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Search of human proteins with 239750357
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750357 PREDICTED: hypothetical protein XP_002347380 [Homo
sapiens]
(240 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755861 PREDICTED: hypothetical protein [Homo sapiens] 483 e-137
gi|239750357 PREDICTED: hypothetical protein XP_002347380 [Homo ... 483 e-137
gi|239744661 PREDICTED: hypothetical protein XP_002343218 [Homo ... 483 e-137
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ... 31 1.1
gi|239754211 PREDICTED: hypothetical protein XP_002345911 [Homo ... 30 2.4
gi|239753461 PREDICTED: hypothetical protein XP_002345664 [Homo ... 30 2.4
gi|153792780 additional sex combs like 2 [Homo sapiens] 29 3.2
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 29 4.2
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 29 4.2
gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precurs... 29 4.2
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 29 4.2
gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precurs... 29 4.2
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs... 29 4.2
gi|161019170 mucin 5AC [Homo sapiens] 28 7.1
gi|4559408 colony stimulating factor 2 receptor, beta precursor ... 28 7.1
gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens] 28 7.1
gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens] 28 7.1
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 28 7.1
gi|19924103 synapsin II isoform IIa [Homo sapiens] 28 7.1
gi|19924101 synapsin II isoform IIb [Homo sapiens] 28 7.1
gi|110349799 testis-specific protein kinase 2 [Homo sapiens] 28 7.1
gi|160420317 filamin A, alpha isoform 2 [Homo sapiens] 28 9.2
gi|116063573 filamin A, alpha isoform 1 [Homo sapiens] 28 9.2
gi|5729790 CCCTC-binding factor [Homo sapiens] 28 9.2
>gi|239755861 PREDICTED: hypothetical protein [Homo sapiens]
Length = 240
Score = 483 bits (1244), Expect = e-137
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MHEAKGQTLRFGSQPCKEHLPSSPIYQQRRPVGGACGSPGKERNGGRRSGNAESSLRLEF 60
MHEAKGQTLRFGSQPCKEHLPSSPIYQQRRPVGGACGSPGKERNGGRRSGNAESSLRLEF
Sbjct: 1 MHEAKGQTLRFGSQPCKEHLPSSPIYQQRRPVGGACGSPGKERNGGRRSGNAESSLRLEF 60
Query: 61 LPQVGEAVIDLLGRGQVRQGRQQRQPAAPRALVGLSFLLHIVLSLVVREDTQVREERLQH 120
LPQVGEAVIDLLGRGQVRQGRQQRQPAAPRALVGLSFLLHIVLSLVVREDTQVREERLQH
Sbjct: 61 LPQVGEAVIDLLGRGQVRQGRQQRQPAAPRALVGLSFLLHIVLSLVVREDTQVREERLQH 120
Query: 121 RLFHRDRGGQRDRLPHASCAPARPTWLSSASHFRVLRERACAQACVRVTASTGGLVSAPL 180
RLFHRDRGGQRDRLPHASCAPARPTWLSSASHFRVLRERACAQACVRVTASTGGLVSAPL
Sbjct: 121 RLFHRDRGGQRDRLPHASCAPARPTWLSSASHFRVLRERACAQACVRVTASTGGLVSAPL 180
Query: 181 PGPLLGLREDADKGQGKREVAVAELLRRFGSCSSDYSDRQGRIGGGQFPALRSCLRSEVS 240
PGPLLGLREDADKGQGKREVAVAELLRRFGSCSSDYSDRQGRIGGGQFPALRSCLRSEVS
Sbjct: 181 PGPLLGLREDADKGQGKREVAVAELLRRFGSCSSDYSDRQGRIGGGQFPALRSCLRSEVS 240
>gi|239750357 PREDICTED: hypothetical protein XP_002347380 [Homo
sapiens]
Length = 240
Score = 483 bits (1244), Expect = e-137
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MHEAKGQTLRFGSQPCKEHLPSSPIYQQRRPVGGACGSPGKERNGGRRSGNAESSLRLEF 60
MHEAKGQTLRFGSQPCKEHLPSSPIYQQRRPVGGACGSPGKERNGGRRSGNAESSLRLEF
Sbjct: 1 MHEAKGQTLRFGSQPCKEHLPSSPIYQQRRPVGGACGSPGKERNGGRRSGNAESSLRLEF 60
Query: 61 LPQVGEAVIDLLGRGQVRQGRQQRQPAAPRALVGLSFLLHIVLSLVVREDTQVREERLQH 120
LPQVGEAVIDLLGRGQVRQGRQQRQPAAPRALVGLSFLLHIVLSLVVREDTQVREERLQH
Sbjct: 61 LPQVGEAVIDLLGRGQVRQGRQQRQPAAPRALVGLSFLLHIVLSLVVREDTQVREERLQH 120
Query: 121 RLFHRDRGGQRDRLPHASCAPARPTWLSSASHFRVLRERACAQACVRVTASTGGLVSAPL 180
RLFHRDRGGQRDRLPHASCAPARPTWLSSASHFRVLRERACAQACVRVTASTGGLVSAPL
Sbjct: 121 RLFHRDRGGQRDRLPHASCAPARPTWLSSASHFRVLRERACAQACVRVTASTGGLVSAPL 180
Query: 181 PGPLLGLREDADKGQGKREVAVAELLRRFGSCSSDYSDRQGRIGGGQFPALRSCLRSEVS 240
PGPLLGLREDADKGQGKREVAVAELLRRFGSCSSDYSDRQGRIGGGQFPALRSCLRSEVS
Sbjct: 181 PGPLLGLREDADKGQGKREVAVAELLRRFGSCSSDYSDRQGRIGGGQFPALRSCLRSEVS 240
>gi|239744661 PREDICTED: hypothetical protein XP_002343218 [Homo
sapiens]
Length = 240
Score = 483 bits (1244), Expect = e-137
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MHEAKGQTLRFGSQPCKEHLPSSPIYQQRRPVGGACGSPGKERNGGRRSGNAESSLRLEF 60
MHEAKGQTLRFGSQPCKEHLPSSPIYQQRRPVGGACGSPGKERNGGRRSGNAESSLRLEF
Sbjct: 1 MHEAKGQTLRFGSQPCKEHLPSSPIYQQRRPVGGACGSPGKERNGGRRSGNAESSLRLEF 60
Query: 61 LPQVGEAVIDLLGRGQVRQGRQQRQPAAPRALVGLSFLLHIVLSLVVREDTQVREERLQH 120
LPQVGEAVIDLLGRGQVRQGRQQRQPAAPRALVGLSFLLHIVLSLVVREDTQVREERLQH
Sbjct: 61 LPQVGEAVIDLLGRGQVRQGRQQRQPAAPRALVGLSFLLHIVLSLVVREDTQVREERLQH 120
Query: 121 RLFHRDRGGQRDRLPHASCAPARPTWLSSASHFRVLRERACAQACVRVTASTGGLVSAPL 180
RLFHRDRGGQRDRLPHASCAPARPTWLSSASHFRVLRERACAQACVRVTASTGGLVSAPL
Sbjct: 121 RLFHRDRGGQRDRLPHASCAPARPTWLSSASHFRVLRERACAQACVRVTASTGGLVSAPL 180
Query: 181 PGPLLGLREDADKGQGKREVAVAELLRRFGSCSSDYSDRQGRIGGGQFPALRSCLRSEVS 240
PGPLLGLREDADKGQGKREVAVAELLRRFGSCSSDYSDRQGRIGGGQFPALRSCLRSEVS
Sbjct: 181 PGPLLGLREDADKGQGKREVAVAELLRRFGSCSSDYSDRQGRIGGGQFPALRSCLRSEVS 240
>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
sapiens]
Length = 944
Score = 30.8 bits (68), Expect = 1.1
Identities = 34/105 (32%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 30 RPVGGACGSPGKERNGGRRSGNAESSLRLEFLPQVGEAVIDLLGRGQVRQGRQQRQPAAP 89
RP G A G GK R GG G R +L +G LLG G+ R G R
Sbjct: 606 RPEGLAAGQTGKARRGG-GGGRRGLRQRGRWLVGLGRLGGCLLGLGR-RIGPGARLVLQE 663
Query: 90 RALVGLSFLLHIVLSLVVREDTQVREERLQHRLFHRD-RGGQRDR 133
+ L S L I + + R++ L+H R RGG+R R
Sbjct: 664 QLLAAESLLAAIAAVHQLHRGLRRRQKELRHHGRGRGRRGGRRGR 708
>gi|239754211 PREDICTED: hypothetical protein XP_002345911 [Homo
sapiens]
Length = 131
Score = 29.6 bits (65), Expect = 2.4
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 127 RGGQRDRLPHASCAPARPTWLSSASHFRVLRERACAQACVRVTASTG--------GLVSA 178
RGG+ P+A+ PAR TW+ S R R R + T TG L +
Sbjct: 15 RGGRH--YPNAAAGPARGTWIPGFSAERSSRRRNTPRPPSTATMVTGRVAAGSAHALRPS 72
Query: 179 PLPGPL 184
+PGPL
Sbjct: 73 AVPGPL 78
>gi|239753461 PREDICTED: hypothetical protein XP_002345664 [Homo
sapiens]
Length = 114
Score = 29.6 bits (65), Expect = 2.4
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 4 AKGQTLRFGSQPCKEHLPSSPIYQQRRPVGGACGSPGKERNGGRRSGNAESSLRLEFLPQ 63
A QT + + P + H P +P +QRRP+ A P + RR S LR
Sbjct: 37 AGSQTFKRRASPARSHEPGNPQVEQRRPLASA-DEPARR---SRRQPLGASRLRRR--RD 90
Query: 64 VGEAVIDLLGRGQVRQGRQQRQPA 87
G V G G+VR R A
Sbjct: 91 RGPVVAVNTGPGRVRSHSVARMAA 114
>gi|153792780 additional sex combs like 2 [Homo sapiens]
Length = 1435
Score = 29.3 bits (64), Expect = 3.2
Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 23/165 (13%)
Query: 66 EAVIDLLGRGQVRQGRQQRQP--AAPRALVGLSFLLHIVLSLVVREDTQVREERLQHRLF 123
EA + R +V + RQ +QP +P+ + + + ++ + R+ F
Sbjct: 576 EAPVSWEKRPRVTENRQHQQPFQVSPQPFLNRGDRIQVRKVPPLK----IPVSRISPMPF 631
Query: 124 HRDRGGQRDRLPHASCAPARP------TWLSSASHFRVLRERACAQACVRVTASTGGLVS 177
H + R R P + +P R + A + R A A A AS GG +
Sbjct: 632 HPSQVSPRARFPVSITSPNRTGARTLADIKAKAQLVKAQRAAAAAAAAAAAAASVGGTIP 691
Query: 178 APLPGPLLGLREDADKGQGKREVAVAELLRRFGSCSSDYSDRQGR 222
P PG G + + G+G+ R GS SD G+
Sbjct: 692 GPGPG---GGQGPGEGGEGQ--------TARGGSPGSDRVSETGK 725
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 28.9 bits (63), Expect = 4.2
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 14/72 (19%)
Query: 30 RPVGGACGSP--GKER-----NGGRRSGNAESSLRLEFLPQVGEAVIDLLGRGQVRQGRQ 82
R GG C P G ++ +GG+R+G + P V E+ ID+ GR + +G
Sbjct: 247 RARGGVCFGPRPGMQKRSGGGSGGQRAGGWQPG------PSVRESCIDMAGRERPSRGAG 300
Query: 83 QRQPAAPRALVG 94
QR P R VG
Sbjct: 301 QR-PQRVRGSVG 311
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 28.9 bits (63), Expect = 4.2
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 14/72 (19%)
Query: 30 RPVGGACGSP--GKER-----NGGRRSGNAESSLRLEFLPQVGEAVIDLLGRGQVRQGRQ 82
R GG C P G ++ +GG+R+G + P V E+ ID+ GR + +G
Sbjct: 247 RARGGVCFGPRPGMQKRSGGGSGGQRAGGWQPG------PSVRESCIDMAGRERPSRGAG 300
Query: 83 QRQPAAPRALVG 94
QR P R VG
Sbjct: 301 QR-PQRVRGSVG 311
>gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precursor
[Homo sapiens]
Length = 810
Score = 28.9 bits (63), Expect = 4.2
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 43 RNGGRRSGNAESSLRLEFLPQVGEAVIDLLGRGQVRQGRQQRQ--PAAPRALVGLSFLLH 100
R+GG+ +A ++L L F + E + DL R + + + Q AL+ + FLL
Sbjct: 643 RDGGQPPLSATATLHLIFADSLQEVLPDLSDRPEPSDPQTELQFYLVVALALISVLFLLA 702
Query: 101 IVLSLVVR 108
++L++ +R
Sbjct: 703 VILAIALR 710
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 28.9 bits (63), Expect = 4.2
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 43 RNGGRRSGNAESSLRLEFLPQVGEAVIDLLGRGQVR--QGRQQRQPAAPRALVGLSFLLH 100
R+GG+ +A ++L L F + E + DL R + Q Q AL+ + FLL
Sbjct: 647 RDGGQPPLSATATLHLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLA 706
Query: 101 IVLSLVVR 108
++L++ +R
Sbjct: 707 VILAIALR 714
>gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 28.9 bits (63), Expect = 4.2
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 43 RNGGRRSGNAESSLRLEFLPQVGEAVIDLLGRGQVR--QGRQQRQPAAPRALVGLSFLLH 100
R+GG+ +A ++L L F + E + DL R + Q Q AL+ + FLL
Sbjct: 647 RDGGQPPLSATATLHLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLA 706
Query: 101 IVLSLVVR 108
++L++ +R
Sbjct: 707 VILAIALR 714
>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
[Homo sapiens]
Length = 927
Score = 28.9 bits (63), Expect = 4.2
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 43 RNGGRRSGNAESSLRLEFLPQVGEAVIDLLGRGQVRQGRQQRQ--PAAPRALVGLSFLLH 100
R+GG+ +A ++L L F + E + DL R + + + Q AL+ + FLL
Sbjct: 643 RDGGQPPLSATATLHLIFADSLQEVLPDLSDRPEPSDPQTELQFYLVVALALISVLFLLA 702
Query: 101 IVLSLVVR 108
++L++ +R
Sbjct: 703 VILAIALR 710
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 28.1 bits (61), Expect = 7.1
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 19/96 (19%)
Query: 103 LSLVVREDTQVREERLQHRLFHRDRGGQ--------------RDRLPHASCAPARPTWLS 148
L + V + QV + RL + LFH + GQ RD ASC TWL
Sbjct: 5530 LGVSVTFNGQVFQARLPYSLFHNNTEGQCGTCTNNQRDDCLQRDGTTAASCKDMAKTWLV 5589
Query: 149 SASHFRVLRERACAQACVRVTASTGGLVSA-PLPGP 183
S ++ A TAS VS+ P P P
Sbjct: 5590 PDSR----KDGCWAPTGTPPTASPAAPVSSTPTPTP 5621
>gi|4559408 colony stimulating factor 2 receptor, beta precursor
[Homo sapiens]
Length = 897
Score = 28.1 bits (61), Expect = 7.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 21 PSSPIYQQRRPVGGACGSPGKERNGG 46
P + +RRP GA GSP E GG
Sbjct: 648 PGQAVEVERRPSQGAAGSPSLESGGG 673
>gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens]
Length = 1036
Score = 28.1 bits (61), Expect = 7.1
Identities = 11/37 (29%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 44 NGGRRSGNAESSLRLEFLPQ--VGEAVIDLLGRGQVR 78
+GG + ++ ++L + +P + EAVI+++ RGQ++
Sbjct: 750 DGGDNADSSNTALNMPVIPMNTIAEAVIEMINRGQIQ 786
>gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens]
Length = 1046
Score = 28.1 bits (61), Expect = 7.1
Identities = 11/37 (29%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 44 NGGRRSGNAESSLRLEFLPQ--VGEAVIDLLGRGQVR 78
+GG + ++ ++L + +P + EAVI+++ RGQ++
Sbjct: 760 DGGDNADSSNTALNMPVIPMNTIAEAVIEMINRGQIQ 796
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 28.1 bits (61), Expect = 7.1
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 19/96 (19%)
Query: 103 LSLVVREDTQVREERLQHRLFHRDRGGQ--------------RDRLPHASCAPARPTWLS 148
L + V + QV + RL + LFH + GQ RD ASC TWL
Sbjct: 5196 LGVSVTFNGQVFQARLPYSLFHNNTEGQCGTCTNNQRDDCLQRDGTTAASCKDMAKTWLV 5255
Query: 149 SASHFRVLRERACAQACVRVTASTGGLVSA-PLPGP 183
S ++ A TAS VS+ P P P
Sbjct: 5256 PDSR----KDGCWAPTGTPPTASPAAPVSSTPTPTP 5287
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 28.1 bits (61), Expect = 7.1
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 132 DRLPHASCAPA---RPTWLSSASHFRVLRERACAQACVRVTASTGGLVSAPLPGP 183
+R P + APA PT +S F L + V+ TA++ GLV AP P P
Sbjct: 59 ERRPPPASAPAPQPAPTPSVGSSFFSSLSQ------AVKQTAASAGLVDAPAPAP 107
>gi|19924101 synapsin II isoform IIb [Homo sapiens]
Length = 478
Score = 28.1 bits (61), Expect = 7.1
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 132 DRLPHASCAPA---RPTWLSSASHFRVLRERACAQACVRVTASTGGLVSAPLPGP 183
+R P + APA PT +S F L + V+ TA++ GLV AP P P
Sbjct: 59 ERRPPPASAPAPQPAPTPSVGSSFFSSLSQ------AVKQTAASAGLVDAPAPAP 107
>gi|110349799 testis-specific protein kinase 2 [Homo sapiens]
Length = 571
Score = 28.1 bits (61), Expect = 7.1
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 107 VREDTQVREERLQ---HRLFHRDRGGQR-----DRLPHASCAPARPTWLS 148
++E+ Q R+ +LQ L + G +R D++PH S P R WLS
Sbjct: 316 LQEEEQERDRKLQPTARGLLEKAPGVKRLSSLDDKIPHKSPCPRRTIWLS 365
>gi|160420317 filamin A, alpha isoform 2 [Homo sapiens]
Length = 2647
Score = 27.7 bits (60), Expect = 9.2
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 8 TLRFGSQPCKEHLPSSPIYQQRRPV----GGACGSPGKERNGGRRSGNAESSLRLEFLPQ 63
T+++G QP +P+ P Q P G C PG E G R E S+ L Q
Sbjct: 1232 TIKYGGQP----VPNFPSKLQVEPAVDTSGVQCYGPGIEGQGVFREATTEFSVDARALTQ 1287
Query: 64 VG 65
G
Sbjct: 1288 TG 1289
>gi|116063573 filamin A, alpha isoform 1 [Homo sapiens]
Length = 2639
Score = 27.7 bits (60), Expect = 9.2
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 8 TLRFGSQPCKEHLPSSPIYQQRRPV----GGACGSPGKERNGGRRSGNAESSLRLEFLPQ 63
T+++G QP +P+ P Q P G C PG E G R E S+ L Q
Sbjct: 1232 TIKYGGQP----VPNFPSKLQVEPAVDTSGVQCYGPGIEGQGVFREATTEFSVDARALTQ 1287
Query: 64 VG 65
G
Sbjct: 1288 TG 1289
>gi|5729790 CCCTC-binding factor [Homo sapiens]
Length = 727
Score = 27.7 bits (60), Expect = 9.2
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 26 YQQRRPVG---GACGSPGKERNGGRRSGNAESSLRLEFLPQVGEAVIDLLGRGQVRQGRQ 82
YQ+RR G AC P + +GG + SS+++ + Q+ ++ + + +V +G
Sbjct: 25 YQRRREGGQEEDACHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQM--KTEVMEG-- 80
Query: 83 QRQPAAPRALVGLSFLLHIVLSLVVREDTQVREERLQ 119
AP A + I L +V E+ + LQ
Sbjct: 81 ---TVAPEAEAAVDDTQIITLQVVNMEEQPINIGELQ 114
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,490,438
Number of Sequences: 37866
Number of extensions: 510264
Number of successful extensions: 1765
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1758
Number of HSP's gapped (non-prelim): 27
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.