 38 0.015
gi|4502693 CD9 antigen [Homo sapiens] 37 0.026
gi|50511934 transmembrane 4 superfamily member 17 isoform b [Hom... 37 0.026
gi|54859560 transmembrane 4 superfamily member 17 isoform a [Hom... 37 0.026
gi|54859505 transmembrane 4 superfamily member 17 isoform c [Hom... 37 0.026
gi|4504813 CD82 antigen isoform 1 [Homo sapiens] 36 0.058
gi|21264583 transmembrane 4 superfamily member 9 [Homo sapiens] 36 0.058
gi|10834972 CD53 antigen [Homo sapiens] 34 0.17
>gi|118572596 peripherin 2 [Homo sapiens]
Length = 346
Score = 714 bits (1843), Expect = 0.0
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MALLKVKFDQKKRVKLAQGLWLMNWFSVLAGIIIFSLGLFLKIELRKRSDVMNNSESHFV 60
MALLKVKFDQKKRVKLAQGLWLMNWFSVLAGIIIFSLGLFLKIELRKRSDVMNNSESHFV
Sbjct: 1 MALLKVKFDQKKRVKLAQGLWLMNWFSVLAGIIIFSLGLFLKIELRKRSDVMNNSESHFV 60
Query: 61 PNSLIGMGVLSCVFNSLAGKICYDALDPAKYARWKPWLKPYLAICVLFNIILFLVALCCF 120
PNSLIGMGVLSCVFNSLAGKICYDALDPAKYARWKPWLKPYLAICVLFNIILFLVALCCF
Sbjct: 61 PNSLIGMGVLSCVFNSLAGKICYDALDPAKYARWKPWLKPYLAICVLFNIILFLVALCCF 120
Query: 121 LLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEIQWI 180
LLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEIQWI
Sbjct: 121 LLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEIQWI 180
Query: 181 SNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNPSSPRPCIQYQITNNSAHYSYDHQT 240
SNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNPSSPRPCIQYQITNNSAHYSYDHQT
Sbjct: 181 SNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNPSSPRPCIQYQITNNSAHYSYDHQT 240
Query: 241 EELNLWVRGCRAALLSYYSSLMNSMGVVTLLIWLFEVTITIGLRYLQTSLDGVSNPEESE 300
EELNLWVRGCRAALLSYYSSLMNSMGVVTLLIWLFEVTITIGLRYLQTSLDGVSNPEESE
Sbjct: 241 EELNLWVRGCRAALLSYYSSLMNSMGVVTLLIWLFEVTITIGLRYLQTSLDGVSNPEESE 300
Query: 301 SESQGWLLERSVPETWKAFLESVKKLGKGNQVEAEGADAGQAPEAG 346
SESQGWLLERSVPETWKAFLESVKKLGKGNQVEAEGADAGQAPEAG
Sbjct: 301 SESQGWLLERSVPETWKAFLESVKKLGKGNQVEAEGADAGQAPEAG 346
>gi|4506575 retinal outer segment membrane protein 1 [Homo sapiens]
Length = 351
Score = 233 bits (595), Expect = 1e-61
Identities = 123/334 (36%), Positives = 193/334 (57%), Gaps = 7/334 (2%)
Query: 13 RVKLAQGLWLMNWFSVLAGIIIFSLGLFLKIELRKRSDVMNNS-ESHFVPNSLIGMGVLS 71
R++LAQGLWL++W LAG +I L ++LR + S + +P + + G ++
Sbjct: 14 RIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLAPSCQFPVLPQAALAAGAVA 73
Query: 72 CVFNSLAGKICYDALDPAKYARWKPWLKPYLAICVLFNIILFLVALCCFL-LRGSLENTL 130
+ +L+ A Y W+ L P L L +VAL L L GSL+ L
Sbjct: 74 LGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGLLVVALGLALALPGSLDEAL 133
Query: 131 GQGLKNGMKYYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEIQWISNRYLDFSSK 190
+GL + +Y+DT+ PG C K+ +D LQ+ + CCG +G++DWF +QW+S+RYLD +
Sbjct: 134 EEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGYKDWFGVQWVSSRYLDPGDR 193
Query: 191 EVKDRIKSNVDGRYLVDGVPFSCCNPSSPRPCIQYQITNNSAHYSYDHQTEELNLWVRGC 250
+V DRI+SNV+G YL DGVPFSCCNP SPRPC+Q +++++ AH +D + NLW +GC
Sbjct: 194 DVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSYAHPLFDPRQPNQNLWAQGC 253
Query: 251 RAALLSYYSSLMNSMGVVTLLIWLFEVTITIGLRYLQTSLDGVSNPEESESESQGWLLER 310
LL + L ++G + + +L + + +GLRYLQT+L+G+ ++ E+QG+L
Sbjct: 254 HEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALEGLGGVIDAGGETQGYLFPS 313
Query: 311 SVPETWK-AFLESVKKLGKGNQVEAEGADAGQAP 343
+ + K A+L+ G + E A G+AP
Sbjct: 314 GLKDMLKTAWLQG----GVACRPAPEEAPPGEAP 343
>gi|6912530 transmembrane 4 superfamily member 15 [Homo sapiens]
Length = 294
Score = 55.1 bits (131), Expect = 9e-08
Identities = 61/252 (24%), Positives = 113/252 (44%), Gaps = 47/252 (18%)
Query: 29 LAGIIIFSLGLFLKIELRKRSDVMNNSESHFVPNS--LIGMGVLSCVFNSLAGKICYDAL 86
L G ++ S+G++ ++E +K + ES F+ + LI +GV+ + + + +
Sbjct: 33 LIGALVLSVGIYAEVERQKYKTL----ESAFLAPAIILILLGVVMFMVSFIG--VLASLR 86
Query: 87 DPAKYARWKPWLKPYLAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGMK-YYRDTD 145
D + ++ L IC++ +I +VAL R + L ++ G++ YY D D
Sbjct: 87 DNLYLLQAFMYI---LGICLIMELIGGVVALT---FRNQTIDFLNDNIRRGIENYYDDLD 140
Query: 146 TPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYL 205
K +D +Q +FKCCG +RDW + N+Y D S+ L
Sbjct: 141 ------FKNIMDFVQKKFKCCGGEDYRDWSK-----NQYHDCSAPGP------------L 177
Query: 206 VDGVPFSCCNPSSPRPCIQYQITNNSAHY-SYDHQTEELN--LWVRGCRAALLSYYSSLM 262
GVP++CC ++ ++ N Y + D + + ++VRGC A++ ++
Sbjct: 178 ACGVPYTCCIRNTT------EVVNTMCGYKTIDKERFSVQDVIYVRGCTNAVIIWFMDNY 231
Query: 263 NSMGVVTLLIWL 274
M + L I L
Sbjct: 232 TIMAGILLGILL 243
>gi|4507541 transmembrane 4 superfamily member 6 [Homo sapiens]
Length = 245
Score = 53.1 bits (126), Expect = 4e-07
Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 15/167 (8%)
Query: 29 LAGIIIFSLGLFLKIELRKRSDVMNNSESHFVPNSLIGMGVLSCVFNSLAGKICYDALDP 88
+ G+I+ ++G++ K+ L ++N ++ VP LI G + + + C+
Sbjct: 30 ITGVILLAVGIWGKVSLENYFSLLNEKATN-VPFVLIATGTVIILLGTFG---CFAT--- 82
Query: 89 AKYARWKPW-LKPYLAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGMKYYRDTDTP 147
R W LK Y L ++ + A+ F+ R ++N+ + +K Y T
Sbjct: 83 ---CRASAWMLKLYAMFLTLVFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYNSTGD- 138
Query: 148 GRCFMKKTIDMLQIEFKCCGNNGFRDWFEIQWISNRYLDFSSKEVKD 194
+ +D +Q CCG +RDW + + S + S +++D
Sbjct: 139 ---YRSHAVDKIQNTLHCCGVTDYRDWTDTNYYSEKGFPKSCCKLED 182
>gi|122937466 tetraspanin 11 [Homo sapiens]
Length = 253
Score = 48.9 bits (115), Expect = 7e-06
Identities = 57/217 (26%), Positives = 87/217 (40%), Gaps = 35/217 (16%)
Query: 1 MALLKVKFDQKKRVKLAQGLWLMNWFSVLAGIIIFSLGLFLKIELRKRSDVMNNSESHFV 60
MA K + D + L L++ N+F + G + ++G++ +E V+ +S
Sbjct: 1 MAHYKTEQDDWLIIYLKYLLFVFNFFFWVGGAAVLAVGIWTLVEKSGYLSVLASSTFAAS 60
Query: 61 PNSLIGMGVLSCVFNSLA-GKICYDALDPAKYARWKPWLKPYLAICVLFNIILFLVALCC 119
LI GVL V L G I ++ K L Y C+L +++FLV L
Sbjct: 61 AYILIFAGVLVMVTGFLGFGAILWER---------KGCLSTYF--CLL--LVIFLVELVA 107
Query: 120 FLLRGSLENTLGQGLKNGMK--YYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEI 177
+L L LK + + PG + ++D LQ +FKCCG+N DW
Sbjct: 108 GVLAHVYYQRLSDELKQHLNRTLAENYGQPGATQITASVDRLQQDFKCCGSNSSADWQHS 167
Query: 178 QWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCC 214
+I R +GR VP SCC
Sbjct: 168 TYILLR---------------EAEGRQ----VPDSCC 185
>gi|87159824 CD151 antigen [Homo sapiens]
Length = 253
Score = 47.8 bits (112), Expect = 1e-05
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 27/118 (22%)
Query: 102 LAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGMKYYRDTDT-----PGRCFMKKTI 156
L + + +I+FL+ + +L + L LK +K DT T PG + +
Sbjct: 90 LRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLK---DTMTKRYHQPGHEAVTSAV 146
Query: 157 DMLQIEFKCCGNNGFRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCC 214
D LQ EF CCG+N +DW + +WI S+E R+ VP SCC
Sbjct: 147 DQLQQEFHCCGSNNSQDWRDSEWI-------RSQEAGGRV------------VPDSCC 185
>gi|87159822 CD151 antigen [Homo sapiens]
Length = 253
Score = 47.8 bits (112), Expect = 1e-05
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 27/118 (22%)
Query: 102 LAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGMKYYRDTDT-----PGRCFMKKTI 156
L + + +I+FL+ + +L + L LK +K DT T PG + +
Sbjct: 90 LRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLK---DTMTKRYHQPGHEAVTSAV 146
Query: 157 DMLQIEFKCCGNNGFRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCC 214
D LQ EF CCG+N +DW + +WI S+E R+ VP SCC
Sbjct: 147 DQLQQEFHCCGSNNSQDWRDSEWI-------RSQEAGGRV------------VPDSCC 185
>gi|21237751 CD151 antigen [Homo sapiens]
Length = 253
Score = 47.8 bits (112), Expect = 1e-05
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 27/118 (22%)
Query: 102 LAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGMKYYRDTDT-----PGRCFMKKTI 156
L + + +I+FL+ + +L + L LK +K DT T PG + +
Sbjct: 90 LRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLK---DTMTKRYHQPGHEAVTSAV 146
Query: 157 DMLQIEFKCCGNNGFRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCC 214
D LQ EF CCG+N +DW + +WI S+E R+ VP SCC
Sbjct: 147 DQLQQEFHCCGSNNSQDWRDSEWI-------RSQEAGGRV------------VPDSCC 185
>gi|21237748 CD151 antigen [Homo sapiens]
Length = 253
Score = 47.8 bits (112), Expect = 1e-05
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 27/118 (22%)
Query: 102 LAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGMKYYRDTDT-----PGRCFMKKTI 156
L + + +I+FL+ + +L + L LK +K DT T PG + +
Sbjct: 90 LRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLK---DTMTKRYHQPGHEAVTSAV 146
Query: 157 DMLQIEFKCCGNNGFRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCC 214
D LQ EF CCG+N +DW + +WI S+E R+ VP SCC
Sbjct: 147 DQLQQEFHCCGSNNSQDWRDSEWI-------RSQEAGGRV------------VPDSCC 185
>gi|190194420 tetraspanin 14 isoform 1 [Homo sapiens]
Length = 270
Score = 47.0 bits (110), Expect = 3e-05
Identities = 62/277 (22%), Positives = 107/277 (38%), Gaps = 52/277 (18%)
Query: 29 LAGIIIFSLGLFLKIELRKRSDVMNNSESHFV-PNSLIGM--------GVLSCVFNSLAG 79
LAG++ +GL+ E SD+ + H + P L+ M G CV +L
Sbjct: 28 LAGVVFLGVGLWAWSEKGVLSDLTKVTRMHGIDPVVLVLMVGVVMFTLGFAGCV-GALRE 86
Query: 80 KICYDALDPAKYARWKPWLKPYLAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGMK 139
IC L + VL + VA+ FL + + + + ++ +K
Sbjct: 87 NICL--------------LNFFCGTIVLIFFLELAVAVLAFLFQDWVRDRFREFFESNIK 132
Query: 140 YYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEIQWISNRYLDFSSKEVKDRIKSN 199
YRD ++ ID LQ +CCG G DW + + +S ++
Sbjct: 133 SYRDDID-----LQNLIDSLQKANQCCGAYGPEDWDLNVYFNCSGASYSREKC------- 180
Query: 200 VDGRYLVDGVPFSCCNPSSPRPCIQYQITNNSAHYSYDHQTE---ELNLWVRGCRAALLS 256
GVPFSCC P + ++ N Y Q + + +++ +GC AL S
Sbjct: 181 --------GVPFSCCVPDPAQ-----KVVNTQCGYDVRIQLKSKWDESIFTKGCIQALES 227
Query: 257 YYSSLMNSMGVVTLLIWLFEVTITIGLRYLQTSLDGV 293
+ + + V + I L ++ R L + ++ V
Sbjct: 228 WLPRNIYIVAGVFIAISLLQIFGIFLARTLISDIEAV 264
>gi|38787991 transmembrane 4 superfamily member 8 isoform 2 [Homo
sapiens]
Length = 228
Score = 44.3 bits (103), Expect = 2e-04
Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 46/167 (27%)
Query: 104 ICVLFNIILFLVAL--CCFLLRGS------LENTLGQGLKNGMKYYRDTDTPGRCFMKKT 155
+ + +LF++ L CC +R S +EN + + ++ K Y T+ +
Sbjct: 56 VIIAVGALLFIIGLIGCCATIRESRCGLATVENEVDRSIQKVYKTYNGTNPDAA---SRA 112
Query: 156 IDMLQIEFKCCGNNGFRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCN 215
ID +Q + CCG + + DW W KE K++ VP SCC
Sbjct: 113 IDYVQRQLHCCGIHNYSDWENTDWF---------KETKNQ------------SVPLSCCR 151
Query: 216 PSSPRPCIQYQITNNSAHYSYDHQTEELNLWVRGCRAALLSYYSSLM 262
T ++ + S H ++ L+ GC A ++ +M
Sbjct: 152 E-----------TASNCNGSLAHPSD---LYAEGCEALVVKKLQEIM 184
>gi|5032201 transmembrane 4 superfamily member 8 isoform 1 [Homo
sapiens]
Length = 253
Score = 44.3 bits (103), Expect = 2e-04
Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 38/165 (23%)
Query: 98 LKPYLAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTID 157
L ++ I +L + +V + ++ R +EN + + ++ K Y T+ + ID
Sbjct: 83 LATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKTYNGTNPDAA---SRAID 139
Query: 158 MLQIEFKCCGNNGFRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNPS 217
+Q + CCG + + DW W KE K++ VP SCC
Sbjct: 140 YVQRQLHCCGIHNYSDWENTDWF---------KETKNQ------------SVPLSCCRE- 177
Query: 218 SPRPCIQYQITNNSAHYSYDHQTEELNLWVRGCRAALLSYYSSLM 262
T ++ + S H ++ L+ GC A ++ +M
Sbjct: 178 ----------TASNCNGSLAHPSD---LYAEGCEALVVKKLQEIM 209
>gi|30425534 tetraspanin 33 [Homo sapiens]
Length = 283
Score = 42.7 bits (99), Expect = 5e-04
Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 23/169 (13%)
Query: 103 AICVLFNIILFLVA-LCCFLLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTIDMLQI 161
++C+ +L L A + F+ + + + N + +YRD ++ ID Q
Sbjct: 98 SLCLTAVFLLQLAAGILGFVFSDKARGKVSEIINNAIVHYRDD-----LDLQNLIDFGQK 152
Query: 162 EFKCCGNNGFRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNPSSPRP 221
+F CCG ++DW + N Y + S S VP+SCC P+ +
Sbjct: 153 KFSCCGGISYKDWSQ-----NMYFNCSEDNPSRERCS----------VPYSCCLPTPDQA 197
Query: 222 CIQYQITNNSAHYSYDHQTEELNLWVRGCRAALLSYYSSLMNSMGVVTL 270
I ++D+ ++ GC L+++ S + +G V L
Sbjct: 198 VINTMC--GQGMQAFDYLEASKVIYTNGCIDKLVNWIHSNLFLLGGVAL 244
>gi|21265104 tetraspanin 7 [Homo sapiens]
Length = 249
Score = 42.0 bits (97), Expect = 8e-04
Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 29 LAGIIIFSLGLFLKIELRKRSDVMNNSESHFVPNSLIGMGVLSCVFNSLAGKICYDALDP 88
+ G+I+ ++G++ K+ L ++ + ++ P LIG G VF C+
Sbjct: 28 ITGVILLAVGVWGKLTLGTYISLIAENSTN-APYVLIGTGTTIVVFGLFG---CFAT--- 80
Query: 89 AKYARWKPWLKPYLAICVLFNIILFLVALCC----FLLRGSLENTLGQGLKNGMKYYRDT 144
R PW+ L + +F ++FL L F+ R +++T + + M+ Y
Sbjct: 81 ---CRGSPWM---LKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQTYNGN 134
Query: 145 DTPGRCFMKKTIDMLQIEFKCCGNNGFRDW 174
D R +D +Q CCG + +W
Sbjct: 135 DERSRA-----VDHVQRSLSCCGVQNYTNW 159
>gi|68800032 tetraspanin 4 isoform b [Homo sapiens]
Length = 174
Score = 42.0 bits (97), Expect = 8e-04
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 98 LKPYLAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTID 157
L + + +L ++ +A+ F ++ Q LK G+ Y T G +
Sbjct: 19 LLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLKKGLHLY---GTQGNVGLTNAWS 75
Query: 158 MLQIEFKCCGNNGFRDWFEI 177
++Q +F+CCG + + DWFE+
Sbjct: 76 IIQTDFRCCGVSNYTDWFEV 95
>gi|68800005 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 42.0 bits (97), Expect = 8e-04
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 98 LKPYLAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTID 157
L + + +L ++ +A+ F ++ Q LK G+ Y T G +
Sbjct: 83 LLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLKKGLHLY---GTQGNVGLTNAWS 139
Query: 158 MLQIEFKCCGNNGFRDWFEI 177
++Q +F+CCG + + DWFE+
Sbjct: 140 IIQTDFRCCGVSNYTDWFEV 159
>gi|4507543 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 42.0 bits (97), Expect = 8e-04
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 98 LKPYLAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTID 157
L + + +L ++ +A+ F ++ Q LK G+ Y T G +
Sbjct: 83 LLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLKKGLHLY---GTQGNVGLTNAWS 139
Query: 158 MLQIEFKCCGNNGFRDWFEI 177
++Q +F+CCG + + DWFE+
Sbjct: 140 IIQTDFRCCGVSNYTDWFEV 159
>gi|68800018 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 42.0 bits (97), Expect = 8e-04
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 98 LKPYLAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTID 157
L + + +L ++ +A+ F ++ Q LK G+ Y T G +
Sbjct: 83 LLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLKKGLHLY---GTQGNVGLTNAWS 139
Query: 158 MLQIEFKCCGNNGFRDWFEI 177
++Q +F+CCG + + DWFE+
Sbjct: 140 IIQTDFRCCGVSNYTDWFEV 159
>gi|68800024 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 42.0 bits (97), Expect = 8e-04
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 98 LKPYLAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTID 157
L + + +L ++ +A+ F ++ Q LK G+ Y T G +
Sbjct: 83 LLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLKKGLHLY---GTQGNVGLTNAWS 139
Query: 158 MLQIEFKCCGNNGFRDWFEI 177
++Q +F+CCG + + DWFE+
Sbjct: 140 IIQTDFRCCGVSNYTDWFEV 159
>gi|68800011 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 42.0 bits (97), Expect = 8e-04
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 98 LKPYLAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTID 157
L + + +L ++ +A+ F ++ Q LK G+ Y T G +
Sbjct: 83 LLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLKKGLHLY---GTQGNVGLTNAWS 139
Query: 158 MLQIEFKCCGNNGFRDWFEI 177
++Q +F+CCG + + DWFE+
Sbjct: 140 IIQTDFRCCGVSNYTDWFEV 159
>gi|68799997 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 42.0 bits (97), Expect = 8e-04
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 98 LKPYLAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTID 157
L + + +L ++ +A+ F ++ Q LK G+ Y T G +
Sbjct: 83 LLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLKKGLHLY---GTQGNVGLTNAWS 139
Query: 158 MLQIEFKCCGNNGFRDWFEI 177
++Q +F+CCG + + DWFE+
Sbjct: 140 IIQTDFRCCGVSNYTDWFEV 159
>gi|5729941 tetraspanin 9 [Homo sapiens]
Length = 239
Score = 40.4 bits (93), Expect = 0.002
Identities = 30/158 (18%), Positives = 64/158 (40%), Gaps = 11/158 (6%)
Query: 20 LWLMNWFSVLAGIIIFSLGLFLKIELRKRSDVMNNSESHFVPNSLIGMGVLSCVFNSLAG 79
++L N L G + +G++L + + + S N +I +G + V L
Sbjct: 13 MFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAIGTIVMVTGFLG- 71
Query: 80 KICYDALDPAKYARWKPWLKPYLAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGMK 139
C A+ K L + + ++ + ++ + F+ + + LK G+
Sbjct: 72 --CLGAIKENKCL-----LLSFFIVLLVILLAELILLILFFVYMDKVNENAKKDLKEGLL 124
Query: 140 YYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEI 177
Y + G +K +++Q E +CCG + DW+ +
Sbjct: 125 LYHTENNVG---LKNAWNIIQAEMRCCGVTDYTDWYPV 159
>gi|190341022 tetraspanin 14 isoform 2 [Homo sapiens]
Length = 147
Score = 37.7 bits (86), Expect = 0.015
Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 25/161 (15%)
Query: 138 MKYYRDTDTPGRCFMKKTIDMLQIEF--KCCGNNGFRDWFEIQWISNRYLDFSSKEVKDR 195
M YYR ++ C+ K + I F +CCG G DW + + +S ++
Sbjct: 1 MHYYRYSNAKVSCWYKYLLFSYNIIFWNQCCGAYGPEDWDLNVYFNCSGASYSREKC--- 57
Query: 196 IKSNVDGRYLVDGVPFSCCNPSSPRPCIQYQITNNSAHYSYDHQTE---ELNLWVRGCRA 252
GVPFSCC P + ++ N Y Q + + +++ +GC
Sbjct: 58 ------------GVPFSCCVPDPAQ-----KVVNTQCGYDVRIQLKSKWDESIFTKGCIQ 100
Query: 253 ALLSYYSSLMNSMGVVTLLIWLFEVTITIGLRYLQTSLDGV 293
AL S+ + + V + I L ++ R L + ++ V
Sbjct: 101 ALESWLPRNIYIVAGVFIAISLLQIFGIFLARTLISDIEAV 141
>gi|4502693 CD9 antigen [Homo sapiens]
Length = 228
Score = 37.0 bits (84), Expect = 0.026
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 33/203 (16%)
Query: 20 LWLMNWFSVLAGIIIFSLGLFLKIELRKRS---DVMNNSESHFVPN--SLIGMGVLSCVF 74
L+ N+ LAGI + ++GL+L+ + + +S NN+ S F LIG G L +
Sbjct: 14 LFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQETNNNNSSFYTGVYILIGAGALMMLV 73
Query: 75 NSLAGKICYDALDPAKYARWKPWLKPYLAICVLFNIILFLVALCCFLLRGSLENTLGQGL 134
L C A+ ++ L + F +++F + + + S ++ + +
Sbjct: 74 GFLG---CCGAVQESQC---------MLGLFFGFLLVIFAIEIAAAIWGYSHKDEV---I 118
Query: 135 KNGMKYYRDT-------DTPGRCFMKKTIDMLQIEFKCCGNNGFRDWF--EIQWISNRYL 185
K ++Y+DT D P R +T+ + CCG G + F +I +
Sbjct: 119 KEVQEFYKDTYNKLKTKDEPQR----ETLKAIHYALNCCGLAGGVEQFISDICPKKDVLE 174
Query: 186 DFSSKEVKDRIKSNVDGRYLVDG 208
F+ K D IK D ++ + G
Sbjct: 175 TFTVKSCPDAIKEVFDNKFHIIG 197
>gi|50511934 transmembrane 4 superfamily member 17 isoform b [Homo
sapiens]
Length = 329
Score = 37.0 bits (84), Expect = 0.026
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 23/112 (20%)
Query: 106 VLFNIILFL---VALCCFLLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTIDMLQIE 162
V +I FL + F+ + + + L + N +K YRD ++ ID Q
Sbjct: 98 VFLGLIFFLELATGILAFVFKDWIRDQLNLFINNNVKAYRDDID-----LQNLIDFAQEY 152
Query: 163 FKCCGNNGFRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCC 214
+ CCG G DW N + F+ ++ + GVPFSCC
Sbjct: 153 WSCCGARGPNDW-------NLNIYFNCTDLNPSRER--------CGVPFSCC 189
>gi|54859560 transmembrane 4 superfamily member 17 isoform a [Homo
sapiens]
Length = 332
Score = 37.0 bits (84), Expect = 0.026
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 23/112 (20%)
Query: 106 VLFNIILFL---VALCCFLLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTIDMLQIE 162
V +I FL + F+ + + + L + N +K YRD ++ ID Q
Sbjct: 98 VFLGLIFFLELATGILAFVFKDWIRDQLNLFINNNVKAYRDDID-----LQNLIDFAQEY 152
Query: 163 FKCCGNNGFRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCC 214
+ CCG G DW N + F+ ++ + GVPFSCC
Sbjct: 153 WSCCGARGPNDW-------NLNIYFNCTDLNPSRER--------CGVPFSCC 189
>gi|54859505 transmembrane 4 superfamily member 17 isoform c [Homo
sapiens]
Length = 266
Score = 37.0 bits (84), Expect = 0.026
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 23/112 (20%)
Query: 106 VLFNIILFL---VALCCFLLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTIDMLQIE 162
V +I FL + F+ + + + L + N +K YRD ++ ID Q
Sbjct: 98 VFLGLIFFLELATGILAFVFKDWIRDQLNLFINNNVKAYRDDID-----LQNLIDFAQEY 152
Query: 163 FKCCGNNGFRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCC 214
+ CCG G DW N + F+ ++ + GVPFSCC
Sbjct: 153 WSCCGARGPNDW-------NLNIYFNCTDLNPSRER--------CGVPFSCC 189
>gi|4504813 CD82 antigen isoform 1 [Homo sapiens]
Length = 267
Score = 35.8 bits (81), Expect = 0.058
Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 13/166 (7%)
Query: 20 LWLMNWFSVLAGIIIFSLGLFLKIELRKRSDVMNNSESHFVPNS--LIGMGVLSCVFNSL 77
L+L N + G +I G+++ + V+ S S + IG+G ++ + L
Sbjct: 13 LFLFNLIFFILGAVILGFGVWILADKSSFISVLQTSSSSLRMGAYVFIGVGAVTMLMGFL 72
Query: 78 AGKICYDALDPAKYARWKPWLKPYLAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNG 137
C A++ + L Y A +L I + G L+ +G G+
Sbjct: 73 G---CIGAVNEVRCL-----LGLYFAFLLLILIAQVTAGALFYFNMGKLKQEMG-GIVTE 123
Query: 138 MKYYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEIQWISNR 183
+ RD ++ ++ D +Q + KCCG F +W + + NR
Sbjct: 124 L--IRDYNSSREDSLQDAWDYVQAQVKCCGWVSFYNWTDNAELMNR 167
>gi|21264583 transmembrane 4 superfamily member 9 [Homo sapiens]
Length = 268
Score = 35.8 bits (81), Expect = 0.058
Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 25/148 (16%)
Query: 106 VLFNIILFL---VALCCFLLRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTIDMLQIE 162
V II FL + F+ + +++ L + N ++ YRD ++ ID Q
Sbjct: 96 VFLGIIFFLELTAGVLAFVFKDWIKDQLYFFINNNIRAYRDDID-----LQNLIDFTQEY 150
Query: 163 FKCCGNNGFRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNPSSPRPC 222
++CCG G DW N + F+ + SN GVPFSCC
Sbjct: 151 WQCCGAFGADDW-------NLNIYFNCTD------SNASRERC--GVPFSCCTKDPAEDV 195
Query: 223 IQYQITNNSAHYSYDHQTEELNLWVRGC 250
I Q ++ +++ ++ +GC
Sbjct: 196 INTQCGYDAR--QKPEVDQQIVIYTKGC 221
>gi|10834972 CD53 antigen [Homo sapiens]
Length = 219
Score = 34.3 bits (77), Expect = 0.17
Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 16/156 (10%)
Query: 20 LWLMNWFSVLAGIIIFSLGLFLKIELRKRSDVMNNSESHFVPNSLIGMGVLSCVFNSLAG 79
L+ N + G I G++L I + +N S + N + +G + V L
Sbjct: 13 LFFFNLLFWICGCCILGFGIYLLIH-NNFGVLFHNLPSLTLGNVFVIVGSIIMVVAFLG- 70
Query: 80 KICYDALDPAKYARWKPWLKPYLAICVLFNIILFLVALCCFLLRGSLENTLGQGLKNGM- 138
C ++ K L + + ++ + +A+ F+ L + +GL + +
Sbjct: 71 --CMGSIKENKCL-----LMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLTDSIH 123
Query: 139 KYYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDW 174
+Y+ D T K D +Q +CCG NG DW
Sbjct: 124 RYHSDNST------KAAWDSIQSFLQCCGINGTSDW 153
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,274,628
Number of Sequences: 37866
Number of extensions: 574465
Number of successful extensions: 1357
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1315
Number of HSP's gapped (non-prelim): 60
length of query: 346
length of database: 18,247,518
effective HSP length: 103
effective length of query: 243
effective length of database: 14,347,320
effective search space: 3486398760
effective search space used: 3486398760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.