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Search of human proteins with 239749833
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749833 PREDICTED: hypothetical protein XP_002347172 [Homo
sapiens]
(302 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749833 PREDICTED: hypothetical protein XP_002347172 [Homo ... 618 e-177
gi|239744123 PREDICTED: hypothetical protein XP_002343065 [Homo ... 618 e-177
gi|239755335 PREDICTED: hypothetical protein [Homo sapiens] 617 e-177
gi|239753242 PREDICTED: hypothetical protein XP_002345593 [Homo ... 35 0.062
gi|239747801 PREDICTED: hypothetical protein XP_002348317 [Homo ... 35 0.062
gi|239741675 PREDICTED: hypothetical protein XP_002342283 [Homo ... 35 0.062
gi|5454102 transforming, acidic coiled-coil containing protein 3... 34 0.18
gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 ... 32 0.69
gi|148276998 zinc finger protein 628 [Homo sapiens] 32 0.69
gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax ... 32 0.90
gi|156416026 zinc finger protein 219 [Homo sapiens] 31 1.5
gi|156415998 zinc finger protein 219 [Homo sapiens] 31 1.5
gi|98991767 mitogen-activated protein kinase kinase kinase 7 int... 31 1.5
gi|156415996 zinc finger protein 219 [Homo sapiens] 31 1.5
gi|40288203 hypothetical protein LOC219287 isoform 1 [Homo sapiens] 31 1.5
gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens] 30 2.0
gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ... 30 2.0
gi|118918405 SAC3 domain containing 1 [Homo sapiens] 30 2.0
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 30 2.0
gi|156766050 AHNAK nucleoprotein 2 [Homo sapiens] 30 2.0
gi|48762934 alpha 2 type I collagen [Homo sapiens] 30 2.6
gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo ... 30 2.6
gi|9945318 MAX binding protein [Homo sapiens] 30 2.6
gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens] 30 2.6
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 30 3.4
gi|223941923 OTU domain containing 1 [Homo sapiens] 30 3.4
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 30 3.4
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 30 3.4
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 30 3.4
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 30 3.4
>gi|239749833 PREDICTED: hypothetical protein XP_002347172 [Homo
sapiens]
Length = 302
Score = 618 bits (1594), Expect = e-177
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MASTSVMFSQIMRKARTSVAERLTPMAQCTSTRPCTLGNTEGSSDVSSNRQKVDTEVEEG 60
MASTSVMFSQIMRKARTSVAERLTPMAQCTSTRPCTLGNTEGSSDVSSNRQKVDTEVEEG
Sbjct: 1 MASTSVMFSQIMRKARTSVAERLTPMAQCTSTRPCTLGNTEGSSDVSSNRQKVDTEVEEG 60
Query: 61 VVVRLDAIVLQGHSTVEFGTCVHLELACSGIHNVGDSQLDQLALVPGCEEAGPDLIDMVQ 120
VVVRLDAIVLQGHSTVEFGTCVHLELACSGIHNVGDSQLDQLALVPGCEEAGPDLIDMVQ
Sbjct: 61 VVVRLDAIVLQGHSTVEFGTCVHLELACSGIHNVGDSQLDQLALVPGCEEAGPDLIDMVQ 120
Query: 121 CGSLTDPQQALQRSQCGRLVGRCLDCPMDLGPPEVLLLHLDFVGMKAPDGCGSQGTQEAP 180
CGSLTDPQQALQRSQCGRLVGRCLDCPMDLGPPEVLLLHLDFVGMKAPDGCGSQGTQEAP
Sbjct: 121 CGSLTDPQQALQRSQCGRLVGRCLDCPMDLGPPEVLLLHLDFVGMKAPDGCGSQGTQEAP 180
Query: 181 TNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNLGSLAKKPEGLAERGAHSHLW 240
TNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNLGSLAKKPEGLAERGAHSHLW
Sbjct: 181 TNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNLGSLAKKPEGLAERGAHSHLW 240
Query: 241 RLKTVAERGCRRQEEPDGVAGSRADPTLGFHHLLCVRLGQSLQQHQQDQCQGGKVAEPHG 300
RLKTVAERGCRRQEEPDGVAGSRADPTLGFHHLLCVRLGQSLQQHQQDQCQGGKVAEPHG
Sbjct: 241 RLKTVAERGCRRQEEPDGVAGSRADPTLGFHHLLCVRLGQSLQQHQQDQCQGGKVAEPHG 300
Query: 301 RE 302
RE
Sbjct: 301 RE 302
>gi|239744123 PREDICTED: hypothetical protein XP_002343065 [Homo
sapiens]
Length = 302
Score = 618 bits (1594), Expect = e-177
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MASTSVMFSQIMRKARTSVAERLTPMAQCTSTRPCTLGNTEGSSDVSSNRQKVDTEVEEG 60
MASTSVMFSQIMRKARTSVAERLTPMAQCTSTRPCTLGNTEGSSDVSSNRQKVDTEVEEG
Sbjct: 1 MASTSVMFSQIMRKARTSVAERLTPMAQCTSTRPCTLGNTEGSSDVSSNRQKVDTEVEEG 60
Query: 61 VVVRLDAIVLQGHSTVEFGTCVHLELACSGIHNVGDSQLDQLALVPGCEEAGPDLIDMVQ 120
VVVRLDAIVLQGHSTVEFGTCVHLELACSGIHNVGDSQLDQLALVPGCEEAGPDLIDMVQ
Sbjct: 61 VVVRLDAIVLQGHSTVEFGTCVHLELACSGIHNVGDSQLDQLALVPGCEEAGPDLIDMVQ 120
Query: 121 CGSLTDPQQALQRSQCGRLVGRCLDCPMDLGPPEVLLLHLDFVGMKAPDGCGSQGTQEAP 180
CGSLTDPQQALQRSQCGRLVGRCLDCPMDLGPPEVLLLHLDFVGMKAPDGCGSQGTQEAP
Sbjct: 121 CGSLTDPQQALQRSQCGRLVGRCLDCPMDLGPPEVLLLHLDFVGMKAPDGCGSQGTQEAP 180
Query: 181 TNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNLGSLAKKPEGLAERGAHSHLW 240
TNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNLGSLAKKPEGLAERGAHSHLW
Sbjct: 181 TNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNLGSLAKKPEGLAERGAHSHLW 240
Query: 241 RLKTVAERGCRRQEEPDGVAGSRADPTLGFHHLLCVRLGQSLQQHQQDQCQGGKVAEPHG 300
RLKTVAERGCRRQEEPDGVAGSRADPTLGFHHLLCVRLGQSLQQHQQDQCQGGKVAEPHG
Sbjct: 241 RLKTVAERGCRRQEEPDGVAGSRADPTLGFHHLLCVRLGQSLQQHQQDQCQGGKVAEPHG 300
Query: 301 RE 302
RE
Sbjct: 301 RE 302
>gi|239755335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 515
Score = 617 bits (1591), Expect = e-177
Identities = 301/302 (99%), Positives = 302/302 (100%)
Query: 1 MASTSVMFSQIMRKARTSVAERLTPMAQCTSTRPCTLGNTEGSSDVSSNRQKVDTEVEEG 60
MASTSVMFSQIMRKARTSVAERLTPMAQCTSTRPCTLGNTEGSSDVSSNRQKVDTEVEEG
Sbjct: 1 MASTSVMFSQIMRKARTSVAERLTPMAQCTSTRPCTLGNTEGSSDVSSNRQKVDTEVEEG 60
Query: 61 VVVRLDAIVLQGHSTVEFGTCVHLELACSGIHNVGDSQLDQLALVPGCEEAGPDLIDMVQ 120
VVVRLDAIVLQGHSTVEFGTCVHLELACSGIHNVGDSQLDQLALVPGCEEAGPDLIDMVQ
Sbjct: 61 VVVRLDAIVLQGHSTVEFGTCVHLELACSGIHNVGDSQLDQLALVPGCEEAGPDLIDMVQ 120
Query: 121 CGSLTDPQQALQRSQCGRLVGRCLDCPMDLGPPEVLLLHLDFVGMKAPDGCGSQGTQEAP 180
CGSLTDPQQALQRSQCGRLVGRCLDCPMDLGPPEVLLLHLDFVGMKAPDGCGSQGTQEAP
Sbjct: 121 CGSLTDPQQALQRSQCGRLVGRCLDCPMDLGPPEVLLLHLDFVGMKAPDGCGSQGTQEAP 180
Query: 181 TNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNLGSLAKKPEGLAERGAHSHLW 240
TNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNLGSLAKKPEGLAERGAHSHLW
Sbjct: 181 TNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNLGSLAKKPEGLAERGAHSHLW 240
Query: 241 RLKTVAERGCRRQEEPDGVAGSRADPTLGFHHLLCVRLGQSLQQHQQDQCQGGKVAEPHG 300
RLKTVAERGCRRQEEPDGVAGSRADPTLGFHHLLCVRLGQSLQQHQQDQCQGGKVAEPHG
Sbjct: 241 RLKTVAERGCRRQEEPDGVAGSRADPTLGFHHLLCVRLGQSLQQHQQDQCQGGKVAEPHG 300
Query: 301 RE 302
R+
Sbjct: 301 RD 302
>gi|239753242 PREDICTED: hypothetical protein XP_002345593 [Homo
sapiens]
Length = 115
Score = 35.4 bits (80), Expect = 0.062
Identities = 28/87 (32%), Positives = 39/87 (44%)
Query: 2 ASTSVMFSQIMRKARTSVAERLTPMAQCTSTRPCTLGNTEGSSDVSSNRQKVDTEVEEGV 61
AS+S MR AR VAER P QCTSTRP ++ + + T++ V
Sbjct: 19 ASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPLTNEAYGLLEPGTDLHHLV 78
Query: 62 VVRLDAIVLQGHSTVEFGTCVHLELAC 88
V+ D +V + V H+E C
Sbjct: 79 VLHRDTLVAEKALKVVGAAGGHVEDGC 105
>gi|239747801 PREDICTED: hypothetical protein XP_002348317 [Homo
sapiens]
Length = 115
Score = 35.4 bits (80), Expect = 0.062
Identities = 28/87 (32%), Positives = 39/87 (44%)
Query: 2 ASTSVMFSQIMRKARTSVAERLTPMAQCTSTRPCTLGNTEGSSDVSSNRQKVDTEVEEGV 61
AS+S MR AR VAER P QCTSTRP ++ + + T++ V
Sbjct: 19 ASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPLTNEAYGLLEPGTDLHHLV 78
Query: 62 VVRLDAIVLQGHSTVEFGTCVHLELAC 88
V+ D +V + V H+E C
Sbjct: 79 VLHRDTLVAEKALKVVGAAGGHVEDGC 105
>gi|239741675 PREDICTED: hypothetical protein XP_002342283 [Homo
sapiens]
Length = 115
Score = 35.4 bits (80), Expect = 0.062
Identities = 28/87 (32%), Positives = 39/87 (44%)
Query: 2 ASTSVMFSQIMRKARTSVAERLTPMAQCTSTRPCTLGNTEGSSDVSSNRQKVDTEVEEGV 61
AS+S MR AR VAER P QCTSTRP ++ + + T++ V
Sbjct: 19 ASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPLTNEAYGLLEPGTDLHHLV 78
Query: 62 VVRLDAIVLQGHSTVEFGTCVHLELAC 88
V+ D +V + V H+E C
Sbjct: 79 VLHRDTLVAEKALKVVGAAGGHVEDGC 105
>gi|5454102 transforming, acidic coiled-coil containing protein 3
[Homo sapiens]
Length = 838
Score = 33.9 bits (76), Expect = 0.18
Identities = 44/170 (25%), Positives = 61/170 (35%), Gaps = 34/170 (20%)
Query: 125 TDPQQALQRSQCGR-----LVGRCLDCPMDLGPPEVL--LLHLDFVGMKAPDGCGSQGTQ 177
T P A+ + CG L G L CP +G P L AP+
Sbjct: 249 TSPPGAIPKEACGGAPLQGLPGEALGCPAGVGTPVPADGTQTLTCAHTSAPE-------S 301
Query: 178 EAPTN---------LSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNLGSLAKKPE 228
APTN LS + + +S+ PV F +S G A P
Sbjct: 302 TAPTNHLVAGRAMTLSPQEEVAAGQMASSSRSGPVKLEF------DVSDGATSKRAPPPR 355
Query: 229 GLAER-GAHSHLWRLKTVAERGCRRQEEPDGVAGSRADPTL----GFHHL 273
L ER G L + ++ + EE DG +G+ DP + G +HL
Sbjct: 356 RLGERSGLKPPLRKAAVRQQKAPQEVEEDDGRSGAGEDPPMPASRGSYHL 405
>gi|183396804 Regulation of nuclear pre-mRNA domain containing 2
[Homo sapiens]
Length = 1461
Score = 32.0 bits (71), Expect = 0.69
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 167 APDGCGSQGTQEAPTNLSSSSQAPSPATSSTH 198
+P S GT +P+NL+S + P+PAT+++H
Sbjct: 473 SPASRPSPGTPTSPSNLTSGLKTPAPATTTSH 504
>gi|148276998 zinc finger protein 628 [Homo sapiens]
Length = 1055
Score = 32.0 bits (71), Expect = 0.69
Identities = 33/100 (33%), Positives = 38/100 (38%), Gaps = 14/100 (14%)
Query: 139 LVGRCLDCPMDLGPPEVLLLHLDFVGMKAPDGCGSQGTQEAPTNLSSSSQAPSPATSSTH 198
LV RC C E+LL H G PD QEAP + Q PSP
Sbjct: 289 LVYRCDGCEQGFSSEELLLEHQPCPG---PDAAPQP--QEAPAEAPKADQPPSPL----- 338
Query: 199 PQTPVPSHFQGLGDQSLSPGNLGSLAKKPEGLAERGAHSH 238
PQ P P+ G L G + GL+ R HSH
Sbjct: 339 PQPPPPAAAPAPGFACLP---CGKSFRTVAGLS-RHQHSH 374
>gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax
homolog 2 [Homo sapiens]
Length = 1210
Score = 31.6 bits (70), Expect = 0.90
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 184 SSSSQAPSPATSST---HPQTPVPSHFQGLGDQSLSPGNLGS 222
S +QAPSP +ST P +P+PS +G QS S G++GS
Sbjct: 1085 SKVAQAPSPCIASTGTPSPLSPMPSPASSVGSQS-SAGSVGS 1125
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 30.8 bits (68), Expect = 1.5
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 137 GRLVGRCLDCPMDLGPPEVLLLHLDFVGMKAPDGCGSQGTQEAP--TNLSSSSQAPSPA 193
G + RCL CP G PE++ LHL + G +P + S PSP+
Sbjct: 642 GGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRPPQADASPPYARVPSGETPPSPS 700
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 30.8 bits (68), Expect = 1.5
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 137 GRLVGRCLDCPMDLGPPEVLLLHLDFVGMKAPDGCGSQGTQEAP--TNLSSSSQAPSPA 193
G + RCL CP G PE++ LHL + G +P + S PSP+
Sbjct: 642 GGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRPPQADASPPYARVPSGETPPSPS 700
>gi|98991767 mitogen-activated protein kinase kinase kinase 7
interacting protein 3 [Homo sapiens]
Length = 712
Score = 30.8 bits (68), Expect = 1.5
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 166 KAPDGCGSQGTQEAPTNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLS--PGNLGSL 223
+ P S Q P+ L PSP+T+ HP P +Q G S++ P SL
Sbjct: 299 QCPSPFSSPQHQVQPSQLGHIFMPPSPSTTPPHPYQQGPPSYQKQGSHSVAYLPYTASSL 358
Query: 224 AK 225
+K
Sbjct: 359 SK 360
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 30.8 bits (68), Expect = 1.5
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 137 GRLVGRCLDCPMDLGPPEVLLLHLDFVGMKAPDGCGSQGTQEAP--TNLSSSSQAPSPA 193
G + RCL CP G PE++ LHL + G +P + S PSP+
Sbjct: 642 GGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRPPQADASPPYARVPSGETPPSPS 700
>gi|40288203 hypothetical protein LOC219287 isoform 1 [Homo sapiens]
Length = 671
Score = 30.8 bits (68), Expect = 1.5
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 144 LDCPMDLGPPEVLLLHLDFVGMKAPD---GCGSQ-GTQEAPTNLSSSSQAPSPATSSTHP 199
+D P D + L+ D +K+ D GCG QE S P P +
Sbjct: 351 VDPPSDPSADRICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPALSK 410
Query: 200 QTPVPSHFQGLGDQSLSP 217
+ P +QG G++ SP
Sbjct: 411 KNPGVVAYQGGGEEMASP 428
>gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens]
Length = 753
Score = 30.4 bits (67), Expect = 2.0
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 168 PDGCGSQGTQEAPTNLSSS-SQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNLGSLAKK 226
P G+ + P L S+ P P ++ P P P+ G G Q + GN +L +
Sbjct: 408 PPSTGNSASLSLPLVLQPGLSEPPQPLLPASAPSAPPPAPSLGPGSQQAAFGNPPALLQP 467
Query: 227 PE 228
PE
Sbjct: 468 PE 469
>gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
[Homo sapiens]
Length = 483
Score = 30.4 bits (67), Expect = 2.0
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 168 PDGCGSQGTQEAPTNLSSSSQAPSPATSSTHPQTPVPS--HFQGLGDQS--LSPGNLGSL 223
P G + T +P ++ +SS SP++SS++ P+ S Q L + L+ G+L +
Sbjct: 274 PSGTNALTTSSSPLSVLTSSAGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGM 333
Query: 224 AKKPEGLAERG 234
A GL G
Sbjct: 334 AALNGGLGSSG 344
>gi|118918405 SAC3 domain containing 1 [Homo sapiens]
Length = 358
Score = 30.4 bits (67), Expect = 2.0
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 79 GTCVHLELACSGIHNVGDSQLDQLALVPGCEEAGPDLIDMVQCGSLTDPQQALQRSQCGR 138
GTC + A + +L +L +VPGC + P DPQ+A+ +
Sbjct: 9 GTCPDMCPAAERAQREREHRLHRLEVVPGCRQDPP----------RADPQRAV-KEYSRP 57
Query: 139 LVGRCLDCPMDLGPPEVLL 157
G+ P L PP VLL
Sbjct: 58 AAGKPRPPPSQLRPPSVLL 76
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 30.4 bits (67), Expect = 2.0
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 170 GCGSQGTQEAPTNLSSSSQAPSPATSSTHPQTPVPSHFQGLGD-QSLSPGNLGSLAKKPE 228
G G GT EAP + + + AP PA +S Q LG SL PG G + P+
Sbjct: 217 GTGPSGTCEAPVAVVTVTPAPEPAENS-----------QDLGSTSSLGPGISGPRGQAPD 265
Query: 229 GLA 231
L+
Sbjct: 266 TLS 268
>gi|156766050 AHNAK nucleoprotein 2 [Homo sapiens]
Length = 5795
Score = 30.4 bits (67), Expect = 2.0
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 127 PQQALQRSQCGRLVGRCLDCPMDLGPPEVLLLHLDFVGMKAPDGCGSQGTQEAPTNLSSS 186
PQ A+ VG + P L P E + L + +P C SQG +E +L +S
Sbjct: 4875 PQMAVPEGDLHAAVGAPVMSP--LSPGERVQCPLPSTQLPSPGTCVSQGPEELVASLQTS 4932
Query: 187 SQAPSPATS 195
AP A S
Sbjct: 4933 VVAPGEAPS 4941
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 30.0 bits (66), Expect = 2.6
Identities = 33/118 (27%), Positives = 40/118 (33%), Gaps = 22/118 (18%)
Query: 159 HLDFVGMKAPDGCGSQGTQEAPTNLSSSSQAPSP-----ATSSTHPQ----------TPV 203
++ F G K P G + + L+ + AP P A PQ P
Sbjct: 491 NIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPG 550
Query: 204 PSHFQGLGDQSLSPGNLGSLAKKPEGLAERGAHSHLWRLKTVAERGCRRQEEPDGVAG 261
P FQGL S G +G KP ERG H RG R G AG
Sbjct: 551 PPGFQGLPGPSGPAGEVG----KP---GERGLHGEFGLPGPAGPRGERGPPGESGAAG 601
>gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo
sapiens]
Length = 909
Score = 30.0 bits (66), Expect = 2.6
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 148 MDLGPPEVLLLHLDFVGMKAPDGCGSQGTQEAPTNLSSSSQAPSPATSSTHPQTPVPSHF 207
+DLG P VL DFV P G + +E P S++ + T +
Sbjct: 241 LDLGMPPVLSPPYDFVQPAGPQGSLATEAREMPCGHRGSTREDCVCSRGALSPTAGVAGM 300
Query: 208 QGLGDQSLSPGNLGSLA------KKPEGLAERGAHSHLWRLKTVAE 247
++ PG + + P AE+GAH ++L V++
Sbjct: 301 GAAAERERGPGLTDEMQYTERDWEPPPQEAEQGAHGPAFQLVPVSQ 346
>gi|9945318 MAX binding protein [Homo sapiens]
Length = 582
Score = 30.0 bits (66), Expect = 2.6
Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 23/127 (18%)
Query: 147 PMDLGPPEVLLLHLDFVGMKAPDGCGSQGTQEAPTNLSSSSQAPSPATSSTHPQTPVPSH 206
P+ L P + L+ + +K P S+ P L S+A P S P P+P+
Sbjct: 113 PLPLAPRQPALVGAPGLSIKEPAPLPSRPQVPTPAPLLPDSKATIPPNGSPKPLQPLPTP 172
Query: 207 F----------QGLGDQSLSPGNLGSL-------------AKKPEGLAERGAHSHLWRLK 243
L Q P LG+L K+P G+ R H+ L + +
Sbjct: 173 VLTIAPHPGVQPQLAPQQPPPPTLGTLKLAPAEEVKSSEQKKRPGGIGTREVHNKLEKNR 232
Query: 244 TVAERGC 250
+ C
Sbjct: 233 RAHLKEC 239
>gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]
Length = 1073
Score = 30.0 bits (66), Expect = 2.6
Identities = 26/69 (37%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 167 APDGCGSQGTQEAPTNLSSSSQAPSPATSSTH-PQTPVPSHFQGLGD-----QSLSPGNL 220
A G GS T S Q P PA SST PQ P P L Q L+PG
Sbjct: 44 AGTGVGSNATSSEDFPPPSLLQPPPPAASSTSGPQPPPPQSLNLLSQAQLQAQPLAPG-- 101
Query: 221 GSLAKKPEG 229
G+ KK G
Sbjct: 102 GTQMKKKSG 110
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 29.6 bits (65), Expect = 3.4
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 168 PDGCGSQ--GTQEAPTNLSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNLGSLAK 225
P G GS TQEA L+ AP P S+ P TP P+ Q + +S G +
Sbjct: 524 PMGPGSSIAFTQEAQNGLTQEELAP-PTPSA--PGTPEPTEMQSPSTREISDLAFGGSQQ 580
Query: 226 KPEGLAERGAHSH 238
PE A SH
Sbjct: 581 SPEVAAPEPPGSH 593
>gi|223941923 OTU domain containing 1 [Homo sapiens]
Length = 481
Score = 29.6 bits (65), Expect = 3.4
Identities = 33/102 (32%), Positives = 37/102 (36%), Gaps = 24/102 (23%)
Query: 168 PDGCGSQGTQEAPTN---LSSSSQAPSPATSSTHPQTPVPSHFQGLGDQSLSPGNLGSLA 224
P+ G T+E P LS QA + A TP G PG G
Sbjct: 177 PEPAGLDATREGPDRNFRLSEHRQALAAAKHRGPAATP--------GSPDPGPGPWGE-- 226
Query: 225 KKPEGLAERGAHSHLWRLKTVAERGCRRQEEPDGVAGSRADP 266
E LAERG W ERG R + P G A R DP
Sbjct: 227 ---EHLAERGPRG--W------ERGGDRCDAPGGDAARRPDP 257
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 29.6 bits (65), Expect = 3.4
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 172 GSQGTQEAPTNLSSSSQA-PSPATSSTHPQTPVPSHFQGLGDQ-SLSPGNLGSLAKKPEG 229
G G P+ + SQ PSP S H +PVP+ G Q S PG P+
Sbjct: 102 GHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQA 161
Query: 230 LAER 233
L ++
Sbjct: 162 LGQQ 165
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 29.6 bits (65), Expect = 3.4
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 172 GSQGTQEAPTNLSSSSQA-PSPATSSTHPQTPVPSHFQGLGDQ-SLSPGNLGSLAKKPEG 229
G G P+ + SQ PSP S H +PVP+ G Q S PG P+
Sbjct: 102 GHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQA 161
Query: 230 LAER 233
L ++
Sbjct: 162 LGQQ 165
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 29.6 bits (65), Expect = 3.4
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 172 GSQGTQEAPTNLSSSSQA-PSPATSSTHPQTPVPSHFQGLGDQ-SLSPGNLGSLAKKPEG 229
G G P+ + SQ PSP S H +PVP+ G Q S PG P+
Sbjct: 102 GHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQA 161
Query: 230 LAER 233
L ++
Sbjct: 162 LGQQ 165
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 29.6 bits (65), Expect = 3.4
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 172 GSQGTQEAPTNLSSSSQA-PSPATSSTHPQTPVPSHFQGLGDQ-SLSPGNLGSLAKKPEG 229
G G P+ + SQ PSP S H +PVP+ G Q S PG P+
Sbjct: 102 GHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQA 161
Query: 230 LAER 233
L ++
Sbjct: 162 LGQQ 165
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,185,719
Number of Sequences: 37866
Number of extensions: 685856
Number of successful extensions: 3553
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 3480
Number of HSP's gapped (non-prelim): 145
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.