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Search of human proteins with 239751152
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751152 PREDICTED: hypothetical protein XP_002347737 [Homo
sapiens]
(246 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751152 PREDICTED: hypothetical protein XP_002347737 [Homo ... 518 e-147
gi|239756674 PREDICTED: hypothetical protein [Homo sapiens] 294 5e-80
gi|239745641 PREDICTED: hypothetical protein XP_002344165 [Homo ... 294 5e-80
gi|169160782 PREDICTED: hypothetical protein [Homo sapiens] 34 0.10
gi|169161514 PREDICTED: hypothetical protein [Homo sapiens] 34 0.10
gi|169161436 PREDICTED: hypothetical protein [Homo sapiens] 34 0.10
gi|31543297 neutral sphingomyelinase (N-SMase) activation associ... 33 0.23
gi|221625547 neutral sphingomyelinase (N-SMase) activation assoc... 33 0.23
gi|150417973 supervillin isoform 2 [Homo sapiens] 31 1.1
gi|150417971 supervillin isoform 1 [Homo sapiens] 31 1.1
gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [H... 30 1.5
gi|46048234 nucleolar protein 8 [Homo sapiens] 30 2.5
gi|62821790 leucine zipper protein 2 [Homo sapiens] 29 4.3
gi|21703352 myofibrillogenesis regulator 1 isoform 2 [Homo sapiens] 28 5.6
gi|116642887 myofibrillogenesis regulator 1 isoform 1 [Homo sapi... 28 5.6
gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens] 28 5.6
gi|120587019 zinc finger protein 318 [Homo sapiens] 28 5.6
gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 28 7.3
gi|50980301 myosin phosphatase-Rho interacting protein isoform 2... 28 7.3
gi|50980307 myosin phosphatase-Rho interacting protein isoform 1... 28 7.3
gi|4507921 WNT1 inducible signaling pathway protein 1 isoform 1 ... 28 9.5
gi|18491000 WNT1 inducible signaling pathway protein 1 isoform 2... 28 9.5
gi|159032029 SUMO1/sentrin specific peptidase 5 [Homo sapiens] 28 9.5
gi|219555718 synaptonemal complex central element protein 1 isof... 28 9.5
gi|9955929 acrosomal vesicle protein 1 isoform c precursor [Homo... 28 9.5
>gi|239751152 PREDICTED: hypothetical protein XP_002347737 [Homo
sapiens]
Length = 246
Score = 518 bits (1334), Expect = e-147
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MRLKVREVEGQKSCLLSTSSHRVGLDALQRRGWASQRQEKQREEASELHTAFDGARKTSD 60
MRLKVREVEGQKSCLLSTSSHRVGLDALQRRGWASQRQEKQREEASELHTAFDGARKTSD
Sbjct: 1 MRLKVREVEGQKSCLLSTSSHRVGLDALQRRGWASQRQEKQREEASELHTAFDGARKTSD 60
Query: 61 RKSPGKSASLICLETALHRQGCAQQLGDDCSHPSALCGSHPERTEQRVDHTMDVVQREHV 120
RKSPGKSASLICLETALHRQGCAQQLGDDCSHPSALCGSHPERTEQRVDHTMDVVQREHV
Sbjct: 61 RKSPGKSASLICLETALHRQGCAQQLGDDCSHPSALCGSHPERTEQRVDHTMDVVQREHV 120
Query: 121 EDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPSLLWDRDLCR 180
EDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPSLLWDRDLCR
Sbjct: 121 EDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPSLLWDRDLCR 180
Query: 181 FLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGRGMLPVEGDC 240
FLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGRGMLPVEGDC
Sbjct: 181 FLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGRGMLPVEGDC 240
Query: 241 HTATHP 246
HTATHP
Sbjct: 241 HTATHP 246
>gi|239756674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 294 bits (752), Expect = 5e-80
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 112 MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPS 171
MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPS
Sbjct: 1 MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPS 60
Query: 172 LLWDRDLCRFLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGR 231
LLWDRDLCRFLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGR
Sbjct: 61 LLWDRDLCRFLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGR 120
Query: 232 GMLPVEGDCHTATHP 246
GMLPVEGDCHTATHP
Sbjct: 121 GMLPVEGDCHTATHP 135
>gi|239745641 PREDICTED: hypothetical protein XP_002344165 [Homo
sapiens]
Length = 135
Score = 294 bits (752), Expect = 5e-80
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 112 MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPS 171
MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPS
Sbjct: 1 MDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRAQHALGPPRGPTGVDDHGALVPPS 60
Query: 172 LLWDRDLCRFLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGR 231
LLWDRDLCRFLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGR
Sbjct: 61 LLWDRDLCRFLYCSSVDGWCERQQRDPQLPDHRAQELQVLLAGKDHRALGVADDILQLGR 120
Query: 232 GMLPVEGDCHTATHP 246
GMLPVEGDCHTATHP
Sbjct: 121 GMLPVEGDCHTATHP 135
>gi|169160782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 147
Score = 34.3 bits (77), Expect = 0.10
Identities = 27/96 (28%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 32 GWASQRQEKQREEASELHTAFDGARKTSDRKSPGKSASLI----CLETAL--HRQGCAQQ 85
G A +++ Q S T+ DG R T P A LI C + HRQG
Sbjct: 13 GGAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQGCTAVCVPGHRQGHVGS 72
Query: 86 LGDDCSHPSALCGSHPERTEQRVDHTMDVVQREHVE 121
C HP+ LC + T H+ D H +
Sbjct: 73 EAQVCPHPACLCVAQQLPTRAGHTHSTDRPSHGHTD 108
>gi|169161514 PREDICTED: hypothetical protein [Homo sapiens]
Length = 147
Score = 34.3 bits (77), Expect = 0.10
Identities = 27/96 (28%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 32 GWASQRQEKQREEASELHTAFDGARKTSDRKSPGKSASLI----CLETAL--HRQGCAQQ 85
G A +++ Q S T+ DG R T P A LI C + HRQG
Sbjct: 13 GGAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQGCTAVCVPGHRQGHVGS 72
Query: 86 LGDDCSHPSALCGSHPERTEQRVDHTMDVVQREHVE 121
C HP+ LC + T H+ D H +
Sbjct: 73 EAQVCPHPACLCVAQQLPTRAGHTHSTDRPSHGHTD 108
>gi|169161436 PREDICTED: hypothetical protein [Homo sapiens]
Length = 147
Score = 34.3 bits (77), Expect = 0.10
Identities = 27/96 (28%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 32 GWASQRQEKQREEASELHTAFDGARKTSDRKSPGKSASLI----CLETAL--HRQGCAQQ 85
G A +++ Q S T+ DG R T P A LI C + HRQG
Sbjct: 13 GGAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQGCTAVCVPGHRQGHVGS 72
Query: 86 LGDDCSHPSALCGSHPERTEQRVDHTMDVVQREHVE 121
C HP+ LC + T H+ D H +
Sbjct: 73 EAQVCPHPACLCVAQQLPTRAGHTHSTDRPSHGHTD 108
>gi|31543297 neutral sphingomyelinase (N-SMase) activation
associated factor isoform 1 [Homo sapiens]
Length = 917
Score = 33.1 bits (74), Expect = 0.23
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 64 PGKSASLICLETALHRQGCAQQLGDDCSHPSALCGSHPERTEQRVDHTMDVVQREHVEDH 123
PGK ++ LHR C +LGD + +A+ S RT + ++ ++ H+E
Sbjct: 140 PGKVEDVVETLLQLHRASCLDKLGDQTAMITAILQSRLARTSFDKNRFQNISEKLHMECK 199
Query: 124 VVFGPCPLVDQPG 136
PLV PG
Sbjct: 200 AEM-VTPLVTNPG 211
>gi|221625547 neutral sphingomyelinase (N-SMase) activation
associated factor isoform 2 [Homo sapiens]
Length = 948
Score = 33.1 bits (74), Expect = 0.23
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 64 PGKSASLICLETALHRQGCAQQLGDDCSHPSALCGSHPERTEQRVDHTMDVVQREHVEDH 123
PGK ++ LHR C +LGD + +A+ S RT + ++ ++ H+E
Sbjct: 171 PGKVEDVVETLLQLHRASCLDKLGDQTAMITAILQSRLARTSFDKNRFQNISEKLHMECK 230
Query: 124 VVFGPCPLVDQPG 136
PLV PG
Sbjct: 231 AEM-VTPLVTNPG 242
>gi|150417973 supervillin isoform 2 [Homo sapiens]
Length = 2214
Score = 30.8 bits (68), Expect = 1.1
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 26 DALQRRGWASQRQEKQREEASELHTAFDGARKTSDRKSPGKSASLICLETALHRQGCAQQ 85
DA+++RG S +QE+ +AS L + G R G+S + ALH
Sbjct: 144 DAVEKRGGKSDKQEESSRDASSL---YPGTETMGLRTCAGESK-----DYALH------- 188
Query: 86 LGDDCSHPSALCGSHPERTEQRVDHT 111
+GD S P L +R Q + T
Sbjct: 189 VGDGSSDPEVLLNIENQRRGQELSAT 214
>gi|150417971 supervillin isoform 1 [Homo sapiens]
Length = 1788
Score = 30.8 bits (68), Expect = 1.1
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 26 DALQRRGWASQRQEKQREEASELHTAFDGARKTSDRKSPGKSASLICLETALHRQGCAQQ 85
DA+++RG S +QE+ +AS L + G R G+S + ALH
Sbjct: 144 DAVEKRGGKSDKQEESSRDASSL---YPGTETMGLRTCAGESK-----DYALH------- 188
Query: 86 LGDDCSHPSALCGSHPERTEQRVDHT 111
+GD S P L +R Q + T
Sbjct: 189 VGDGSSDPEVLLNIENQRRGQELSAT 214
>gi|23312364 ubiquitin-like with PHD and ring finger domains 2
[Homo sapiens]
Length = 802
Score = 30.4 bits (67), Expect = 1.5
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 1 MRLKVREVEGQKSCLLSTSSHRVGLDALQRRGWA--SQRQEKQR 42
M ++VR ++G K+C + S + ++ L+ R WA R E QR
Sbjct: 1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQR 44
>gi|46048234 nucleolar protein 8 [Homo sapiens]
Length = 1167
Score = 29.6 bits (65), Expect = 2.5
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 6 REVEGQKSCLLSTSSHRVGLDALQRRGWASQRQEKQREEASELHTAFDGARKTSDRKSPG 65
R +EG+KS LS +H +G D + ++ + E +EE S D + TS +KSP
Sbjct: 674 RPLEGKKSLSLSAKTHNIGFD--KDSCHSTTKTEASQEERS------DSSGLTSLKKSPK 725
Query: 66 KSA 68
S+
Sbjct: 726 VSS 728
>gi|62821790 leucine zipper protein 2 [Homo sapiens]
Length = 346
Score = 28.9 bits (63), Expect = 4.3
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 39 EKQREEASELHTAFDGARKTSDRKSPGKSASLICLETALHR--------QGCAQQLGDDC 90
+KQREE L A K + K+ A++ L+T + R Q + L +
Sbjct: 81 QKQREEMKSLQEALQNQLKETSEKAEKHQATINFLKTEVERKSKMIRDLQNENKSLKNKL 140
Query: 91 SHPSALCGSHPERTEQ 106
+ LCG H E +++
Sbjct: 141 LSGNKLCGIHAEESKK 156
>gi|21703352 myofibrillogenesis regulator 1 isoform 2 [Homo sapiens]
Length = 361
Score = 28.5 bits (62), Expect = 5.6
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 109 DHTMDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRA-----QHALGPPRGPTGVDD 163
+ M VQR+ +E G CP G S + +R Q ALGP GPTG DD
Sbjct: 288 ERKMQWVQRQRLERK---GTCP---STLGEERSYNPFLRTHCLALQEALGPGPGPTGDDD 341
Query: 164 H 164
+
Sbjct: 342 Y 342
>gi|116642887 myofibrillogenesis regulator 1 isoform 1 [Homo
sapiens]
Length = 385
Score = 28.5 bits (62), Expect = 5.6
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 109 DHTMDVVQREHVEDHVVFGPCPLVDQPGGTHHSPDVLVRA-----QHALGPPRGPTGVDD 163
+ M VQR+ +E G CP G S + +R Q ALGP GPTG DD
Sbjct: 312 ERKMQWVQRQRLERK---GTCP---STLGEERSYNPFLRTHCLALQEALGPGPGPTGDDD 365
Query: 164 H 164
+
Sbjct: 366 Y 366
>gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens]
Length = 605
Score = 28.5 bits (62), Expect = 5.6
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 104 TEQRVDHTMDVVQREHVEDHVVFGPCPLVDQP 135
T RVDH MD V R+ E+H C L+++P
Sbjct: 302 TSSRVDHVMDSVARKS-EEHWTCVVCTLINKP 332
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 28.5 bits (62), Expect = 5.6
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 31 RGWASQRQEKQREEASELHTAFDGARKTSDRKSPGKSASLICLETALHRQGCAQQLGDDC 90
R WAS+ Q + +++A ++T P K + + + + Q C + LGD
Sbjct: 1099 RPWASKTQSEAKQDA---------IKRTDKITVPAKGSEFLVPISGFYCQLCEEFLGDPI 1149
Query: 91 SHPSALCG-SHPERTEQRVDHTMDVVQREHVE 121
S + G H E+ ++ VD +R +++
Sbjct: 1150 SGEQHVKGHQHNEKYKKYVDENPLYEERRNLD 1181
>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
Length = 4544
Score = 28.1 bits (61), Expect = 7.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 126 FGPCPLVDQPGGTHHSPDVLVRAQH 150
FG PLV+ GG H+ DV++ QH
Sbjct: 4118 FGHSPLVNLTGGLSHASDVVLYHQH 4142
>gi|50980301 myosin phosphatase-Rho interacting protein isoform 2
[Homo sapiens]
Length = 1025
Score = 28.1 bits (61), Expect = 7.3
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Query: 44 EASELHTAFDGARKTSDRKSPGKSASLICLETALHRQGCAQQLGDDCSHPSALCGSHPER 103
E+ E +A R RK +S +T + QQL S PS +H
Sbjct: 242 ESKEEESAMSSDRMDCGRKVRVESGYFSLEKTKQDLKAEEQQLPPPLSPPSPSTPNHRRS 301
Query: 104 TEQRVDHTMDVVQREHVEDHVVFGPCPLVDQPGG 137
+D+ + EH+E + V GP P D G
Sbjct: 302 QVIEKFEALDIEKAEHMETNAV-GPSPSSDTRQG 334
>gi|50980307 myosin phosphatase-Rho interacting protein isoform 1
[Homo sapiens]
Length = 1038
Score = 28.1 bits (61), Expect = 7.3
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Query: 44 EASELHTAFDGARKTSDRKSPGKSASLICLETALHRQGCAQQLGDDCSHPSALCGSHPER 103
E+ E +A R RK +S +T + QQL S PS +H
Sbjct: 242 ESKEEESAMSSDRMDCGRKVRVESGYFSLEKTKQDLKAEEQQLPPPLSPPSPSTPNHRRS 301
Query: 104 TEQRVDHTMDVVQREHVEDHVVFGPCPLVDQPGG 137
+D+ + EH+E + V GP P D G
Sbjct: 302 QVIEKFEALDIEKAEHMETNAV-GPSPSSDTRQG 334
>gi|4507921 WNT1 inducible signaling pathway protein 1 isoform 1
precursor [Homo sapiens]
Length = 367
Score = 27.7 bits (60), Expect = 9.5
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 82 CAQQLGDDCSHPSALCGSH 100
CAQQLGD+C+ +A+C H
Sbjct: 79 CAQQLGDNCTE-AAICDPH 96
>gi|18491000 WNT1 inducible signaling pathway protein 1 isoform 2
precursor [Homo sapiens]
Length = 280
Score = 27.7 bits (60), Expect = 9.5
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 82 CAQQLGDDCSHPSALCGSH 100
CAQQLGD+C+ +A+C H
Sbjct: 79 CAQQLGDNCTE-AAICDPH 96
>gi|159032029 SUMO1/sentrin specific peptidase 5 [Homo sapiens]
Length = 755
Score = 27.7 bits (60), Expect = 9.5
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 184 CSSVDGWCERQQRDPQLPDHRAQ-------ELQVLLAGKDHRALGVADDILQL 229
CSS C D LP+HR+ E +++ G++++ V+DD ++L
Sbjct: 361 CSSPKWECTELIHDIPLPEHRSNTMFISETEREIMTLGQENQTSSVSDDRVKL 413
>gi|219555718 synaptonemal complex central element protein 1 isoform
4 [Homo sapiens]
Length = 351
Score = 27.7 bits (60), Expect = 9.5
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 102 ERTEQRVDHTMDVVQREHVEDHVVFGPCPLV-DQPGGTHHS-PDVLVRAQHALGPPRGPT 159
E+ +V Q E V P PL ++PG H + PDVL+ + L P P
Sbjct: 283 EKHGMQVPAQAQSTQEEEAGPGDVASPKPLKGERPGAAHQAGPDVLIGQEDTLHPDLSPR 342
Query: 160 GVDD 163
G +
Sbjct: 343 GFQE 346
>gi|9955929 acrosomal vesicle protein 1 isoform c precursor [Homo
sapiens]
Length = 210
Score = 27.7 bits (60), Expect = 9.5
Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 99 SHPERTEQRVDHTMDVVQ-------REHVEDHVVFGPCPLVDQPGGTHHSPDVLVRAQHA 151
S P +DH V Q EH E G P +QP G H S + + +
Sbjct: 21 SQPNELSGSIDHQTSVQQLPGEPAATEHAEGEHTVGEQPSGEQPSGEHLSGEQPLSELES 80
Query: 152 LGPPRGPTGVDDHGALVPPS 171
P +HG+ PS
Sbjct: 81 GEQPSDEQPSGEHGSGEQPS 100
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,398,504
Number of Sequences: 37866
Number of extensions: 582402
Number of successful extensions: 1458
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1448
Number of HSP's gapped (non-prelim): 28
length of query: 246
length of database: 18,247,518
effective HSP length: 100
effective length of query: 146
effective length of database: 14,460,918
effective search space: 2111294028
effective search space used: 2111294028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.