Guide to the Human Genome
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Search of human proteins with 239750337

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750337 PREDICTED: similar to RIKEN cDNA 1110012D08 [Homo
sapiens]
         (105 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755836 PREDICTED: hypothetical protein LOC440104 isoform 1...   212   4e-56
gi|239750337 PREDICTED: similar to RIKEN cDNA 1110012D08 [Homo s...   212   4e-56
gi|239744643 PREDICTED: hypothetical protein LOC440104 [Homo sap...   212   4e-56
gi|52353302 transmembrane protein 198 [Homo sapiens]                  110   2e-25
gi|19923957 major facilitator superfamily domain containing 3 [H...    30   0.31 
gi|225703102 major facilitator superfamily domain containing 10 ...    30   0.41 
gi|225703104 major facilitator superfamily domain containing 10 ...    30   0.41 
gi|27777671 keratinocyte associated protein 3 [Homo sapiens]           30   0.41 
gi|105554437 forkhead box B1 [Homo sapiens]                            28   1.5  
gi|52546689 olfactory receptor, family 51, subfamily G, member 2...    28   1.5  
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              28   2.0  
gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens]                27   2.6  
gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo ...    27   2.6  
gi|112421108 capicua homolog [Homo sapiens]                            27   2.6  
gi|38146116 hypothetical protein LOC10712 isoform a [Homo sapiens]     27   3.4  
gi|5453613 CD7 antigen precursor [Homo sapiens]                        27   4.5  
gi|13540477 wingless-type MMTV integration site family, member 3...    27   4.5  
gi|33469929 EGF-like, fibronectin type III and laminin G domains...    27   4.5  
gi|27597078 TYRO3 protein tyrosine kinase [Homo sapiens]               26   5.9  
gi|38194224 G protein-coupled receptor 25 [Homo sapiens]               26   5.9  
gi|239751049 PREDICTED: similar to ATPase, Ca++ transporting, fa...    26   7.7  
gi|4885333 free fatty acid receptor 2 [Homo sapiens]                   26   7.7  
gi|24415404 MDN1, midasin homolog [Homo sapiens]                       26   7.7  

>gi|239755836 PREDICTED: hypothetical protein LOC440104 isoform 1
           [Homo sapiens]
          Length = 105

 Score =  212 bits (540), Expect = 4e-56
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP 60
           MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP
Sbjct: 1   MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP 60

Query: 61  FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC 105
           FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC
Sbjct: 61  FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC 105


>gi|239750337 PREDICTED: similar to RIKEN cDNA 1110012D08 [Homo
           sapiens]
          Length = 105

 Score =  212 bits (540), Expect = 4e-56
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP 60
           MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP
Sbjct: 1   MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP 60

Query: 61  FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC 105
           FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC
Sbjct: 61  FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC 105


>gi|239744643 PREDICTED: hypothetical protein LOC440104 [Homo
           sapiens]
          Length = 105

 Score =  212 bits (540), Expect = 4e-56
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP 60
           MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP
Sbjct: 1   MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP 60

Query: 61  FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC 105
           FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC
Sbjct: 61  FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC 105


>gi|52353302 transmembrane protein 198 [Homo sapiens]
          Length = 360

 Score =  110 bits (276), Expect = 2e-25
 Identities = 59/105 (56%), Positives = 69/105 (65%), Gaps = 1/105 (0%)

Query: 1   MLVHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP 60
           MLV  VGL L GLLLGL L A ALL S P YQP S W P G L+G  LL ALLTLRWPRP
Sbjct: 111 MLVRSVGLFLVGLLLGLLLAAAALLGSAPYYQPGSVWGPLGLLLGGGLLCALLTLRWPRP 170

Query: 61  FTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSLC 105
            T L T + G+A++    DYF E L LG ++ +RL+  P +P LC
Sbjct: 171 LTTLATAVTGAALIATAADYFAELLLLGRYVVERLRAAP-VPPLC 214


>gi|19923957 major facilitator superfamily domain containing 3 [Homo
           sapiens]
          Length = 412

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 32/108 (29%), Positives = 40/108 (37%), Gaps = 29/108 (26%)

Query: 10  LTGLLLGLTLGAG---------ALLASEPIYQPPS------AWVPAGGLVGLALLGALLT 54
           + GLLL L LGA          A+   EP    P       A+     L G ALL  L T
Sbjct: 101 VAGLLLLLNLGAAMQDVALDALAVQLLEPAELGPGNTVQVVAYKLGAALAGGALLALLPT 160

Query: 55  LRWPRPFTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALP 102
             WP+ F +L  T   +A L              +W    L+ LP  P
Sbjct: 161 FSWPQLFLLLAATYWLAAAL--------------AWAAPALRRLPQQP 194



 Score = 26.9 bits (58), Expect = 3.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 65  GTTLLGSAVLVACVDYFLEGL 85
           GT L GSA+L  C+ +FL GL
Sbjct: 314 GTILRGSALLSLCLQHFLGGL 334


>gi|225703102 major facilitator superfamily domain containing 10
           [Homo sapiens]
          Length = 455

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 14  LLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRPFTVLGTTLL---- 69
           L+GLT+       +  I+  P   V A     L L+ A L + W R   VLG  LL    
Sbjct: 314 LIGLTMATIQGAYARRIH--PGGEVAAVKRALLLLVPAFLLIGWGRSLPVLGLGLLLYSF 371

Query: 70  GSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSL 104
            +AV+V C+   + G       G  + TL +L +L
Sbjct: 372 AAAVVVPCLSSVVAGYGSPGQKGTVMGTLRSLGAL 406


>gi|225703104 major facilitator superfamily domain containing 10
           [Homo sapiens]
          Length = 455

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 14  LLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRPFTVLGTTLL---- 69
           L+GLT+       +  I+  P   V A     L L+ A L + W R   VLG  LL    
Sbjct: 314 LIGLTMATIQGAYARRIH--PGGEVAAVKRALLLLVPAFLLIGWGRSLPVLGLGLLLYSF 371

Query: 70  GSAVLVACVDYFLEGLALGSWLGQRLQTLPALPSL 104
            +AV+V C+   + G       G  + TL +L +L
Sbjct: 372 AAAVVVPCLSSVVAGYGSPGQKGTVMGTLRSLGAL 406


>gi|27777671 keratinocyte associated protein 3 [Homo sapiens]
          Length = 240

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 14  LLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTL 55
           LL +++G   LLAS  + +PP  WV    L+ LAL+  LL++
Sbjct: 70  LLSVSVGLVTLLASRNLLRPPLHWV----LLALALVNLLLSV 107


>gi|105554437 forkhead box B1 [Homo sapiens]
          Length = 325

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 46  LALLGALLTLRWPRPFTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALP 102
           L  +G+ L   WP  +   G     + + +A  DY   G+ L        QTLPA+P
Sbjct: 204 LTTMGSSLGTGWPHVYGSAGMIDSATPISMASGDYSAYGVPLKPLCHAAGQTLPAIP 260


>gi|52546689 olfactory receptor, family 51, subfamily G, member 2
           [Homo sapiens]
          Length = 314

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 3   VHCVGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRPFT 62
           +HC   L + +LL +       +   P++          G +GL  LG  + L +P PF 
Sbjct: 109 IHCFSFLESSVLLSMAFDRFVAIC-HPLHYVSILTNTVIGRIGLVSLGRSVALIFPLPFM 167

Query: 63  VLGTTLLGSAVL 74
           +      GS VL
Sbjct: 168 LKRFPYCGSPVL 179


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27   SEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRPFTVLGTTLLG 70
            S+P+Y PP    P+  L GLAL G  L       F+ +  T LG
Sbjct: 1876 SQPLYLPPGPAPPSALLSGLALKGQFL------DFSTMQATELG 1913


>gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens]
          Length = 462

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 22 GALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRPFTVLGTTLLGSAVLVA 76
          G   AS   + PP     AG + GLA +   L +     FTV+G  L+  AVL +
Sbjct: 30 GVANASGASWGPPRGQYSAGAVAGLAAVVGFLIV-----FTVVGNVLVVIAVLTS 79


>gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo
           sapiens]
          Length = 1386

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 16  GLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPR 59
           GL +GAG  +    + + P+    +G   G  LLG    L W R
Sbjct: 873 GLEVGAGLAVRLARVLREPAFLAGSGAACGALLLGLCAALYWRR 916


>gi|112421108 capicua homolog [Homo sapiens]
          Length = 1608

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 10  LTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRPFTVLGTTLL 69
           +T LL+G T G GA   + P  Q  +   P GG    +  GA      P P  +L    L
Sbjct: 760 VTNLLVG-TPGYGA--PAPPAVQFIAQGAPGGGTTAGSGAGAGSGPNGPVPLGILQPGAL 816

Query: 70  GSAVLVACVDYFLEGLALGSWLGQRLQTLPA 100
           G A  +  V Y L  L       Q+LQ  PA
Sbjct: 817 GKAGGITQVQYILPTLP------QQLQVAPA 841


>gi|38146116 hypothetical protein LOC10712 isoform a [Homo sapiens]
          Length = 668

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 6   VGLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRPFTVLG 65
           V +LL  L++  ++ A ++  +E I +   +W  AG    LA  G +  + W RPFT++ 
Sbjct: 40  VQVLLGILVVTFSMVASSVTTTESIKRSCPSW--AG--FSLAFSGVVGIVSWKRPFTLVI 95

Query: 66  TTLLGSAVLVACVDYFLEGLAL 87
           +    S + V CV   + G  L
Sbjct: 96  SFF--SLLSVLCVMLSMAGSVL 115


>gi|5453613 CD7 antigen precursor [Homo sapiens]
          Length = 240

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 8  LLLTGLLLGLTLG-AGALLASEPIYQPPSAWVPAGGLVGL------ALLGALLTLRWPRP 60
          LLL  LLL L  G  GAL A E    P    VP G  V +       L G  L    P+P
Sbjct: 7  LLLLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNITCSTSGGLRGIYLRQLGPQP 66

Query: 61 FTVL 64
            ++
Sbjct: 67 QDII 70


>gi|13540477 wingless-type MMTV integration site family, member 3
          [Homo sapiens]
          Length = 355

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 10 LTGLLLGLTLGAGALLASEPIY 31
          L GLLLGL LG   +LA  PI+
Sbjct: 5  LLGLLLGLLLGGTRVLAGYPIW 26


>gi|33469929 EGF-like, fibronectin type III and laminin G domains
          isoform 1 [Homo sapiens]
          Length = 1009

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 7  GLLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTLRWPRP----FT 62
          G+LL  LLL  +LG GA+     I +P     P    +G AL     +++W  P      
Sbjct: 6  GVLLRLLLLASSLGPGAVSLRAAIRKPGKVGPPLDIKLG-ALNCTAFSIQWKMPRHPGSP 64

Query: 63 VLGTTLLGSAV 73
          +LG T+  S V
Sbjct: 65 ILGYTVFYSEV 75


>gi|27597078 TYRO3 protein tyrosine kinase [Homo sapiens]
          Length = 890

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 58  PRPFTVLGTTLLGSAVLVACVDYFLEGLALGSWLGQRLQTLPALP 102
           P P +VL  T +  + + +C  + L+GLA        LQ LPA P
Sbjct: 185 PSP-SVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQALPAAP 228


>gi|38194224 G protein-coupled receptor 25 [Homo sapiens]
          Length = 361

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 5   CVG-LLLTGLLLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTL 55
           C G LLL G+ +   L    LL + P+  P  A     G+  +ALL  L +L
Sbjct: 124 CAGALLLAGMSVDRYLAVVKLLEARPLRTPRCALASCCGVWAVALLAGLPSL 175


>gi|239751049 PREDICTED: similar to ATPase, Ca++ transporting, fast
           twitch 1 [Homo sapiens]
          Length = 879

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)

Query: 29  PIYQPPSAWVPAGG 42
           P   PP AW PAGG
Sbjct: 178 PFISPPKAWGPAGG 191


>gi|4885333 free fatty acid receptor 2 [Homo sapiens]
          Length = 330

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 43  LVGLALLGALLTLRWPRPFTVLGTTLLGSAVLVACVDYFLEGLALGSWLG 92
           L+   ++ A    RW  P  V   T  G    + C  + L G+++  +LG
Sbjct: 61  LLPFKIIEAASNFRWYLPKVVCALTSFGFYSSIYCSTWLLAGISIERYLG 110


>gi|24415404 MDN1, midasin homolog [Homo sapiens]
          Length = 5596

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 8/52 (15%)

Query: 42   GLVGLALLGALLTLRWPRPFTVLG------TTLLGSAVLVACVDYFLEGLAL 87
            GLVG ++   LL L      TV+G      +TL+ +A+L+  V Y   GL+L
Sbjct: 2334 GLVGNSVCDILLALHTETRSTVVGSPTSSVSTLIQTAILI--VQYLQRGLSL 2383


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.145    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,384,479
Number of Sequences: 37866
Number of extensions: 196745
Number of successful extensions: 639
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 24
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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