Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239751097

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens]
         (178 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens]          370   e-103
gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens]          370   e-103
gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens]          370   e-103
gi|24308326 BR serine/threonine kinase 1 [Homo sapiens]                45   3e-05
gi|239753500 PREDICTED: hypothetical protein [Homo sapiens]            41   5e-04
gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo ...    40   8e-04
gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo ...    40   8e-04
gi|57864582 hornerin [Homo sapiens]                                    39   0.002
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi...    39   0.002
gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens]     38   0.004
gi|13376335 hypothetical protein LOC79946 [Homo sapiens]               38   0.005
gi|94536852 transmembrane cochlear-expressed protein 2 [Homo sap...    37   0.007
gi|167234419 thyroid hormone receptor associated protein 3 [Homo...    37   0.007
gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens]              37   0.009
gi|55750053 atrophin-1 [Homo sapiens]                                  37   0.012
gi|55750041 atrophin-1 [Homo sapiens]                                  37   0.012
gi|239741968 PREDICTED: hypothetical protein [Homo sapiens]            36   0.015
gi|48255931 hepatoma-derived growth factor-related protein 2 iso...    36   0.015
gi|14249158 hepatoma-derived growth factor-related protein 2 iso...    36   0.015
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r...    36   0.020
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r...    36   0.020
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r...    36   0.020
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r...    36   0.020
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r...    36   0.020
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r...    36   0.020
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re...    36   0.020
gi|169171580 PREDICTED: hypothetical protein [Homo sapiens]            36   0.020
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]            36   0.020
gi|239753545 PREDICTED: similar to hCG2041452 [Homo sapiens]           36   0.020
gi|113419324 PREDICTED: hypothetical protein [Homo sapiens]            36   0.020

>gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens]
          Length = 178

 Score =  370 bits (949), Expect = e-103
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG 60
           MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG
Sbjct: 1   MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG 60

Query: 61  SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA 120
           SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA
Sbjct: 61  SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA 120

Query: 121 DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL 178
           DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL
Sbjct: 121 DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL 178


>gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens]
          Length = 178

 Score =  370 bits (949), Expect = e-103
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG 60
           MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG
Sbjct: 1   MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG 60

Query: 61  SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA 120
           SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA
Sbjct: 61  SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA 120

Query: 121 DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL 178
           DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL
Sbjct: 121 DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL 178


>gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens]
          Length = 178

 Score =  370 bits (949), Expect = e-103
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG 60
           MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG
Sbjct: 1   MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHG 60

Query: 61  SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA 120
           SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA
Sbjct: 61  SEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHA 120

Query: 121 DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL 178
           DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL
Sbjct: 121 DPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQLLPL 178


>gi|24308326 BR serine/threonine kinase 1 [Homo sapiens]
          Length = 778

 Score = 45.1 bits (105), Expect = 3e-05
 Identities = 45/142 (31%), Positives = 54/142 (38%), Gaps = 10/142 (7%)

Query: 6   SSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAP---PASKVTSASLK-----TA 57
           + AG  G  +PT R  E   H    R  S A  G  S+P   P S V S S +      A
Sbjct: 406 TDAGGGGSPVPTRRALEMAQHSQRSRSVSGASTGLSSSPLSSPRSPVFSFSPEPGAGDEA 465

Query: 58  RHGSEAAHCSQQTCARGQRVKEAGSRRARPCTPHT--AGSSRAFRDSLGPRERSPALSPT 115
           R G      +Q   +RG R   AG +   P    T   G   + R S G    SP  +P 
Sbjct: 466 RGGGSPTSKTQTLPSRGPRGGGAGEQPPPPSARSTPLPGPPGSPRSSGGTPLHSPLHTPR 525

Query: 116 PLPHADPARPPGSGPGRGHGEA 137
             P   P   P   PG G G A
Sbjct: 526 ASPTGTPGTTPPPSPGGGVGGA 547


>gi|239753500 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 213

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 25/168 (14%)

Query: 11  SGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEAAHCSQQT 70
           + G  P+ R     SHP +        P   +  PA++  +  +  A             
Sbjct: 6   ASGASPSPRSSPARSHPPAPLPFPERLPRPAAKEPAARTPARQVFPA------------- 52

Query: 71  CARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGP 130
            A   R   A    AR  TP  A S       L P  R+P   P P P   PAR PG+ P
Sbjct: 53  AASAGREGSAAPDGARGSTPGLAASRE-----LSPPPRAPRTVPAPHPRLSPARRPGAEP 107

Query: 131 GRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAAT-AGRCSAQLLP 177
                   +++      +   REP   RE  ++A  T +G C   + P
Sbjct: 108 EN------KFVALRGSHKTRNREPGMLREAFKSAPPTGSGYCPLSVRP 149


>gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo
           sapiens]
          Length = 213

 Score = 40.4 bits (93), Expect = 8e-04
 Identities = 42/168 (25%), Positives = 59/168 (35%), Gaps = 25/168 (14%)

Query: 11  SGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEAAHCSQQT 70
           + G  P  R     SHP +        P   +  PA++  +  +  A             
Sbjct: 6   ASGASPRPRSSPARSHPPAPLPFPERLPRPAAKEPAARTPARQVFPA------------- 52

Query: 71  CARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGP 130
            A   R   A    AR  TP  A S       L P  R+P   P P P   PAR PG+ P
Sbjct: 53  AASAGREGSAAPDGARGSTPGLAASRE-----LSPPPRAPRTVPAPHPRLSPARRPGAEP 107

Query: 131 GRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAAT-AGRCSAQLLP 177
                   +++      +   REP   RE  ++A  T +G C   + P
Sbjct: 108 EN------KFVALRGSHKTRNREPGMLREAFKSAPPTGSGYCPLSVRP 149


>gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo
           sapiens]
          Length = 213

 Score = 40.4 bits (93), Expect = 8e-04
 Identities = 42/168 (25%), Positives = 59/168 (35%), Gaps = 25/168 (14%)

Query: 11  SGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEAAHCSQQT 70
           + G  P  R     SHP +        P   +  PA++  +  +  A             
Sbjct: 6   ASGASPRPRSSPARSHPPAPLPFPERLPRPAAKEPAARTPARQVFPA------------- 52

Query: 71  CARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGP 130
            A   R   A    AR  TP  A S       L P  R+P   P P P   PAR PG+ P
Sbjct: 53  AASAGREGSAAPDGARGSTPGLAASRE-----LSPPPRAPRTVPAPHPRLSPARRPGAEP 107

Query: 131 GRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAAT-AGRCSAQLLP 177
                   +++      +   REP   RE  ++A  T +G C   + P
Sbjct: 108 EN------KFVALRGSHKTRNREPGMLREAFKSAPPTGSGYCPLSVRP 149


>gi|57864582 hornerin [Homo sapiens]
          Length = 2850

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 7   SAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEAAHC 66
           S  +SG     SR G+        R+GSSA   S      S  +  SL  +RHGS +   
Sbjct: 485 SGHSSGHGQHGSRSGQS---SRGERQGSSAGSSSSYGQHGSG-SRQSLGHSRHGSGSGQS 540

Query: 67  SQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPP 126
              +  R     E+GSR++    PH  GS R+   S GP E     S + L H +     
Sbjct: 541 PSPSRGR----HESGSRQSSSYGPHGYGSGRS--SSRGPYESGSGHS-SGLGHQESRSGQ 593

Query: 127 GSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCSA 173
            SG G+ HG +  +     +   ++ +   C + G    AT+G+ S+
Sbjct: 594 SSGYGQ-HGSSSGHSSTHGQHGSTSGQSSSCGQHG----ATSGQSSS 635



 Score = 35.4 bits (80), Expect = 0.026
 Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 21/142 (14%)

Query: 5    HSSAGASGGELPT-SRLGEGLSHPASR-RRGSSAWPGSCSAPPASKVTSASLKTARHGSE 62
            H   G+  G+ P+  R G GL H +S  + GS +   S   P  S++  +S+   +H S 
Sbjct: 2642 HGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSGSGRSSSRGPYESRLGHSSV-FGQHESG 2700

Query: 63   AAHCSQQT---------CARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALS 113
            + H S  +         C++GQ     GS   +  T    GSS     S G R    + S
Sbjct: 2701 SGHSSAYSQHGSGSGHFCSQGQH----GSTSGQSSTFDQEGSSTGQSSSYGHRGSGSSQS 2756

Query: 114  PTPLPHADPARPPGSGPGRGHG 135
                 H       GSG    HG
Sbjct: 2757 SGYGRHG-----AGSGQSLSHG 2773



 Score = 34.7 bits (78), Expect = 0.044
 Identities = 40/148 (27%), Positives = 54/148 (36%), Gaps = 16/148 (10%)

Query: 5    HSSAGASGGELPT-SRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEA 63
            H   G+  G  P+  R G GL H +S  +  S    S S  P    +  S    +H S +
Sbjct: 1232 HGRQGSGSGHSPSRGRHGSGLGHSSSHGQHGSGSGRSSSRGPYESRSGHSSVFGQHESGS 1291

Query: 64   AHCSQQT---------CARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSP 114
             H S  +         C++GQ     GS   +  T    GSS     S G R    + S 
Sbjct: 1292 GHSSAYSQHGSGSGHFCSQGQH----GSTSGQSSTFDQEGSSTGQSSSYGHRGSGSSQSS 1347

Query: 115  TPLPH-ADPARPPGSG-PGRGHGEAVEY 140
                H A   + P  G  G G G +  Y
Sbjct: 1348 GYGRHGAGSGQSPSRGRHGSGSGHSSSY 1375



 Score = 34.3 bits (77), Expect = 0.058
 Identities = 37/142 (26%), Positives = 52/142 (36%), Gaps = 18/142 (12%)

Query: 5    HSSAGASGGELPT-SRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEA 63
            H   G+  G+ P+  R G GL H +S  +  S    S S  P    +  S    +H S +
Sbjct: 1702 HGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSGSGRSSSRGPYESRSGHSSVFGQHESGS 1761

Query: 64   AHCSQQT---------CARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSP 114
             H S  +         C++GQ     GS   +  T    GSS     S G      + S 
Sbjct: 1762 GHSSAYSQHGSGSGHFCSQGQH----GSTSGQSSTFDQEGSSTGQSSSHGQHGSGSSQSS 1817

Query: 115  TPLPHADPARPPGSGPGRG-HG 135
            +   +       G  P RG HG
Sbjct: 1818 S---YGQQGSGSGQSPSRGRHG 1836


>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
           sapiens]
          Length = 816

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 37/122 (30%), Positives = 47/122 (38%), Gaps = 17/122 (13%)

Query: 5   HSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEAA 64
           HS+   S         G GL  PASR   SSA P   S+P  S  ++     A      A
Sbjct: 206 HSTTEPSPAARRRPSAGGGLQRPASRSLSSSATP--LSSPARSGPSARGTPRA-----PA 258

Query: 65  HCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPAR 124
           H SQ         K  G +  RP  P      +    +LGP   SP  +P+P     P+ 
Sbjct: 259 HPSQP--------KPKGLQALRP--PQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSA 308

Query: 125 PP 126
           PP
Sbjct: 309 PP 310



 Score = 32.7 bits (73), Expect = 0.17
 Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 11/133 (8%)

Query: 44  PPASKVTSASLK---TARHGSEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFR 100
           PP S+  S++L     A H S A    ++      R  ++G       +P       A  
Sbjct: 574 PPPSRSPSSTLSGPDLAGHSSSATSTPEEL-----RGYDSGPEGGAAASPPPDAELAACH 628

Query: 101 DSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRER 160
            +   R  +P L+    P A    PP +GPG   G    Y  + E  E +T  P G  + 
Sbjct: 629 PAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIY--ETEGPESATPAP-GALDP 685

Query: 161 GEAAAATAGRCSA 173
           G +   + G+ +A
Sbjct: 686 GPSPGTSGGKAAA 698


>gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens]
          Length = 951

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 39/157 (24%), Positives = 56/157 (35%), Gaps = 14/157 (8%)

Query: 26  HPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEAAHCSQQ--------TCARGQRV 77
           H +S+ R  S      S P A +    S   +R     AH  ++        T  R  R 
Sbjct: 775 HSSSKSRSRSHSKAKHSLPSAYRTVRRSRSRSRSPRRRAHSPERRREERSVPTAYRVSRS 834

Query: 78  KEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEA 137
             A  +R R  +PH     R  R     + RS ++SP+      PA P        H  +
Sbjct: 835 PGASRKRTRSRSPHEKKKKRRSRSRTKSKARSQSVSPSKQAAPRPAAPAAHS---AHSAS 891

Query: 138 VEYLEKEERRERSTREPHGCRERGEAAAATAGRCSAQ 174
           V  +E    R  S     G  +  EA  ++A   S Q
Sbjct: 892 VSPVES---RGSSQERSRGVSQEKEAQISSAIVSSVQ 925


>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
          Length = 257

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 47/179 (26%), Positives = 54/179 (30%), Gaps = 49/179 (27%)

Query: 28  ASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSEAAHCSQQTCARGQRVKEAGSRRARP 87
           A+ + G     GS   P A    S S       S         C  G+R   A  RR R 
Sbjct: 6   AATKCGEEPRSGSRRLPKAEGDKSGSAGAPSKNSSRLGGRPCMCTAGRRPNRASGRRRRS 65

Query: 88  CTP-----------------HTAGSSRAFRDSLGP-----------------RERSPALS 113
           C+P                   AG     R S  P                 R   PAL 
Sbjct: 66  CSPAPTWPPLCCYPQSRPTASAAGPGACMRASGRPHGNTTASTAPPRHPRPRRPGGPALR 125

Query: 114 PTPLPHADPARPPGSGPGRGHGEAVEYLEKEERRERSTREPHGCRERGEAAAATAGRCS 172
           PTP P A PA PP S              ++ R  R  R P   R RG  A A    C+
Sbjct: 126 PTPRPCAGPAPPPAS--------------RDCRCRRPRRWPRAGR-RGRRAGACKPSCA 169



 Score = 27.3 bits (59), Expect = 7.1
 Identities = 32/107 (29%), Positives = 40/107 (37%), Gaps = 13/107 (12%)

Query: 27  PASRRRGSSAWPGSCSAPPASKVTSA------SLKTARHGSEAAHCSQQ---TCARGQRV 77
           P + RRG  A  G+C    A    SA      S +T+  GS  A  +     TCA     
Sbjct: 152 PRAGRRGRRA--GACKPSCAGAAWSARGAPLCSYRTSCAGSCGARTAPTPAPTCASPSAA 209

Query: 78  KEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPAR 124
             +  RR R C+  T   S A     GP   + A    P   A P R
Sbjct: 210 ASSCCRRRRACSSPTTAWSGAC--GAGPTAATAAQPGKPRSAAAPGR 254


>gi|94536852 transmembrane cochlear-expressed protein 2 [Homo
           sapiens]
          Length = 906

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 10/103 (9%)

Query: 56  TARHGSEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRERSPALSPT 115
           TAR   +    S +   + Q  KE         TP +A  S+A          S + S T
Sbjct: 811 TARDSEDTPKSSSKNATQLQLTKEE-------TTPPSASQSQAMDKKAQGPGTSNSASRT 863

Query: 116 PLP---HADPARPPGSGPGRGHGEAVEYLEKEERRERSTREPH 155
            LP   H   +RPPG GP  GH  +  +  +    + + R PH
Sbjct: 864 TLPASGHLPISRPPGIGPDSGHAPSQTHPWRSASGKSAQRPPH 906


>gi|167234419 thyroid hormone receptor associated protein 3 [Homo
           sapiens]
          Length = 955

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 43/137 (31%), Positives = 54/137 (39%), Gaps = 26/137 (18%)

Query: 18  SRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTAR----HGSEAA------HCS 67
           SR  +  S   SRR  SS    + S   +SK  SA  K +       S+AA         
Sbjct: 143 SRNSDKSSSDRSRRSSSSRSSSNHSRVESSKRKSAKEKKSSSKDSRPSQAAGDNQGDEAK 202

Query: 68  QQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDS----LGPRERSPAL----------- 112
           +QT + G       S  ++P    T G+  A R S    L PRERSPAL           
Sbjct: 203 EQTFSGGTSQDTKASESSKPWPDATYGTGSASRASAVSELSPRERSPALKSPLQSVVVRR 262

Query: 113 -SPTPLPHADPARPPGS 128
            SP P P   P+ P  S
Sbjct: 263 RSPRPSPVPKPSPPLSS 279


>gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens]
          Length = 1586

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 44/148 (29%), Positives = 50/148 (33%), Gaps = 20/148 (13%)

Query: 6   SSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAP----PASKVTSASLKTARHGS 61
           SS          SR   G+S   S RR S A P     P     A      S   +R  S
Sbjct: 808 SSTSTVSSAYTVSRRSSGISPYFSSRRSSEASPLGAGRPHNASSADSYDPISTDASRRSS 867

Query: 62  EAAHCS------QQTCAR--GQRVKEAGSRRARPCTPHTAGSSRAFRDSLG----PRERS 109
           EA+ CS        T A+    R K A +    P TP       + R  L     P    
Sbjct: 868 EASQCSGGSGLLNLTPAQQYSLRAKYAAATGGPPPTPLPGLERMSLRTRLALLDAPERTL 927

Query: 110 PALSPTPLPHADPARPPGSGPGRGHGEA 137
           PA  P PL      R    GP  GHG A
Sbjct: 928 PAGCPRPLG----PRRGSDGPTYGHGHA 951


>gi|55750053 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 36.6 bits (83), Expect = 0.012
 Identities = 43/176 (24%), Positives = 65/176 (36%), Gaps = 29/176 (16%)

Query: 3   PAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSE 62
           P  SS+ +S     TS+     SHP S  +G    P      P    +SA+L T      
Sbjct: 567 PVSSSSNSSSS---TSQGSYPCSHP-SPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVA 622

Query: 63  AAHCSQQTCAR------GQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRER-------- 108
           ++    +T +       G+R    G+ +      +  GS  +FR    P  R        
Sbjct: 623 SSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSPPAGP 682

Query: 109 ------SPALSPTPLPHADPA-----RPPGSGPGRGHGEAVEYLEKEERRERSTRE 153
                 SP + P PLP A P+      PP + P  G   +   +++E   E  T E
Sbjct: 683 GTFKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASGPPLSATQIKQEPAEEYETPE 738


>gi|55750041 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 36.6 bits (83), Expect = 0.012
 Identities = 43/176 (24%), Positives = 65/176 (36%), Gaps = 29/176 (16%)

Query: 3   PAHSSAGASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPASKVTSASLKTARHGSE 62
           P  SS+ +S     TS+     SHP S  +G    P      P    +SA+L T      
Sbjct: 567 PVSSSSNSSSS---TSQGSYPCSHP-SPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVA 622

Query: 63  AAHCSQQTCAR------GQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRER-------- 108
           ++    +T +       G+R    G+ +      +  GS  +FR    P  R        
Sbjct: 623 SSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSPPAGP 682

Query: 109 ------SPALSPTPLPHADPA-----RPPGSGPGRGHGEAVEYLEKEERRERSTRE 153
                 SP + P PLP A P+      PP + P  G   +   +++E   E  T E
Sbjct: 683 GTFKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASGPPLSATQIKQEPAEEYETPE 738


>gi|239741968 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 263

 Score = 36.2 bits (82), Expect = 0.015
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 23/120 (19%)

Query: 39  GSCSAPPASKVTSASLKTARHGSEAAHCSQ-----QTCARGQRVKE---AGSRRARPCTP 90
           G+  A PA   +     + R  S+ A C++     +  A  + V+    +G+ RARP +P
Sbjct: 119 GAAGASPAGARSHPGRASRRGASDRARCARGLGGPRVAAASELVRRGLASGAARARPASP 178

Query: 91  HTA-------GSSRAFRDSL--------GPRERSPALSPTPLPHADPARPPGSGPGRGHG 135
             A       G+S A  D+          P  R       PLP + PAR PG G  R  G
Sbjct: 179 APARLLPLAVGASAAAGDTRRTEARAEPSPSRRRRRRCCAPLPGSLPARRPGCGGRRAGG 238


>gi|48255931 hepatoma-derived growth factor-related protein 2
           isoform 1 [Homo sapiens]
          Length = 671

 Score = 36.2 bits (82), Expect = 0.015
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 85  ARPCTPHTAGSSRAFRD---SLGPRERSPALSPTPLPHA---DPARPPGSGPGRGHGEAV 138
           AR  +  ++ SS +  D      PR R PA  P P P      P RPP S       + V
Sbjct: 251 ARSASSSSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKPKPERPPSSSSSDSDSDEV 310

Query: 139 EYLEKEERRERSTREPHGCRERGE 162
           + + + +RR+ + R     R R E
Sbjct: 311 DRISEWKRRDEARRRELEARRRRE 334


>gi|14249158 hepatoma-derived growth factor-related protein 2
           isoform 2 [Homo sapiens]
          Length = 670

 Score = 36.2 bits (82), Expect = 0.015
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 85  ARPCTPHTAGSSRAFRD---SLGPRERSPALSPTPLPHA---DPARPPGSGPGRGHGEAV 138
           AR  +  ++ SS +  D      PR R PA  P P P      P RPP S       + V
Sbjct: 251 ARSASSSSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKPKPERPPSSSSSDSDSDEV 310

Query: 139 EYLEKEERRERSTREPHGCRERGE 162
           + + + +RR+ + R     R R E
Sbjct: 311 DRISEWKRRDEARRRELEARRRRE 334


>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform A [Homo sapiens]
          Length = 1679

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 27  PASRRRGSSAWPGSCSAPPASKVTSA---SLKTARHGSEAAHCSQQTCARGQRVKEAGSR 83
           PAS   G S+ P   S P  + +  A   +L     G    + +Q    R Q +      
Sbjct: 135 PAS---GPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLA 191

Query: 84  RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEA 137
           R +P   H   + +  R   G +++ P L P  +    P   PG GPG G G A
Sbjct: 192 RGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245


>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform F [Homo sapiens]
          Length = 1613

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 27  PASRRRGSSAWPGSCSAPPASKVTSA---SLKTARHGSEAAHCSQQTCARGQRVKEAGSR 83
           PAS   G S+ P   S P  + +  A   +L     G    + +Q    R Q +      
Sbjct: 135 PAS---GPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLA 191

Query: 84  RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEA 137
           R +P   H   + +  R   G +++ P L P  +    P   PG GPG G G A
Sbjct: 192 RGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245


>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform E [Homo sapiens]
          Length = 1614

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 27  PASRRRGSSAWPGSCSAPPASKVTSA---SLKTARHGSEAAHCSQQTCARGQRVKEAGSR 83
           PAS   G S+ P   S P  + +  A   +L     G    + +Q    R Q +      
Sbjct: 135 PAS---GPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLA 191

Query: 84  RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEA 137
           R +P   H   + +  R   G +++ P L P  +    P   PG GPG G G A
Sbjct: 192 RGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245


>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform D [Homo sapiens]
          Length = 1616

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 27  PASRRRGSSAWPGSCSAPPASKVTSA---SLKTARHGSEAAHCSQQTCARGQRVKEAGSR 83
           PAS   G S+ P   S P  + +  A   +L     G    + +Q    R Q +      
Sbjct: 135 PAS---GPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLA 191

Query: 84  RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEA 137
           R +P   H   + +  R   G +++ P L P  +    P   PG GPG G G A
Sbjct: 192 RGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245


>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform C [Homo sapiens]
          Length = 1617

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 27  PASRRRGSSAWPGSCSAPPASKVTSA---SLKTARHGSEAAHCSQQTCARGQRVKEAGSR 83
           PAS   G S+ P   S P  + +  A   +L     G    + +Q    R Q +      
Sbjct: 135 PAS---GPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLA 191

Query: 84  RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEA 137
           R +P   H   + +  R   G +++ P L P  +    P   PG GPG G G A
Sbjct: 192 RGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245


>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 27  PASRRRGSSAWPGSCSAPPASKVTSA---SLKTARHGSEAAHCSQQTCARGQRVKEAGSR 83
           PAS   G S+ P   S P  + +  A   +L     G    + +Q    R Q +      
Sbjct: 135 PAS---GPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLA 191

Query: 84  RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEA 137
           R +P   H   + +  R   G +++ P L P  +    P   PG GPG G G A
Sbjct: 192 RGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245


>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 27  PASRRRGSSAWPGSCSAPPASKVTSA---SLKTARHGSEAAHCSQQTCARGQRVKEAGSR 83
           PAS   G S+ P   S P  + +  A   +L     G    + +Q    R Q +      
Sbjct: 135 PAS---GPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLA 191

Query: 84  RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEA 137
           R +P   H   + +  R   G +++ P L P  +    P   PG GPG G G A
Sbjct: 192 RGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPA 245


>gi|169171580 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 197

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 42/147 (28%), Positives = 51/147 (34%), Gaps = 22/147 (14%)

Query: 47  SKVTSASLKTARHGSEAAHCSQQTCARGQRVKEAGSRRARPC-------TPHTAGSSRAF 99
           SKVT    K +R G       QQ   RG+R     +  ARP         P    ++  F
Sbjct: 46  SKVTQLPDKESRDG-------QQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGF 98

Query: 100 RDSLGPRERSPALSPTPLPHAD---PARPPG----SGPGRGHGEAVEYLEKEERRERSTR 152
                P    P+  PT   H D   P R P     SGP R       + E    R RS R
Sbjct: 99  LSFRSPGAAVPSCFPTAAAHRDLGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPR 158

Query: 153 EPHG-CRERGEAAAATAGRCSAQLLPL 178
            P G      EA       C+  L P+
Sbjct: 159 RPRGSIAAAREALRELLKPCALHLAPV 185


>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 274

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 50/196 (25%), Positives = 65/196 (33%), Gaps = 26/196 (13%)

Query: 1   MWPAHSSAGASGGELPTSRLGEGLSHPASRRRGSS-----------AWPGSCSAPPASKV 49
           +W   S    +    P SR    L  P SR R  S           A PGS   PP    
Sbjct: 18  VWKPSSLIHPARSNQPPSRTCPPLPGPPSRSRSPSSRLKLPADPPRALPGSPEPPPPPPP 77

Query: 50  TSASLKTARHGSEAAHCSQQTCARGQRVKEAGSRRARPCTPHTAGSSRAFRDSLGPRER- 108
            +  +  AR  +   H    + +R       G++  RP     AG+         PR R 
Sbjct: 78  AAPHVLGARVAAGPTHRLSASHSRVSSRGPVGTKPKRPGQGRRAGARMRSAAPASPRARA 137

Query: 109 ----SPALSPTPLPHADPARPPG-----SGPGRGHGEAVEYLEKEERRERSTREPHGCRE 159
               S   SP P P   P+R        S PG  H    E   +  R  R  R   G   
Sbjct: 138 ARAISNQSSPPPPP---PSRARSRSLRLSAPGSRHD--AEKASERNRLRRKKRLVLGRGG 192

Query: 160 RGEAAAATAGRCSAQL 175
            GE A A    C+ ++
Sbjct: 193 GGECAHAHEWECARRM 208


>gi|239753545 PREDICTED: similar to hCG2041452 [Homo sapiens]
          Length = 410

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 9  GASGGELPTSRLGEGLSHPASRRRGSSAWPGSCSAPPA-SKVTSAS 53
          G SGG + T R G G + PA  RRGS + PG    P   S++T AS
Sbjct: 50 GGSGGAVGTGRRGGGAARPAPVRRGSPSSPGEPYRPEEDSRMTPAS 95


>gi|113419324 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 197

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 42/147 (28%), Positives = 51/147 (34%), Gaps = 22/147 (14%)

Query: 47  SKVTSASLKTARHGSEAAHCSQQTCARGQRVKEAGSRRARPC-------TPHTAGSSRAF 99
           SKVT    K +R G       QQ   RG+R     +  ARP         P    ++  F
Sbjct: 46  SKVTQLPDKESRDG-------QQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGF 98

Query: 100 RDSLGPRERSPALSPTPLPHAD---PARPPG----SGPGRGHGEAVEYLEKEERRERSTR 152
                P    P+  PT   H D   P R P     SGP R       + E    R RS R
Sbjct: 99  LSFRSPGAAVPSCFPTAAAHRDLGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPR 158

Query: 153 EPHG-CRERGEAAAATAGRCSAQLLPL 178
            P G      EA       C+  L P+
Sbjct: 159 RPRGSIAAAREALRELLKPCALHLAPV 185


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.126    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,108,498
Number of Sequences: 37866
Number of extensions: 545535
Number of successful extensions: 4462
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 502
Number of HSP's that attempted gapping in prelim test: 3885
Number of HSP's gapped (non-prelim): 1005
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press