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Search of human proteins with 239750111
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750111 PREDICTED: hypothetical protein [Homo sapiens]
(175 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750111 PREDICTED: hypothetical protein [Homo sapiens] 369 e-103
gi|239755569 PREDICTED: hypothetical protein XP_002344623 [Homo ... 367 e-102
gi|239744419 PREDICTED: hypothetical protein XP_002343139 [Homo ... 367 e-102
gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo s... 37 0.007
gi|239755255 PREDICTED: hypothetical protein [Homo sapiens] 33 0.097
gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo ... 33 0.097
gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo ... 33 0.097
gi|117606370 UMP-CMP kinase 2 [Homo sapiens] 33 0.16
gi|14602439 Williams Beuren syndrome chromosome region 14 isofor... 32 0.22
gi|14602437 Williams Beuren syndrome chromosome region 14 isofor... 32 0.22
gi|14602435 Williams Beuren syndrome chromosome region 14 isofor... 32 0.22
gi|14602433 Williams Beuren syndrome chromosome region 14 isofor... 32 0.22
gi|239750710 PREDICTED: hypothetical protein [Homo sapiens] 32 0.28
gi|239745016 PREDICTED: hypothetical protein XP_002343331 [Homo ... 32 0.28
gi|12597625 activating transcription factor 5 [Homo sapiens] 32 0.28
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 32 0.28
gi|5360210 poliovirus receptor related 2 isoform alpha precursor... 32 0.37
gi|239752604 PREDICTED: similar to immunoglobulin lambda-like po... 32 0.37
gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens] 31 0.48
gi|40548415 dishevelled associated activator of morphogenesis 2 ... 31 0.48
gi|7706589 GNAS complex locus NESP55 [Homo sapiens] 31 0.63
gi|239752324 PREDICTED: hypothetical protein XP_002348199 [Homo ... 31 0.63
gi|239746835 PREDICTED: hypothetical protein XP_002344235 [Homo ... 31 0.63
gi|4503219 cytochrome P450, family 2, subfamily C, polypeptide 1... 30 0.82
gi|110611914 progesterone receptor [Homo sapiens] 30 0.82
gi|169210554 PREDICTED: FLJ44904 protein [Homo sapiens] 30 0.82
gi|11067749 bromodomain containing protein 3 [Homo sapiens] 30 0.82
gi|148276998 zinc finger protein 628 [Homo sapiens] 30 0.82
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 30 1.1
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 30 1.1
>gi|239750111 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 369 bits (948), Expect = e-103
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MEGAGVFIPCCPSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRS 60
MEGAGVFIPCCPSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRS
Sbjct: 1 MEGAGVFIPCCPSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRS 60
Query: 61 PELSWPRAPRVEGLPQSPQRVPKGVHPARWGSAKLPFLLAVPLCLVALLLRNVQRRASPR 120
PELSWPRAPRVEGLPQSPQRVPKGVHPARWGSAKLPFLLAVPLCLVALLLRNVQRRASPR
Sbjct: 61 PELSWPRAPRVEGLPQSPQRVPKGVHPARWGSAKLPFLLAVPLCLVALLLRNVQRRASPR 120
Query: 121 GRARPGYTCQSQRAVGMMCKLLWLLAPGPLGQRGTWEVLIMAPPTRQLPAYLGGR 175
GRARPGYTCQSQRAVGMMCKLLWLLAPGPLGQRGTWEVLIMAPPTRQLPAYLGGR
Sbjct: 121 GRARPGYTCQSQRAVGMMCKLLWLLAPGPLGQRGTWEVLIMAPPTRQLPAYLGGR 175
>gi|239755569 PREDICTED: hypothetical protein XP_002344623 [Homo
sapiens]
Length = 175
Score = 367 bits (941), Expect = e-102
Identities = 174/175 (99%), Positives = 174/175 (99%)
Query: 1 MEGAGVFIPCCPSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRS 60
MEGAGVFIPCCPSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRS
Sbjct: 1 MEGAGVFIPCCPSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRS 60
Query: 61 PELSWPRAPRVEGLPQSPQRVPKGVHPARWGSAKLPFLLAVPLCLVALLLRNVQRRASPR 120
PELSWPRAPRVEGLPQSPQRVPKGVHPARWGSAKLPFLLAVPLCLVALLLRNVQRRASPR
Sbjct: 61 PELSWPRAPRVEGLPQSPQRVPKGVHPARWGSAKLPFLLAVPLCLVALLLRNVQRRASPR 120
Query: 121 GRARPGYTCQSQRAVGMMCKLLWLLAPGPLGQRGTWEVLIMAPPTRQLPAYLGGR 175
GRARPGYTCQSQRAVGMMCKLLWL APGPLGQRGTWEVLIMAPPTRQLPAYLGGR
Sbjct: 121 GRARPGYTCQSQRAVGMMCKLLWLPAPGPLGQRGTWEVLIMAPPTRQLPAYLGGR 175
>gi|239744419 PREDICTED: hypothetical protein XP_002343139 [Homo
sapiens]
Length = 175
Score = 367 bits (941), Expect = e-102
Identities = 174/175 (99%), Positives = 174/175 (99%)
Query: 1 MEGAGVFIPCCPSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRS 60
MEGAGVFIPCCPSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRS
Sbjct: 1 MEGAGVFIPCCPSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRS 60
Query: 61 PELSWPRAPRVEGLPQSPQRVPKGVHPARWGSAKLPFLLAVPLCLVALLLRNVQRRASPR 120
PELSWPRAPRVEGLPQSPQRVPKGVHPARWGSAKLPFLLAVPLCLVALLLRNVQRRASPR
Sbjct: 61 PELSWPRAPRVEGLPQSPQRVPKGVHPARWGSAKLPFLLAVPLCLVALLLRNVQRRASPR 120
Query: 121 GRARPGYTCQSQRAVGMMCKLLWLLAPGPLGQRGTWEVLIMAPPTRQLPAYLGGR 175
GRARPGYTCQSQRAVGMMCKLLWL APGPLGQRGTWEVLIMAPPTRQLPAYLGGR
Sbjct: 121 GRARPGYTCQSQRAVGMMCKLLWLPAPGPLGQRGTWEVLIMAPPTRQLPAYLGGR 175
>gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo
sapiens]
Length = 412
Score = 37.4 bits (85), Expect = 0.007
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 2 EGAGVFIPCCPSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELR-- 59
+G G P CP PP PP P H + L V + ++A + E R
Sbjct: 14 QGVGPLAPACPLLPPQPPLPDHRTLQAPEGALGNVGAE--------EEEDAEEDEEKREE 65
Query: 60 ---SPELSWPRAPRVEGLPQSPQRVPKGVHPARW 90
E + P +G P SP P G+HP W
Sbjct: 66 AGAEEEAAEESRPGAQG-PSSPSSQPPGLHPHEW 98
>gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 33.5 bits (75), Expect = 0.097
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 31 AHLVQVLGQCVVQKLLVFLQEAAQALELRSPELSWPRAPRV-------EGLPQSPQRVPK 83
AHLV V+G+ V+Q L + L A LEL + RV PQ+ R +
Sbjct: 94 AHLVDVVGEAVIQLLQLHLLVGAGVLELGVDGVGQREVHRVLQEPHPGHAAPQAHGRGAR 153
Query: 84 GVHPAR 89
G+H AR
Sbjct: 154 GIHAAR 159
>gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo
sapiens]
Length = 446
Score = 33.5 bits (75), Expect = 0.097
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 31 AHLVQVLGQCVVQKLLVFLQEAAQALELRSPELSWPRAPRV-------EGLPQSPQRVPK 83
AHLV V+G+ V+Q L + L A LEL + RV PQ+ R +
Sbjct: 243 AHLVDVVGEAVIQLLQLHLLVGAGVLELGVDGVGQREVHRVLQEPHPGHAAPQAHGRGAR 302
Query: 84 GVHPAR 89
G+H AR
Sbjct: 303 GIHAAR 308
>gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo
sapiens]
Length = 446
Score = 33.5 bits (75), Expect = 0.097
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 31 AHLVQVLGQCVVQKLLVFLQEAAQALELRSPELSWPRAPRV-------EGLPQSPQRVPK 83
AHLV V+G+ V+Q L + L A LEL + RV PQ+ R +
Sbjct: 243 AHLVDVVGEAVIQLLQLHLLVGAGVLELGVDGVGQREVHRVLQEPHPGHAAPQAHGRGAR 302
Query: 84 GVHPAR 89
G+H AR
Sbjct: 303 GIHAAR 308
>gi|117606370 UMP-CMP kinase 2 [Homo sapiens]
Length = 449
Score = 32.7 bits (73), Expect = 0.16
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 11 CPSCPPCPPAPVHPLIPPTPAHLV---QVLGQCVVQKLLVFLQEAAQALEL 58
C P P P+HP++P P+ +V + + V+++ F+ EA L+L
Sbjct: 189 CAQVVPVPEPPLHPVVPDLPSSVVFPDREAARAVLEECTSFIPEARAVLDL 239
>gi|14602439 Williams Beuren syndrome chromosome region 14 isoform
delta [Homo sapiens]
Length = 831
Score = 32.3 bits (72), Expect = 0.22
Identities = 24/80 (30%), Positives = 28/80 (35%), Gaps = 30/80 (37%)
Query: 12 PSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRSPELSWPRAPRV 71
P PCPP P P+ PPT LQE L SP +P P
Sbjct: 405 PGLEPCPPPPFPPMAPPT-----------------ALLQEE----PLFSPRFPFPTVPPA 443
Query: 72 EGL---------PQSPQRVP 82
G+ P +PQ VP
Sbjct: 444 PGVSPLPAPAAFPPTPQSVP 463
>gi|14602437 Williams Beuren syndrome chromosome region 14 isoform
gamma [Homo sapiens]
Length = 850
Score = 32.3 bits (72), Expect = 0.22
Identities = 24/80 (30%), Positives = 28/80 (35%), Gaps = 30/80 (37%)
Query: 12 PSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRSPELSWPRAPRV 71
P PCPP P P+ PPT LQE L SP +P P
Sbjct: 405 PGLEPCPPPPFPPMAPPT-----------------ALLQEE----PLFSPRFPFPTVPPA 443
Query: 72 EGL---------PQSPQRVP 82
G+ P +PQ VP
Sbjct: 444 PGVSPLPAPAAFPPTPQSVP 463
>gi|14602435 Williams Beuren syndrome chromosome region 14 isoform
beta [Homo sapiens]
Length = 833
Score = 32.3 bits (72), Expect = 0.22
Identities = 24/80 (30%), Positives = 28/80 (35%), Gaps = 30/80 (37%)
Query: 12 PSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRSPELSWPRAPRV 71
P PCPP P P+ PPT LQE L SP +P P
Sbjct: 405 PGLEPCPPPPFPPMAPPT-----------------ALLQEE----PLFSPRFPFPTVPPA 443
Query: 72 EGL---------PQSPQRVP 82
G+ P +PQ VP
Sbjct: 444 PGVSPLPAPAAFPPTPQSVP 463
>gi|14602433 Williams Beuren syndrome chromosome region 14 isoform
alpha [Homo sapiens]
Length = 852
Score = 32.3 bits (72), Expect = 0.22
Identities = 24/80 (30%), Positives = 28/80 (35%), Gaps = 30/80 (37%)
Query: 12 PSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRSPELSWPRAPRV 71
P PCPP P P+ PPT LQE L SP +P P
Sbjct: 405 PGLEPCPPPPFPPMAPPT-----------------ALLQEE----PLFSPRFPFPTVPPA 443
Query: 72 EGL---------PQSPQRVP 82
G+ P +PQ VP
Sbjct: 444 PGVSPLPAPAAFPPTPQSVP 463
>gi|239750710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 317
Score = 32.0 bits (71), Expect = 0.28
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 18/67 (26%)
Query: 12 PSCPP----------CPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRSP 61
P+CPP CPP P P+ P P +Q G C+ LQ + QA P
Sbjct: 36 PTCPPTSENADRSCGCPP-PAPPISPARPTSFLQGPGSCL-------LQRSGQAPYFFLP 87
Query: 62 ELSWPRA 68
+ + P+A
Sbjct: 88 DFTTPQA 94
>gi|239745016 PREDICTED: hypothetical protein XP_002343331 [Homo
sapiens]
Length = 317
Score = 32.0 bits (71), Expect = 0.28
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 18/67 (26%)
Query: 12 PSCPP----------CPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRSP 61
P+CPP CPP P P+ P P +Q G C+ LQ + QA P
Sbjct: 36 PTCPPTSENADRSCGCPP-PAPPISPARPTSFLQGPGSCL-------LQRSGQAPYFFLP 87
Query: 62 ELSWPRA 68
+ + P+A
Sbjct: 88 DFTTPQA 94
>gi|12597625 activating transcription factor 5 [Homo sapiens]
Length = 282
Score = 32.0 bits (71), Expect = 0.28
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 7 FIPCCPSCPPCPPAPVHPLIPPTPA--------HLVQVLGQCVVQKLLVFLQEAAQALEL 58
F+ P PP PP P +PP P+ L Q + L ++ + A E+
Sbjct: 116 FLDAPPLPPPSPPPLPPPPLPPAPSLPLSLPSFDLPQPPVLDTLDLLAIYCRNEAGQEEV 175
Query: 59 RSPELSWPRAPRVEGLPQSPQRVPKGVHPA 88
P L P+ P PQ P R+ HPA
Sbjct: 176 GMPPLPPPQQPPPPSPPQ-PSRLAPYPHPA 204
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 32.0 bits (71), Expect = 0.28
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 8 IPCCPSCPPCPPAPVHPLIPP 28
+PC P PP PP P P +PP
Sbjct: 219 VPCAPPPPPPPPPPTPPPLPP 239
Score = 28.1 bits (61), Expect = 4.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 6 VFIPCCPSCPPCPPAPVHPLIPPTP 30
V P P PP PP P P PP P
Sbjct: 214 VVAPPVPCAPPPPPPPPPPTPPPLP 238
Score = 27.3 bits (59), Expect = 6.9
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 8 IPCCPSCPPCPPAPVHPLIPPTPA 31
+P P PP PP P PL PP P+
Sbjct: 171 VPAPP--PPTPPPPPPPLPPPLPS 192
>gi|5360210 poliovirus receptor related 2 isoform alpha precursor
[Homo sapiens]
Length = 479
Score = 31.6 bits (70), Expect = 0.37
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 67 RAPRVEGLPQSPQRVPKGVHPARWGSAK---LPFLLAVPLCLVALLLRNVQRRASPRG-- 121
RA +V + ++P+ P+ V P WG+ L LL L +LLR +RR SP G
Sbjct: 339 RAEQVIFVRETPRASPRDVGPLVWGAVGGTLLVLLLLAGGSLAFILLRVRRRRKSPGGAG 398
Query: 122 ---RARPGYTCQSQRAVGMMCKLLWL-LAPGPLGQRG 154
G+ + +G + W + PGP+ G
Sbjct: 399 GGASGDGGFYDPKAQVLGNGDPVFWTPVVPGPMEPDG 435
>gi|239752604 PREDICTED: similar to immunoglobulin lambda-like
polypeptide 1 [Homo sapiens]
Length = 490
Score = 31.6 bits (70), Expect = 0.37
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 10 CCPSCPPCPPAPVHP----LIPPTPAHLVQV 36
CC CPPCP PV L PP P + +
Sbjct: 266 CCVECPPCPAPPVAGPSVFLFPPKPKDTLMI 296
>gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens]
Length = 358
Score = 31.2 bits (69), Expect = 0.48
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 4 AGVFIPCCPSCPPCPPAPVHPLIPPTPAHL 33
AG+F P PP PP P HP P PAHL
Sbjct: 176 AGLF----PYQPPPPPPPSHPHPHPPPAHL 201
>gi|40548415 dishevelled associated activator of morphogenesis 2
[Homo sapiens]
Length = 1067
Score = 31.2 bits (69), Expect = 0.48
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 21/76 (27%)
Query: 14 CPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRSPELSWPRAPRVEG 73
CPP PP P+ P PPTP LG + L P+ +P +
Sbjct: 552 CPPPPPPPLPPGGPPTPPGAPPCLG-----------------MGLPLPQDPYPSS----D 590
Query: 74 LPQSPQRVPKGVHPAR 89
+P +RVP+ HP +
Sbjct: 591 VPLRKKRVPQPSHPLK 606
>gi|7706589 GNAS complex locus NESP55 [Homo sapiens]
Length = 245
Score = 30.8 bits (68), Expect = 0.63
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 27 PPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRSPELSWPRAPRVEGLPQSPQ 79
P P H GQ + Q+L AL+LRSP+ S RAP PQSP+
Sbjct: 147 PVVPKH--STFGQSLTQRL--------HALKLRSPDASPSRAPPSTQEPQSPR 189
>gi|239752324 PREDICTED: hypothetical protein XP_002348199 [Homo
sapiens]
Length = 167
Score = 30.8 bits (68), Expect = 0.63
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 12 PSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRSPELSWPR--AP 69
P PPCPPA HP I ++ LG +V+ A ELRS + R
Sbjct: 6 PQPPPCPPA--HPSI------CLRCLGM-LVRGYQGGKTPGAGPQELRSEQYLGVRIQKS 56
Query: 70 RVEGLPQSPQRVPKGVHPARWGSAKLPFLLAVPLCLVALLLRNVQRRASPRGRARPGYTC 129
R G+ S R + V S++ LA P L+AL +R+ RASP G +R G C
Sbjct: 57 RDSGVGGSASRPKRAV-----TSSEARACLARPCQLMALSVRHC--RASPSG-SRTGSLC 108
Query: 130 QSQRAVGMMCK 140
++ + M+ +
Sbjct: 109 RATSSARMVSR 119
>gi|239746835 PREDICTED: hypothetical protein XP_002344235 [Homo
sapiens]
Length = 167
Score = 30.8 bits (68), Expect = 0.63
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 12 PSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRSPELSWPR--AP 69
P PPCPPA HP I ++ LG +V+ A ELRS + R
Sbjct: 6 PQPPPCPPA--HPSI------CLRCLGM-LVRGYQGGKTPGAGPQELRSEQYLGVRIQKS 56
Query: 70 RVEGLPQSPQRVPKGVHPARWGSAKLPFLLAVPLCLVALLLRNVQRRASPRGRARPGYTC 129
R G+ S R + V S++ LA P L+AL +R+ RASP G +R G C
Sbjct: 57 RDSGVGGSASRPKRAV-----TSSEARACLARPCQLMALSVRHC--RASPSG-SRTGSLC 108
Query: 130 QSQRAVGMMCK 140
++ + M+ +
Sbjct: 109 RATSSARMVSR 119
>gi|4503219 cytochrome P450, family 2, subfamily C, polypeptide 19
[Homo sapiens]
Length = 490
Score = 30.4 bits (67), Expect = 0.82
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 96 PFLLAVPLCLVALLLRNVQRRASPRGRARPGYT 128
PF++ V LCL LLL ++ R++S RG+ PG T
Sbjct: 3 PFVVLV-LCLSCLLLLSIWRQSSGRGKLPPGPT 34
>gi|110611914 progesterone receptor [Homo sapiens]
Length = 933
Score = 30.4 bits (67), Expect = 0.82
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 66 PRAPRVEGLPQSPQ-------RVPKGVHPARWGSAKLPFLLAVPLCLVALL 109
PRAP V G P SP+ R G P S LP + A+P+ L LL
Sbjct: 9 PRAPHVAGGPPSPEVGSPLLCRPAAGPFPGSQTSDTLPEVSAIPISLDGLL 59
>gi|169210554 PREDICTED: FLJ44904 protein [Homo sapiens]
Length = 196
Score = 30.4 bits (67), Expect = 0.82
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Query: 61 PELSWPRAPRVEGLPQSPQRVPKGVHPAR--------WGSAKL----PFLLAVPLCLVAL 108
P+ S P +PR P +P++ GVHP R WG A+ PFL + A
Sbjct: 88 PQHSSP-SPRHTTRPAAPRQALPGVHPLRRQVGEETCWGGAQAWAARPFLSLPCQAVPAP 146
Query: 109 LLRNVQRRASPRGRARPGYTCQSQRAVGMMCKLLWLLAPGPL 150
L +P R G C RAV ++ L W P P+
Sbjct: 147 TL----TPTTPPDPPRAGRKCNECRAVSLVL-LGWSQGPDPI 183
>gi|11067749 bromodomain containing protein 3 [Homo sapiens]
Length = 726
Score = 30.4 bits (67), Expect = 0.82
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 8 IPCCPSCPPCPPA-PVHPLIPPTP 30
+P P+ P PPA P+ P++PPTP
Sbjct: 211 VPVPPAAAPPPPATPIVPVVPPTP 234
>gi|148276998 zinc finger protein 628 [Homo sapiens]
Length = 1055
Score = 30.4 bits (67), Expect = 0.82
Identities = 43/151 (28%), Positives = 52/151 (34%), Gaps = 28/151 (18%)
Query: 12 PSCPPCPPAPVHPLIPPTPAHLVQVLGQCVVQKLLVFLQEAAQALELRSPELSWPRAPRV 71
P+ P PPAP+ P V VL L AQA P L P AP
Sbjct: 652 PAAGPQPPAPLAAARAPPATQDVHVLPHLQATLSLEVAGGTAQA-----PSLG-PAAPNS 705
Query: 72 EGL-----PQSPQRVPKGVHPARWGSAKLPFLLAVPLCLVALLLRNVQRRASPRGRARPG 126
+ Q Q +P V P P L+L + GRAR
Sbjct: 706 QTFLLVQTAQGLQLIPSSVQPPTPPPPPAP---------PKLILLPSSSAGAGGGRAR-- 754
Query: 127 YTCQSQRAVGMM---CKLLWLLAPGPLGQRG 154
Q RAVG ++WL PG LG +G
Sbjct: 755 ---QGPRAVGKAGQGAGVVWLPGPGGLGVQG 782
Score = 28.1 bits (61), Expect = 4.1
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 9 PCCPSCPPCPPAPVHPLIP-------PTPAHLVQVLGQC----VVQKLLVFLQEAAQALE 57
P P PP PP P P++P T LV C ++LL+ Q
Sbjct: 258 PHSPPAPPAPPPPPPPVVPELFLAAAETTVELVYRCDGCEQGFSSEELLLEHQPCPGPDA 317
Query: 58 LRSPELSWPRAPRVEGLPQS-PQRVPKGVHPARWGSAKLP 96
P+ + AP+ + P PQ P PA G A LP
Sbjct: 318 APQPQEAPAEAPKADQPPSPLPQPPPPAAAPAP-GFACLP 356
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 30.0 bits (66), Expect = 1.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 8 IPCCPSCPPCPPAPVHPLIPPTP 30
IP PS PP P P P+ PP P
Sbjct: 193 IPAMPSLPPMPSIPPIPVPPPVP 215
Score = 28.9 bits (63), Expect = 2.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 8 IPCCPSCPPCPPAPVHPLIPPTP 30
+P PS PP P P P +PP P
Sbjct: 199 LPPMPSIPPIPVPPPVPTLPPVP 221
Score = 28.9 bits (63), Expect = 2.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 8 IPCCPSCPPCPPAPVHPLIPPTPA 31
IP P P PP P P IPP P+
Sbjct: 208 IPVPPPVPTLPPVPPVPPIPPVPS 231
Score = 28.9 bits (63), Expect = 2.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 8 IPCCPSCPPCPPAPVHPLIPP 28
+P P PP PP P P +PP
Sbjct: 214 VPTLPPVPPVPPIPPVPSVPP 234
Score = 27.3 bits (59), Expect = 6.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 15 PPCPPAPVHPLIPPTPA 31
PP PP P P +PP P+
Sbjct: 188 PPIPPIPAMPSLPPMPS 204
Score = 27.3 bits (59), Expect = 6.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 9 PCCPSCPPCPPAPVHPLIPPTP 30
P P+ PP PP P P +P P
Sbjct: 212 PPVPTLPPVPPVPPIPPVPSVP 233
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 30.0 bits (66), Expect = 1.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 8 IPCCPSCPPCPPAPVHPLIPPTP 30
IP PS PP P P P+ PP P
Sbjct: 193 IPAMPSLPPMPSIPPIPVPPPVP 215
Score = 28.9 bits (63), Expect = 2.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 8 IPCCPSCPPCPPAPVHPLIPPTP 30
+P PS PP P P P +PP P
Sbjct: 199 LPPMPSIPPIPVPPPVPTLPPVP 221
Score = 28.9 bits (63), Expect = 2.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 8 IPCCPSCPPCPPAPVHPLIPPTPA 31
IP P P PP P P IPP P+
Sbjct: 208 IPVPPPVPTLPPVPPVPPIPPVPS 231
Score = 28.9 bits (63), Expect = 2.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 8 IPCCPSCPPCPPAPVHPLIPP 28
+P P PP PP P P +PP
Sbjct: 214 VPTLPPVPPVPPIPPVPSVPP 234
Score = 27.3 bits (59), Expect = 6.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 15 PPCPPAPVHPLIPPTPA 31
PP PP P P +PP P+
Sbjct: 188 PPIPPIPAMPSLPPMPS 204
Score = 27.3 bits (59), Expect = 6.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 9 PCCPSCPPCPPAPVHPLIPPTP 30
P P+ PP PP P P +P P
Sbjct: 212 PPVPTLPPVPPVPPIPPVPSVP 233
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.141 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,115,817
Number of Sequences: 37866
Number of extensions: 482754
Number of successful extensions: 5182
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 4585
Number of HSP's gapped (non-prelim): 591
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.