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Search of human proteins with 239750454
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750454 PREDICTED: hypothetical protein XP_002347366 [Homo
sapiens]
(144 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750454 PREDICTED: hypothetical protein XP_002347366 [Homo ... 308 8e-85
gi|239755947 PREDICTED: hypothetical protein [Homo sapiens] 268 1e-72
gi|239744756 PREDICTED: hypothetical protein XP_002343266 [Homo ... 268 1e-72
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 34 0.037
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 34 0.037
gi|56549696 E1A binding protein p400 [Homo sapiens] 34 0.048
gi|4501957 alpha-1D-adrenergic receptor [Homo sapiens] 34 0.048
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 34 0.048
gi|149773484 leucine rich repeat and fibronectin type III domain... 33 0.11
gi|169194701 PREDICTED: hypothetical protein [Homo sapiens] 32 0.18
gi|89031838 PREDICTED: hypothetical protein [Homo sapiens] 32 0.18
gi|89030878 PREDICTED: hypothetical protein [Homo sapiens] 32 0.18
gi|71143119 signal-induced proliferation-associated 1 like 3 [Ho... 32 0.18
gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming ... 32 0.24
gi|38327037 hyperpolarization activated cyclic nucleotide-gated ... 31 0.31
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 31 0.31
gi|13994287 BTE-binding protein 4 [Homo sapiens] 31 0.41
gi|38787970 tensin like C1 domain containing phosphatase isoform... 31 0.41
gi|38787957 tensin like C1 domain containing phosphatase isoform... 31 0.41
gi|38787941 tensin like C1 domain containing phosphatase isoform... 31 0.41
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 31 0.41
gi|20143482 melanoma antigen family E, 1 [Homo sapiens] 31 0.41
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 30 0.54
gi|226442736 ring finger protein 222 [Homo sapiens] 30 0.54
gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens] 30 0.54
gi|150170670 piccolo isoform 2 [Homo sapiens] 30 0.54
gi|150378539 piccolo isoform 1 [Homo sapiens] 30 0.54
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 30 0.54
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 30 0.70
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 30 0.70
>gi|239750454 PREDICTED: hypothetical protein XP_002347366 [Homo
sapiens]
Length = 144
Score = 308 bits (790), Expect = 8e-85
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MENRKWGWLQIPAGNGNSPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRS 60
MENRKWGWLQIPAGNGNSPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRS
Sbjct: 1 MENRKWGWLQIPAGNGNSPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRS 60
Query: 61 NGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGR 120
NGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGR
Sbjct: 61 NGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGR 120
Query: 121 EPHAGPVSQCADYKRRKKSSSSEY 144
EPHAGPVSQCADYKRRKKSSSSEY
Sbjct: 121 EPHAGPVSQCADYKRRKKSSSSEY 144
>gi|239755947 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 268 bits (685), Expect = 1e-72
Identities = 126/127 (99%), Positives = 127/127 (100%)
Query: 18 SPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT 77
+PGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT
Sbjct: 3 TPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT 62
Query: 78 QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK 137
QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK
Sbjct: 63 QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK 122
Query: 138 KSSSSEY 144
KSSSSEY
Sbjct: 123 KSSSSEY 129
>gi|239744756 PREDICTED: hypothetical protein XP_002343266 [Homo
sapiens]
Length = 140
Score = 268 bits (685), Expect = 1e-72
Identities = 126/127 (99%), Positives = 127/127 (100%)
Query: 18 SPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT 77
+PGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT
Sbjct: 14 TPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT 73
Query: 78 QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK 137
QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK
Sbjct: 74 QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK 133
Query: 138 KSSSSEY 144
KSSSSEY
Sbjct: 134 KSSSSEY 140
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 34.3 bits (77), Expect = 0.037
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 38 PLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVES-------VPQKA 90
P+P PS +P + + +RS R + SP +A A L L+++ V Q+A
Sbjct: 587 PIPPPAPSQSSPPEQPQSMEMRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQA 646
Query: 91 TDRMPDPRPISRHGLCAFH 109
M DP + G+ A H
Sbjct: 647 VKEMNDPSQPNEEGITALH 665
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 34.3 bits (77), Expect = 0.037
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 38 PLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVES-------VPQKA 90
P+P PS +P + + +RS R + SP +A A L L+++ V Q+A
Sbjct: 587 PIPPPAPSQSSPPEQPQSMEMRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQA 646
Query: 91 TDRMPDPRPISRHGLCAFH 109
M DP + G+ A H
Sbjct: 647 VKEMNDPSQPNEEGITALH 665
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 33.9 bits (76), Expect = 0.048
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 34 PRKRPLPASDPSWGAPITEARGPG---LRSN--GRHSSSPHRAWSAETTQLEGLVESVPQ 88
P RPLP S S AP++ + GPG RS+ R SS+ ++A S T++ G+V S P
Sbjct: 656 PCPRPLPTSSTSSLAPVSGS-GPGPSPARSSPVNRPSSATNKALSPVTSRTPGVVASAPT 714
Query: 89 K 89
K
Sbjct: 715 K 715
>gi|4501957 alpha-1D-adrenergic receptor [Homo sapiens]
Length = 572
Score = 33.9 bits (76), Expect = 0.048
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 23 AAPG-PLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEG 81
A PG PL LT+LP P P P AP+ R P P R TTQL
Sbjct: 456 APPGAPLALTALPDPDPEPPGTPEMQAPVASRRKPPSAFREWRLLGPFR---RPTTQLRA 512
Query: 82 LVESVPQK 89
V S+ K
Sbjct: 513 KVSSLSHK 520
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 33.9 bits (76), Expect = 0.048
Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 29/135 (21%)
Query: 19 PGVKAAPGPLCLTSLPRKRPLPASDP--SWGAPITEARGPGLRSNGRHSSSPHRAWSAET 76
P +A+P P P KR + S P +P+T+ R P L S R SSP R+
Sbjct: 621 PKRRASPSP------PPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREAR 674
Query: 77 TQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFR----SPEGRE---PHAGP--- 126
+ PQ P PRP R + P R SP+ R+ P P
Sbjct: 675 S---------PQPNKRHSPSPRP--RAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRR 723
Query: 127 VSQCADYKRRKKSSS 141
VS+ + K+ KK++S
Sbjct: 724 VSRTPEPKKIKKAAS 738
>gi|149773484 leucine rich repeat and fibronectin type III domain
containing 1 [Homo sapiens]
Length = 771
Score = 32.7 bits (73), Expect = 0.11
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 17 NSPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGR----HSSSPHRAW 72
N+ G AP +C+ LP P PA+ P P+TE + + GR S++ R
Sbjct: 374 NAAGEATAPVEVCVVPLPLMAPPPAAPP----PLTEPGSSDIATPGRPGANDSAAERRLV 429
Query: 73 SAETTQLEGLVESVPQKATDRMPDPRPI 100
+AE T L+ R P RP+
Sbjct: 430 AAELTSNSVLI---------RWPAQRPV 448
>gi|169194701 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 32.0 bits (71), Expect = 0.18
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 49 PITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISR------ 102
P AR P +G H+ S A T Q S P+ A+ R+ PRP++R
Sbjct: 22 PTPRARPPDC--SGGHAPSGFPALGLRTAQRPRPFSSSPRSASGRLRGPRPVARGPAHSS 79
Query: 103 --HGLCAFHPSTTFRSPEGREPHAGPVSQ 129
GL A+ P + P PV++
Sbjct: 80 SPTGLPAYLPPAAALDSQTSAPTVSPVTR 108
>gi|89031838 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 32.0 bits (71), Expect = 0.18
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 49 PITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISR------ 102
P AR P +G H+ S A T Q S P+ A+ R+ PRP++R
Sbjct: 22 PTPRARPPDC--SGGHAPSGFPALGLRTAQRPRPFSSSPRSASGRLRGPRPVARGPAHSS 79
Query: 103 --HGLCAFHPSTTFRSPEGREPHAGPVSQ 129
GL A+ P + P PV++
Sbjct: 80 SPTGLPAYLPPAAALDSQTSAPTVSPVTR 108
>gi|89030878 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 32.0 bits (71), Expect = 0.18
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 49 PITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISR------ 102
P AR P +G H+ S A T Q S P+ A+ R+ PRP++R
Sbjct: 22 PTPRARPPDC--SGGHAPSGFPALGLRTAQRPRPFSSSPRSASGRLRGPRPVARGPAHSS 79
Query: 103 --HGLCAFHPSTTFRSPEGREPHAGPVSQ 129
GL A+ P + P PV++
Sbjct: 80 SPTGLPAYLPPAAALDSQTSAPTVSPVTR 108
>gi|71143119 signal-induced proliferation-associated 1 like 3 [Homo
sapiens]
Length = 1781
Score = 32.0 bits (71), Expect = 0.18
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 12/104 (11%)
Query: 31 TSLPRKRPLPASDPSWGAPITEAR---GPGLRSNGRHSSSPHRAWSA----ETTQLEGLV 83
T P RPLP SDP P LR++ R SP + + + + +L +
Sbjct: 1462 TEEPPPRPLPFSDPKKQVDTNTKNVFGQPRLRASLRDLRSPRKNYKSTIEDDLKKLIIMD 1521
Query: 84 ESVPQKATDRMPDP-----RPISRHGLCAFHPSTTFRSPEGREP 122
P++ D P R +S LC+ +F SP G EP
Sbjct: 1522 NLGPEQERDTGQSPQKGLQRTLSDESLCSGRREPSFASPAGLEP 1565
>gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming
sequence b [Homo sapiens]
Length = 982
Score = 31.6 bits (70), Expect = 0.24
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 41 ASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPI 100
ASDP P+ AR P R N +H SS +R S + L E +P P P
Sbjct: 772 ASDP---VPLPPARPP-TRDNPKHGSSLNRTPSDYDLLIPPLGEDAFDALPPSLPPPPPP 827
Query: 101 SRHGLCAFH--PSTTFRSPEGRE 121
+RH L P ++ R G++
Sbjct: 828 ARHSLIEHSKPPGSSSRPSSGQD 850
>gi|38327037 hyperpolarization activated cyclic nucleotide-gated
potassium channel 3 [Homo sapiens]
Length = 774
Score = 31.2 bits (69), Expect = 0.31
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 34 PRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKA-TD 92
PR RPL AS PS T PG + +G P GL+ P+ A
Sbjct: 707 PRGRPLSASQPSLPQRATGDGSPGRKGSGSERLPP-----------SGLLAKPPRTAQPP 755
Query: 93 RMPDPRPISRHGL 105
R P P P + GL
Sbjct: 756 RPPVPEPATPRGL 768
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 31.2 bits (69), Expect = 0.31
Identities = 36/142 (25%), Positives = 52/142 (36%), Gaps = 27/142 (19%)
Query: 7 GWLQIPAGN------GNSPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRS 60
G L +PA G P A P L +L + +S S + + + S
Sbjct: 2492 GMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSS------S 2545
Query: 61 NGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGR 120
+ SSS + S+ + + P+ A R+P P P + + EGR
Sbjct: 2546 SSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAV-----------REGR 2594
Query: 121 EPHAGPVSQCADYKRRKKSSSS 142
P P A KRR SSSS
Sbjct: 2595 PPEPTP----AKRKRRSSSSSS 2612
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 30.8 bits (68), Expect = 0.41
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 12 PAGNGNSPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGR 63
PA +G PG AAP L + L R P + P +P + + S+GR
Sbjct: 63 PAASGPGPGAAAAPHLLAASILADLRGGPGAAPGGASPASSSSAASSPSSGR 114
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 30.8 bits (68), Expect = 0.41
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 13 AGNGNSPGVKAAPGPLCLTSLPRKRPLPASDPS-WGAPITEARGPGLRSNGRHSSSP 68
AG G +P + + GP L P P S PS W + R PG S+G SP
Sbjct: 828 AGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDW----PQERSPGGHSDGASPRSP 880
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 30.8 bits (68), Expect = 0.41
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 13 AGNGNSPGVKAAPGPLCLTSLPRKRPLPASDPS-WGAPITEARGPGLRSNGRHSSSP 68
AG G +P + + GP L P P S PS W + R PG S+G SP
Sbjct: 952 AGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDW----PQERSPGGHSDGASPRSP 1004
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 30.8 bits (68), Expect = 0.41
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 13 AGNGNSPGVKAAPGPLCLTSLPRKRPLPASDPS-WGAPITEARGPGLRSNGRHSSSP 68
AG G +P + + GP L P P S PS W + R PG S+G SP
Sbjct: 962 AGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDW----PQERSPGGHSDGASPRSP 1014
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 30.8 bits (68), Expect = 0.41
Identities = 35/131 (26%), Positives = 43/131 (32%), Gaps = 24/131 (18%)
Query: 23 AAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLR--------------SNGRHSSSP 68
A GP T PR P P+ +PS P R P L S R S SP
Sbjct: 2037 ALAGP---TVPPRPEPGPSMEPSLTPPAVPPRAPILSKGPSPPLNGNILSCSPDRRSPSP 2093
Query: 69 HRA----W--SAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREP 122
+ W S ++LE P+K P PI G P T +
Sbjct: 2094 KESGRSHWDDSTSDSELEKGAREQPEKEAQSPSPPHPIPM-GSPTLWPETEAHVSPPLDS 2152
Query: 123 HAGPVSQCADY 133
H GP D+
Sbjct: 2153 HLGPARPSLDF 2163
Score = 26.6 bits (57), Expect = 7.7
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 33 LPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATD 92
+P+ RPLP AP++ A GP + H+ +P +S T + + +V +V + A +
Sbjct: 1846 VPKDRPLPP------APLSPAPGPPTPAPESHTPAP---FSWGTAEYDSVVAAVQEGAAE 1896
>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
Length = 957
Score = 30.8 bits (68), Expect = 0.41
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 38 PLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDP 97
P P PS T GPG ++ +++ + S + T EG SVP AT+ + P
Sbjct: 190 PTPDEGPSTSVLPTPGEGPG--TSVPLAATEGLSTSVQATPDEGPSTSVPPTATEGLSTP 247
Query: 98 RPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCAD 132
P +R PST+ + G P + +D
Sbjct: 248 VPPTRDE----GPSTSVPATPGEGPSTSVLPAASD 278
Score = 28.5 bits (62), Expect = 2.0
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 17/84 (20%)
Query: 9 LQIPAGNGNSPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSP 68
+Q AG G+S V PG TS+P P + S P T GP
Sbjct: 308 VQPTAGEGSSTSVPPTPGGGLSTSVP---PTATEELSTSVPPTPGEGP------------ 352
Query: 69 HRAWSAETTQLEGLVESVPQKATD 92
+ S EGL SVP A+D
Sbjct: 353 --STSVLPIPGEGLSTSVPPTASD 374
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 30.4 bits (67), Expect = 0.54
Identities = 24/59 (40%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 12 PAGNGNSPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEAR-GPGLRSNGRHSSSPH 69
P G SP K P +RPL S PSWG P E R G G+ SSSPH
Sbjct: 122 PLSGGLSPDPKPGGAPTS-----SRRPL-LSSPSWGGPEPEGRAGGGIPG----SSSPH 170
>gi|226442736 ring finger protein 222 [Homo sapiens]
Length = 220
Score = 30.4 bits (67), Expect = 0.54
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 30 LTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSP 68
L SL PL AS P+W P +AR PG S G+ + P
Sbjct: 100 LDSLGHTNPLAASSPAWRPPPGQARPPG--SPGQSAQLP 136
>gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens]
Length = 220
Score = 30.4 bits (67), Expect = 0.54
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 30 LTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSP 68
L SL PL AS P+W P +AR PG S G+ + P
Sbjct: 100 LDSLGHTNPLAASSPAWRPPPGQARPPG--SPGQSAQLP 136
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 30.4 bits (67), Expect = 0.54
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 65 SSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPE---GRE 121
S P A S + + L S P K + R PDP ++ GL + TFRS + GR
Sbjct: 70 SVPPAAAESPSMHRKQELDSSHPPKQSGRPPDPGRPAQPGLSKSRTTDTFRSEQKLPGRS 129
Query: 122 PHAGPVSQC---ADYKRRKKSS 140
P + + D K KSS
Sbjct: 130 PSTISLKESKSRTDLKEEHKSS 151
Score = 28.1 bits (61), Expect = 2.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 15 NGNSPGVKAAPGPLCLTSLPRKRPLPASDPSW--GAPITEARGPGLRS 60
+ PG KA P + P ++P PA P+ G P A+ PGL+S
Sbjct: 382 SSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQS 429
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 30.4 bits (67), Expect = 0.54
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 65 SSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPE---GRE 121
S P A S + + L S P K + R PDP ++ GL + TFRS + GR
Sbjct: 70 SVPPAAAESPSMHRKQELDSSHPPKQSGRPPDPGRPAQPGLSKSRTTDTFRSEQKLPGRS 129
Query: 122 PHAGPVSQC---ADYKRRKKSS 140
P + + D K KSS
Sbjct: 130 PSTISLKESKSRTDLKEEHKSS 151
Score = 28.1 bits (61), Expect = 2.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 15 NGNSPGVKAAPGPLCLTSLPRKRPLPASDPSW--GAPITEARGPGLRS 60
+ PG KA P + P ++P PA P+ G P A+ PGL+S
Sbjct: 382 SSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQS 429
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 30.4 bits (67), Expect = 0.54
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 11/55 (20%)
Query: 16 GNSPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHR 70
G PG K PGP P+ +P G GPGL + G H PHR
Sbjct: 193 GPGPGPKQGPGP----GGPKGGKMPGGPKPGG-------GPGLSTPGGHPKPPHR 236
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 30.0 bits (66), Expect = 0.70
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 33 LPRKRPLPASDPSWGAPITEARGPGLRSNGRHS---SSPHRAWSAETTQLEGLVESVPQK 89
LP +R + P P+ ++ P SN R S S R++ + TT+ ++S PQ+
Sbjct: 499 LPEER---SDTPEVHPPLPISQSPENESNDRRSRRYSVSERSFGSRTTKKLSTLQSAPQQ 555
Query: 90 ATDRMPDP 97
T P P
Sbjct: 556 QTSSSPPP 563
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 30.0 bits (66), Expect = 0.70
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 12 PAGNGNSPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSN--GRHSSSPH 69
PA + S A GPLC PA +WG P +R G R+ G +P
Sbjct: 59 PAASAGSQEHPGAGGPLCF---------PARSAAWGPPARASRAAGRRAGPAGPPCRAPG 109
Query: 70 RAWSAET 76
R +A T
Sbjct: 110 RGRAAAT 116
Score = 26.6 bits (57), Expect = 7.7
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 12 PAGNGNSPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRA 71
PAG + G AA + R+ P P S GA R PG + R SS R
Sbjct: 129 PAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRR- 187
Query: 72 WSA 74
W+A
Sbjct: 188 WAA 190
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,817,450
Number of Sequences: 37866
Number of extensions: 458182
Number of successful extensions: 1751
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 1606
Number of HSP's gapped (non-prelim): 281
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.