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Search of human proteins with 239749978
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749978 PREDICTED: hypothetical protein XP_002347247 [Homo
sapiens]
(388 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749978 PREDICTED: hypothetical protein XP_002347247 [Homo ... 799 0.0
gi|239744288 PREDICTED: hypothetical protein XP_002343112 [Homo ... 797 0.0
gi|13375926 vacuolar protein sorting 37B [Homo sapiens] 35 0.088
gi|186700625 Rab-like GTP-binding protein 1 isoform 2 [Homo sapi... 34 0.20
gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens] 33 0.33
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 32 0.97
gi|4757956 cadherin 16 precursor [Homo sapiens] 32 1.3
gi|4502739 cyclin-dependent kinase 5, regulatory subunit 2 [Homo... 32 1.3
gi|39725957 DAZ interacting protein 1 isoform 2 [Homo sapiens] 32 1.3
gi|7662436 DAZ interacting protein 1 isoform 1 [Homo sapiens] 32 1.3
gi|239754969 PREDICTED: hypothetical protein [Homo sapiens] 31 1.7
gi|169164295 PREDICTED: hypothetical protein [Homo sapiens] 31 1.7
gi|239749517 PREDICTED: hypothetical protein [Homo sapiens] 31 1.7
gi|239747902 PREDICTED: hypothetical protein [Homo sapiens] 31 1.7
gi|239743656 PREDICTED: hypothetical protein XP_002342923 [Homo ... 31 1.7
gi|239741797 PREDICTED: hypothetical protein [Homo sapiens] 31 1.7
gi|11034811 catenin (cadherin-associated protein), delta 2 (neur... 31 2.2
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 30 2.8
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 30 2.8
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 30 2.8
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 30 3.7
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 30 3.7
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 30 3.7
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 30 3.7
gi|146134388 YLP motif containing 1 [Homo sapiens] 30 3.7
gi|239757395 PREDICTED: hypothetical protein XP_002345270 [Homo ... 30 4.8
gi|239751893 PREDICTED: hypothetical protein XP_002348037 [Homo ... 30 4.8
gi|239750586 PREDICTED: hypothetical protein XP_002347439 [Homo ... 30 4.8
gi|239746383 PREDICTED: hypothetical protein XP_002343740 [Homo ... 30 4.8
gi|239744883 PREDICTED: hypothetical protein XP_002344274 [Homo ... 30 4.8
>gi|239749978 PREDICTED: hypothetical protein XP_002347247 [Homo
sapiens]
Length = 388
Score = 799 bits (2064), Expect = 0.0
Identities = 388/388 (100%), Positives = 388/388 (100%)
Query: 1 MPWQPRPSLPLAAGTCSPVHAVADPGITDSRAMPRVPPPAPLLGFSETHLHAASRGSRVH 60
MPWQPRPSLPLAAGTCSPVHAVADPGITDSRAMPRVPPPAPLLGFSETHLHAASRGSRVH
Sbjct: 1 MPWQPRPSLPLAAGTCSPVHAVADPGITDSRAMPRVPPPAPLLGFSETHLHAASRGSRVH 60
Query: 61 RPGPEDWRLPPRLGALRISPTSGSVDGAHEIEKYRGTRYVCISKEFMVHAESGINDHNSS 120
RPGPEDWRLPPRLGALRISPTSGSVDGAHEIEKYRGTRYVCISKEFMVHAESGINDHNSS
Sbjct: 61 RPGPEDWRLPPRLGALRISPTSGSVDGAHEIEKYRGTRYVCISKEFMVHAESGINDHNSS 120
Query: 121 LHAEHVSSTVLPALYTRKHYVEQQICFPTAVKTAHDVFAEMITTSIAGLALINICNRKAL 180
LHAEHVSSTVLPALYTRKHYVEQQICFPTAVKTAHDVFAEMITTSIAGLALINICNRKAL
Sbjct: 121 LHAEHVSSTVLPALYTRKHYVEQQICFPTAVKTAHDVFAEMITTSIAGLALINICNRKAL 180
Query: 181 GISESNTCLISHNSLKGHCRHGPSLHNRASSLPGEVKATFTCLPIQLESESNRTTAVDTC 240
GISESNTCLISHNSLKGHCRHGPSLHNRASSLPGEVKATFTCLPIQLESESNRTTAVDTC
Sbjct: 181 GISESNTCLISHNSLKGHCRHGPSLHNRASSLPGEVKATFTCLPIQLESESNRTTAVDTC 240
Query: 241 RSILTGAVTASIVDSTRFWQGGAHPPAPFSNCSLKDYEMLRVSPRRWSFVTTIVVQELRP 300
RSILTGAVTASIVDSTRFWQGGAHPPAPFSNCSLKDYEMLRVSPRRWSFVTTIVVQELRP
Sbjct: 241 RSILTGAVTASIVDSTRFWQGGAHPPAPFSNCSLKDYEMLRVSPRRWSFVTTIVVQELRP 300
Query: 301 DGVGHPFTHSLNTSPCHEVVLLSWATEGSLWNTTVPMAGVHWPILTDAVSLVLGQLKTRP 360
DGVGHPFTHSLNTSPCHEVVLLSWATEGSLWNTTVPMAGVHWPILTDAVSLVLGQLKTRP
Sbjct: 301 DGVGHPFTHSLNTSPCHEVVLLSWATEGSLWNTTVPMAGVHWPILTDAVSLVLGQLKTRP 360
Query: 361 ALTGDAAPWGLLADVTTAVILIHAAQAL 388
ALTGDAAPWGLLADVTTAVILIHAAQAL
Sbjct: 361 ALTGDAAPWGLLADVTTAVILIHAAQAL 388
>gi|239744288 PREDICTED: hypothetical protein XP_002343112 [Homo
sapiens]
Length = 388
Score = 797 bits (2059), Expect = 0.0
Identities = 387/388 (99%), Positives = 387/388 (99%)
Query: 1 MPWQPRPSLPLAAGTCSPVHAVADPGITDSRAMPRVPPPAPLLGFSETHLHAASRGSRVH 60
MPWQPRPSLPLAAGTCSPVHAVADPGITDSRAMPRVPPPAPLLGFSETHLHAASRGSRVH
Sbjct: 1 MPWQPRPSLPLAAGTCSPVHAVADPGITDSRAMPRVPPPAPLLGFSETHLHAASRGSRVH 60
Query: 61 RPGPEDWRLPPRLGALRISPTSGSVDGAHEIEKYRGTRYVCISKEFMVHAESGINDHNSS 120
RPGPEDWRLPPRLGALRISPTSGSVDGAHEIEKYRGTRYVCISKEFMVHAESGINDHNSS
Sbjct: 61 RPGPEDWRLPPRLGALRISPTSGSVDGAHEIEKYRGTRYVCISKEFMVHAESGINDHNSS 120
Query: 121 LHAEHVSSTVLPALYTRKHYVEQQICFPTAVKTAHDVFAEMITTSIAGLALINICNRKAL 180
LHAEHVSSTVLPALYTRKHYVEQQICFPTAVKTAHDVFAEMITTSIAGLALINICNRKAL
Sbjct: 121 LHAEHVSSTVLPALYTRKHYVEQQICFPTAVKTAHDVFAEMITTSIAGLALINICNRKAL 180
Query: 181 GISESNTCLISHNSLKGHCRHGPSLHNRASSLPGEVKATFTCLPIQLESESNRTTAVDTC 240
GISESNTCLISHNSLKGHCRHGPSLHNRA SLPGEVKATFTCLPIQLESESNRTTAVDTC
Sbjct: 181 GISESNTCLISHNSLKGHCRHGPSLHNRAPSLPGEVKATFTCLPIQLESESNRTTAVDTC 240
Query: 241 RSILTGAVTASIVDSTRFWQGGAHPPAPFSNCSLKDYEMLRVSPRRWSFVTTIVVQELRP 300
RSILTGAVTASIVDSTRFWQGGAHPPAPFSNCSLKDYEMLRVSPRRWSFVTTIVVQELRP
Sbjct: 241 RSILTGAVTASIVDSTRFWQGGAHPPAPFSNCSLKDYEMLRVSPRRWSFVTTIVVQELRP 300
Query: 301 DGVGHPFTHSLNTSPCHEVVLLSWATEGSLWNTTVPMAGVHWPILTDAVSLVLGQLKTRP 360
DGVGHPFTHSLNTSPCHEVVLLSWATEGSLWNTTVPMAGVHWPILTDAVSLVLGQLKTRP
Sbjct: 301 DGVGHPFTHSLNTSPCHEVVLLSWATEGSLWNTTVPMAGVHWPILTDAVSLVLGQLKTRP 360
Query: 361 ALTGDAAPWGLLADVTTAVILIHAAQAL 388
ALTGDAAPWGLLADVTTAVILIHAAQAL
Sbjct: 361 ALTGDAAPWGLLADVTTAVILIHAAQAL 388
>gi|13375926 vacuolar protein sorting 37B [Homo sapiens]
Length = 285
Score = 35.4 bits (80), Expect = 0.088
Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 2 PWQPR-PSLPLAAGTCSPVHAVADPGITDSRAMPRVPPPAPLLGFSETHLHAASRGSRVH 60
P PR P L A P + P R +P PPP P + A S G V
Sbjct: 175 PLPPRLPELAPTAPLPYPAPEASGPPAVAPRRIPPPPPPVPAGRLATPFTAAMSSGQAVP 234
Query: 61 RPGPEDWRLPPRLG 74
PG + LPPR+G
Sbjct: 235 YPGLQCPPLPPRVG 248
>gi|186700625 Rab-like GTP-binding protein 1 isoform 2 [Homo
sapiens]
Length = 520
Score = 34.3 bits (77), Expect = 0.20
Identities = 30/86 (34%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 4 QPRPSLPLAAGTCSPVHAVADPGITDSRAMPRVPPPAPLLGFSETHLHAASRGSRVHRPG 63
QP P LPL A S V P + S A+P PP P A R S + RP
Sbjct: 318 QPAPQLPLNAAPPSSV-----PPVPPSEALP--PPACPSA--------PAPRRSIISRPP 362
Query: 64 PEDWRLPPRLGALRISPTSGSVDGAH 89
P WRL LG P G H
Sbjct: 363 PWGWRLRGALGRRGQWPPWGGGRACH 388
>gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 1215
Score = 33.5 bits (75), Expect = 0.33
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 14/93 (15%)
Query: 2 PWQPRPSLPLAAGTCSPVHAVADPGITDSRAMPRVPPPAPLLGFSETHLHAASR---GSR 58
P P+ LPL+ + P+H + D +P VP P G + LH R G+R
Sbjct: 415 PHSPQLLLPLSVDSEGPLHQLPDLWARFPAVLPWVPSPGK--GTAHARLHFRXRPAEGAR 472
Query: 59 VHRPG----PEDWRLPPRLGALRISPTSGSVDG 87
HR G P+ W + +L +PTS G
Sbjct: 473 RHRCGAEAAPQTWGVQGQL-----TPTSTRAPG 500
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 32.0 bits (71), Expect = 0.97
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 14/76 (18%)
Query: 5 PRPSLPLAAGTCSPVHAVADPGITDSRAMP----RVPPPAPLLG----FSETHLHAASRG 56
P P+ P+A G A P DS+A P ++P APL G S + H A G
Sbjct: 733 PAPATPVAKG------AGLGPQAPDSQASPAPAPQIPAAAPLKGPGPSSSPSLPHQAPLG 786
Query: 57 SRVHRPGPEDWRLPPR 72
H P P R P R
Sbjct: 787 DSPHLPSPHPTRPPSR 802
>gi|4757956 cadherin 16 precursor [Homo sapiens]
Length = 829
Score = 31.6 bits (70), Expect = 1.3
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 46 SETHLHAASRGSRVHRPGPEDWRLPPRLGALRISPTSGSVDGAHEIEK 93
S+ H S+ +P P+ ++L PRLGAL +SP GS H +E+
Sbjct: 161 SDLRFHILSQAPA--QPSPDMFQLEPRLGALALSP-KGSTSLDHALER 205
>gi|4502739 cyclin-dependent kinase 5, regulatory subunit 2 [Homo
sapiens]
Length = 367
Score = 31.6 bits (70), Expect = 1.3
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 5 PRPSLPLAAGTCSPV---HAVADPGITDSRAMPRVPPPAP 41
P P++P AA TC P A A P + P PPPAP
Sbjct: 124 PVPTVPAAAATCEPPSGGSAAAQPPGSGGGKPPPPPPPAP 163
>gi|39725957 DAZ interacting protein 1 isoform 2 [Homo sapiens]
Length = 867
Score = 31.6 bits (70), Expect = 1.3
Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 22/120 (18%)
Query: 1 MPWQPRPSLPLAAGTCSPVHAVADPGITDSRAMPRVPPPA---PLLGFSETHLHAASRGS 57
MP+Q PLA+G P AVA + +M PP A PL F
Sbjct: 12 MPFQKHVYYPLASGPEGPDVAVA-AAAAGAASMACAPPSAASGPLPFFQ----------- 59
Query: 58 RVHRPGPE--DWRLPPRLGALRISPTSGSVDGAHEIEKYRGTRYVCISKEFMVHAESGIN 115
RP E DWR RL A+ + +G+VD E + + E H +SG++
Sbjct: 60 --FRPRLESVDWR---RLSAIDVDKVAGAVDVLTLQENIMNITFCKLEDEKCPHCQSGVD 114
>gi|7662436 DAZ interacting protein 1 isoform 1 [Homo sapiens]
Length = 848
Score = 31.6 bits (70), Expect = 1.3
Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 22/120 (18%)
Query: 1 MPWQPRPSLPLAAGTCSPVHAVADPGITDSRAMPRVPPPA---PLLGFSETHLHAASRGS 57
MP+Q PLA+G P AVA + +M PP A PL F
Sbjct: 12 MPFQKHVYYPLASGPEGPDVAVA-AAAAGAASMACAPPSAASGPLPFFQ----------- 59
Query: 58 RVHRPGPE--DWRLPPRLGALRISPTSGSVDGAHEIEKYRGTRYVCISKEFMVHAESGIN 115
RP E DWR RL A+ + +G+VD E + + E H +SG++
Sbjct: 60 --FRPRLESVDWR---RLSAIDVDKVAGAVDVLTLQENIMNITFCKLEDEKCPHCQSGVD 114
>gi|239754969 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 31.2 bits (69), Expect = 1.7
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 7 PSLPLAAGTCSPVHAVADPGITDSRAMPRVPPPAPLLGFSETHLHAASRGSRVHRPGPED 66
P++P A G P + PG ++ PPAPLL T + GS H P P+
Sbjct: 5 PAIP-AQGQKPPQLLLPFPGSRPLLSLQPSTPPAPLLFLGATGSSWNTPGSPRHTPHPDM 63
Query: 67 WRLPPRLGALRISPTSGSVDG 87
P GA + +S DG
Sbjct: 64 QTRAPWHGAAQAHLSSAEGDG 84
>gi|169164295 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 31.2 bits (69), Expect = 1.7
Identities = 25/81 (30%), Positives = 34/81 (41%)
Query: 195 LKGHCRHGPSLHNRASSLPGEVKATFTCLPIQLESESNRTTAVDTCRSILTGAVTASIVD 254
L+ CR GP + SSLP A + LP + E++ D R +LT A A
Sbjct: 111 LRRTCRQGPVGPHSPSSLPRRSPAQGSVLPGPGKEETHFRRVHDLPRLLLTLAAGAGAGH 170
Query: 255 STRFWQGGAHPPAPFSNCSLK 275
G HPP+ S L+
Sbjct: 171 RDTELGSGHHPPSQASPFQLR 191
>gi|239749517 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 31.2 bits (69), Expect = 1.7
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 7 PSLPLAAGTCSPVHAVADPGITDSRAMPRVPPPAPLLGFSETHLHAASRGSRVHRPGPED 66
P++P A G P + PG ++ PPAPLL T + GS H P P+
Sbjct: 5 PAIP-AQGQKPPQLLLPFPGSRPLLSLQPSTPPAPLLFLGATGSSWNTPGSPRHTPHPDM 63
Query: 67 WRLPPRLGALRISPTSGSVDG 87
P GA + +S DG
Sbjct: 64 QTRAPWHGAAQAHLSSAEGDG 84
>gi|239747902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 31.2 bits (69), Expect = 1.7
Identities = 25/81 (30%), Positives = 34/81 (41%)
Query: 195 LKGHCRHGPSLHNRASSLPGEVKATFTCLPIQLESESNRTTAVDTCRSILTGAVTASIVD 254
L+ CR GP + SSLP A + LP + E++ D R +LT A A
Sbjct: 111 LRRTCRQGPVGPHSPSSLPRRSPAQGSVLPGPGKEETHFRRVHDLPRLLLTLAAGAGAGH 170
Query: 255 STRFWQGGAHPPAPFSNCSLK 275
G HPP+ S L+
Sbjct: 171 RDTELGSGHHPPSQASPFQLR 191
>gi|239743656 PREDICTED: hypothetical protein XP_002342923 [Homo
sapiens]
Length = 184
Score = 31.2 bits (69), Expect = 1.7
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 7 PSLPLAAGTCSPVHAVADPGITDSRAMPRVPPPAPLLGFSETHLHAASRGSRVHRPGPED 66
P++P A G P + PG ++ PPAPLL T + GS H P P+
Sbjct: 5 PAIP-AQGQKPPQLLLPFPGSRPLLSLQPSTPPAPLLFLGATGSSWNTPGSPRHTPHPDM 63
Query: 67 WRLPPRLGALRISPTSGSVDG 87
P GA + +S DG
Sbjct: 64 QTRAPWHGAAQAHLSSAEGDG 84
>gi|239741797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 31.2 bits (69), Expect = 1.7
Identities = 25/81 (30%), Positives = 34/81 (41%)
Query: 195 LKGHCRHGPSLHNRASSLPGEVKATFTCLPIQLESESNRTTAVDTCRSILTGAVTASIVD 254
L+ CR GP + SSLP A + LP + E++ D R +LT A A
Sbjct: 111 LRRTCRQGPVGPHSPSSLPRRSPAQGSVLPGPGKEETHFRRVHDLPRLLLTLAAGAGAGH 170
Query: 255 STRFWQGGAHPPAPFSNCSLK 275
G HPP+ S L+
Sbjct: 171 RDTELGSGHHPPSQASPFQLR 191
>gi|11034811 catenin (cadherin-associated protein), delta 2 (neural
plakophilin-related arm-repeat protein) [Homo sapiens]
Length = 1225
Score = 30.8 bits (68), Expect = 2.2
Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 7/101 (6%)
Query: 44 GFSETHLHAASRGSRVHRPGPEDWRLPPRLGALRISPTSGSVDGAHEIE-----KYRGTR 98
G+S+ H A+S R P P + +R+SP + S K R T
Sbjct: 1030 GWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREMISLKERKTD 1089
Query: 99 YVCISKEFMVHAESGINDHNSSLHAEHVSSTVLPALYTRKH 139
Y C H G +H S A +T + LY +
Sbjct: 1090 YECTGSNATYHGAKG--EHTSRKDAMTAQNTGISTLYRNSY 1128
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 30.4 bits (67), Expect = 2.8
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 10 PLAAGTCSPVHAVADPGITDSRAMPRVPPPA-----PLLGFSETHLHAASRGSRVHRPGP 64
PL G+ PVH + DP +T + R P P PLLG H H R P P
Sbjct: 889 PLHQGSAGPVHPLVDP-LTAGPHLARFPYPPGTLPNPLLG-QPPHEHEMLRHPVFGTPYP 946
Query: 65 ED--WRLPPRLGA 75
D +PP + A
Sbjct: 947 RDLPGAIPPPMSA 959
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 30.4 bits (67), Expect = 2.8
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 10 PLAAGTCSPVHAVADPGITDSRAMPRVPPPA-----PLLGFSETHLHAASRGSRVHRPGP 64
PL G+ PVH + DP +T + R P P PLLG H H R P P
Sbjct: 1443 PLHQGSAGPVHPLVDP-LTAGPHLARFPYPPGTLPNPLLG-QPPHEHEMLRHPVFGTPYP 1500
Query: 65 ED--WRLPPRLGA 75
D +PP + A
Sbjct: 1501 RDLPGAIPPPMSA 1513
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 30.4 bits (67), Expect = 2.8
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 10 PLAAGTCSPVHAVADPGITDSRAMPRVPPPA-----PLLGFSETHLHAASRGSRVHRPGP 64
PL G+ PVH + DP +T + R P P PLLG H H R P P
Sbjct: 1443 PLHQGSAGPVHPLVDP-LTAGPHLARFPYPPGTLPNPLLG-QPPHEHEMLRHPVFGTPYP 1500
Query: 65 ED--WRLPPRLGA 75
D +PP + A
Sbjct: 1501 RDLPGAIPPPMSA 1513
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 30.0 bits (66), Expect = 3.7
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 2 PWQPRPSLPL---AAGTCSPV----HAVADPGITDSRAMPRVPPPAPLLGFSETHLHAAS 54
P QP P P+ A SP +A PG T AM R PPPAP G + A++
Sbjct: 940 PPQPLPEEPMEVQGAERASPEPQRENASPAPGTTAEEAMSRGPPPAPEGGSRDEQDGASA 999
Query: 55 RGSRVHRPGPEDW 67
P +W
Sbjct: 1000 ETEPWAAAVPPEW 1012
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 30.0 bits (66), Expect = 3.7
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 2 PWQPRPSLPL---AAGTCSPV----HAVADPGITDSRAMPRVPPPAPLLGFSETHLHAAS 54
P QP P P+ A SP +A PG T AM R PPPAP G + A++
Sbjct: 940 PPQPLPEEPMEVQGAERASPEPQRENASPAPGTTAEEAMSRGPPPAPEGGSRDEQDGASA 999
Query: 55 RGSRVHRPGPEDW 67
P +W
Sbjct: 1000 ETEPWAAAVPPEW 1012
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 30.0 bits (66), Expect = 3.7
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 2 PWQPRPSLPL---AAGTCSPV----HAVADPGITDSRAMPRVPPPAPLLGFSETHLHAAS 54
P QP P P+ A SP +A PG T AM R PPPAP G + A++
Sbjct: 940 PPQPLPEEPMEVQGAERASPEPQRENASPAPGTTAEEAMSRGPPPAPEGGSRDEQDGASA 999
Query: 55 RGSRVHRPGPEDW 67
P +W
Sbjct: 1000 ETEPWAAAVPPEW 1012
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 30.0 bits (66), Expect = 3.7
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 2 PWQPRPSLPL---AAGTCSPV----HAVADPGITDSRAMPRVPPPAPLLGFSETHLHAAS 54
P QP P P+ A SP +A PG T AM R PPPAP G + A++
Sbjct: 946 PPQPLPEEPMEVQGAERASPEPQRENASPAPGTTAEEAMSRGPPPAPEGGSRDEQDGASA 1005
Query: 55 RGSRVHRPGPEDW 67
P +W
Sbjct: 1006 ETEPWAAAVPPEW 1018
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 30.0 bits (66), Expect = 3.7
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 5 PRPSLPLAAGTCSPVHAVADPGITDSRAMPRVPPP-----APLLGFSETHLHAASRGSRV 59
P P +P + + P + P ++ + P +PPP AP L +A+ +
Sbjct: 574 PPPGMPPSLSSAGPPPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVMPLPPLSSATPPPGI 633
Query: 60 HRPGPEDWRLPPRLGALRISPTSGS 84
PG +PP+L A + P S S
Sbjct: 634 PPPGVPQ-GIPPQLTAAPVPPASSS 657
>gi|239757395 PREDICTED: hypothetical protein XP_002345270 [Homo
sapiens]
Length = 399
Score = 29.6 bits (65), Expect = 4.8
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 283 SPRRWS--FVTTIVVQELRPDGVGHPFTHSLNTSPCHEVVLLSWATEGSLWNTTVPMAGV 340
SP W+ V+ +V+++ R HP + TSP + + L++W + +T + M +
Sbjct: 335 SPSAWTHPIVSGLVLEKARAICT-HPIGRQVGTSPHNSIQLMAW-----IQDTKLEMTSI 388
Query: 341 HWPI 344
H P+
Sbjct: 389 HCPL 392
>gi|239751893 PREDICTED: hypothetical protein XP_002348037 [Homo
sapiens]
Length = 521
Score = 29.6 bits (65), Expect = 4.8
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 283 SPRRWS--FVTTIVVQELRPDGVGHPFTHSLNTSPCHEVVLLSWATEGSLWNTTVPMAGV 340
SP W+ V+ +V+++ R HP + TSP + + L++W + +T + M +
Sbjct: 457 SPSAWTHPIVSGLVLEKARAICT-HPIGRQVGTSPHNSIQLMAW-----IQDTKLEMTSI 510
Query: 341 HWPI 344
H P+
Sbjct: 511 HCPL 514
>gi|239750586 PREDICTED: hypothetical protein XP_002347439 [Homo
sapiens]
Length = 300
Score = 29.6 bits (65), Expect = 4.8
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 177 RKALGISESNTCLISHNSLKGHCRHGPSLHNRASSLPGEVKATFTCLPIQLESESNRTTA 236
++ I ESN + H+S++ C P+ NRA ++ T +P + N +
Sbjct: 217 QQCTSIPESNRACVHHSSIRQQCTSIPA-SNRACVHHSSIRQQCTSIPASKRASGNIPVS 275
Query: 237 VDTC 240
TC
Sbjct: 276 SGTC 279
>gi|239746383 PREDICTED: hypothetical protein XP_002343740 [Homo
sapiens]
Length = 521
Score = 29.6 bits (65), Expect = 4.8
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 283 SPRRWS--FVTTIVVQELRPDGVGHPFTHSLNTSPCHEVVLLSWATEGSLWNTTVPMAGV 340
SP W+ V+ +V+++ R HP + TSP + + L++W + +T + M +
Sbjct: 457 SPSAWTHPIVSGLVLEKARAICT-HPIGRQVGTSPHNSIQLMAW-----IQDTKLEMTSI 510
Query: 341 HWPI 344
H P+
Sbjct: 511 HCPL 514
>gi|239744883 PREDICTED: hypothetical protein XP_002344274 [Homo
sapiens]
Length = 300
Score = 29.6 bits (65), Expect = 4.8
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 177 RKALGISESNTCLISHNSLKGHCRHGPSLHNRASSLPGEVKATFTCLPIQLESESNRTTA 236
++ I ESN + H+S++ C P+ NRA ++ T +P + N +
Sbjct: 217 QQCTSIPESNRACVHHSSIRQQCTSIPA-SNRACVHHSSIRQQCTSIPASKRASGNIPVS 275
Query: 237 VDTC 240
TC
Sbjct: 276 SGTC 279
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,550,683
Number of Sequences: 37866
Number of extensions: 798450
Number of successful extensions: 2321
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 2294
Number of HSP's gapped (non-prelim): 64
length of query: 388
length of database: 18,247,518
effective HSP length: 104
effective length of query: 284
effective length of database: 14,309,454
effective search space: 4063884936
effective search space used: 4063884936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.