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Search of human proteins with 239749502
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749502 PREDICTED: hypothetical protein [Homo sapiens]
(105 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749502 PREDICTED: hypothetical protein [Homo sapiens] 217 1e-57
gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens] 31 0.18
gi|239754273 PREDICTED: hypothetical protein XP_002345938 [Homo ... 30 0.41
gi|239748807 PREDICTED: hypothetical protein XP_002346806 [Homo ... 30 0.41
gi|239742846 PREDICTED: hypothetical protein XP_002342676 [Homo ... 30 0.41
gi|239740902 PREDICTED: hypothetical protein XP_002344080 [Homo ... 30 0.41
gi|239740832 PREDICTED: hypothetical protein XP_002344045 [Homo ... 30 0.41
gi|239740782 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239740729 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239740679 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239753184 PREDICTED: similar to hCG2040565 [Homo sapiens] 29 0.69
gi|239747758 PREDICTED: hypothetical protein XP_002348261 [Homo ... 29 0.69
gi|239741624 PREDICTED: hypothetical protein XP_002342251 [Homo ... 29 0.69
gi|6005934 upstream stimulatory factor 1 isoform 1 [Homo sapiens] 29 0.69
gi|4506835 small inducible cytokine A21 precursor [Homo sapiens] 29 0.69
gi|46877102 upstream stimulatory factor 1 isoform 2 [Homo sapiens] 29 0.69
gi|164519146 GATA zinc finger domain containing 2A [Homo sapiens] 29 0.90
gi|15011844 selenophosphate synthetase 2 [Homo sapiens] 29 0.90
gi|88196790 coiled-coil domain containing 88 [Homo sapiens] 28 1.2
gi|14702169 plasminogen activator, tissue isoform 3 preproprotei... 28 2.0
gi|239752744 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|5902082 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 [H... 28 2.0
gi|222418604 hypothetical protein LOC257407 [Homo sapiens] 27 2.6
gi|21704279 jagged 2 isoform b precursor [Homo sapiens] 27 2.6
gi|21704277 jagged 2 isoform a precursor [Homo sapiens] 27 2.6
gi|33186901 hypothetical protein LOC359845 [Homo sapiens] 27 2.6
gi|33286446 opioid growth factor receptor [Homo sapiens] 27 3.4
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 27 3.4
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I... 27 3.4
>gi|239749502 PREDICTED: hypothetical protein [Homo sapiens]
Length = 105
Score = 217 bits (553), Expect = 1e-57
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MAASILDTYQAPGTILEPSPSPQLSGAAQRGAVAYQGCRVPQGRGAQRSGKDVAGGQGCA 60
MAASILDTYQAPGTILEPSPSPQLSGAAQRGAVAYQGCRVPQGRGAQRSGKDVAGGQGCA
Sbjct: 1 MAASILDTYQAPGTILEPSPSPQLSGAAQRGAVAYQGCRVPQGRGAQRSGKDVAGGQGCA 60
Query: 61 CRKTPLTTGAAFTATFRQAGTNSQRAIIPRAASWHPRGHMPRAEE 105
CRKTPLTTGAAFTATFRQAGTNSQRAIIPRAASWHPRGHMPRAEE
Sbjct: 61 CRKTPLTTGAAFTATFRQAGTNSQRAIIPRAASWHPRGHMPRAEE 105
>gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 1215
Score = 31.2 bits (69), Expect = 0.18
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 18 PSPSPQLSGAAQRGAVAYQGCRVPQGRGAQRSGKDVAGGQGCACRKTPLTTGAAFTATFR 77
P+ P QR A +G P A R+G+ A G G + P A F+ +
Sbjct: 96 PARDPVPLAGRQRAGAAPRGPGGPARTPAVRAGRRAADGPG---EEAPAPGRARFSGLSQ 152
Query: 78 QAGTNSQRAIIPRAASWHPRG 98
G + A+ PR PRG
Sbjct: 153 PRGPQPRAAVRPRRGGALPRG 173
>gi|239754273 PREDICTED: hypothetical protein XP_002345938 [Homo
sapiens]
Length = 107
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 4 SILDTYQAPGTILEPSPSPQLSGAAQRGAVAYQGC 38
S+ + + P +L+P PQ QRGA +QGC
Sbjct: 28 SLQEAVRVPADLLDPQVPPQSPLFLQRGAPGHQGC 62
>gi|239748807 PREDICTED: hypothetical protein XP_002346806 [Homo
sapiens]
Length = 107
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 4 SILDTYQAPGTILEPSPSPQLSGAAQRGAVAYQGC 38
S+ + + P +L+P PQ QRGA +QGC
Sbjct: 28 SLQEAVRVPADLLDPQVPPQSPLFLQRGAPGHQGC 62
>gi|239742846 PREDICTED: hypothetical protein XP_002342676 [Homo
sapiens]
Length = 107
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 4 SILDTYQAPGTILEPSPSPQLSGAAQRGAVAYQGC 38
S+ + + P +L+P PQ QRGA +QGC
Sbjct: 28 SLQEAVRVPADLLDPQVPPQSPLFLQRGAPGHQGC 62
>gi|239740902 PREDICTED: hypothetical protein XP_002344080 [Homo
sapiens]
Length = 107
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 4 SILDTYQAPGTILEPSPSPQLSGAAQRGAVAYQGC 38
S+ + + P +L+P PQ QRGA +QGC
Sbjct: 28 SLQEAVRVPADLLDPQVPPQSPLFLQRGAPGHQGC 62
>gi|239740832 PREDICTED: hypothetical protein XP_002344045 [Homo
sapiens]
Length = 107
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 4 SILDTYQAPGTILEPSPSPQLSGAAQRGAVAYQGC 38
S+ + + P +L+P PQ QRGA +QGC
Sbjct: 28 SLQEAVRVPADLLDPQVPPQSPLFLQRGAPGHQGC 62
>gi|239740782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 4 SILDTYQAPGTILEPSPSPQLSGAAQRGAVAYQGC 38
S+ + + P +L+P PQ QRGA +QGC
Sbjct: 28 SLQEAVRVPADLLDPQVPPQSPLFLQRGAPGHQGC 62
>gi|239740729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 4 SILDTYQAPGTILEPSPSPQLSGAAQRGAVAYQGC 38
S+ + + P +L+P PQ QRGA +QGC
Sbjct: 28 SLQEAVRVPADLLDPQVPPQSPLFLQRGAPGHQGC 62
>gi|239740679 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 4 SILDTYQAPGTILEPSPSPQLSGAAQRGAVAYQGC 38
S+ + + P +L+P PQ QRGA +QGC
Sbjct: 28 SLQEAVRVPADLLDPQVPPQSPLFLQRGAPGHQGC 62
>gi|239753184 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 197
Score = 29.3 bits (64), Expect = 0.69
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 6 LDTYQAPGTILEPSPSPQLSGAAQRGAVAYQGCRVPQGRGAQRSGKDVAGGQGCACRKTP 65
+DT Q T L P+P + A A +G +VP+G + GK AG +G P
Sbjct: 125 VDTPQRRSTRLSAKPAPPKPEPKPKKAPAKKGEKVPKG----KKGKADAGKEG----NYP 176
Query: 66 LTTGAAFTATFRQA 79
G A T R+A
Sbjct: 177 AEKGDAITDQAREA 190
>gi|239747758 PREDICTED: hypothetical protein XP_002348261 [Homo
sapiens]
Length = 197
Score = 29.3 bits (64), Expect = 0.69
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 6 LDTYQAPGTILEPSPSPQLSGAAQRGAVAYQGCRVPQGRGAQRSGKDVAGGQGCACRKTP 65
+DT Q T L P+P + A A +G +VP+G + GK AG +G P
Sbjct: 125 VDTPQRRSTRLSAKPAPPKPEPKPKKAPAKKGEKVPKG----KKGKADAGKEG----NYP 176
Query: 66 LTTGAAFTATFRQA 79
G A T R+A
Sbjct: 177 AEKGDAITDQAREA 190
>gi|239741624 PREDICTED: hypothetical protein XP_002342251 [Homo
sapiens]
Length = 197
Score = 29.3 bits (64), Expect = 0.69
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 6 LDTYQAPGTILEPSPSPQLSGAAQRGAVAYQGCRVPQGRGAQRSGKDVAGGQGCACRKTP 65
+DT Q T L P+P + A A +G +VP+G + GK AG +G P
Sbjct: 125 VDTPQRRSTRLSAKPAPPKPEPKPKKAPAKKGEKVPKG----KKGKADAGKEG----NYP 176
Query: 66 LTTGAAFTATFRQA 79
G A T R+A
Sbjct: 177 AEKGDAITDQAREA 190
>gi|6005934 upstream stimulatory factor 1 isoform 1 [Homo sapiens]
Length = 310
Score = 29.3 bits (64), Expect = 0.69
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 27 AAQRGAVAYQGCRVPQGRGAQRSGKDVA-----GGQGCACRKTPLTTGAAFTATFRQAGT 81
AA+ + V G G SG A G + + TP TG F Q
Sbjct: 111 AAETHYTYFPSTAVGDGAGGTTSGSTAAVVTTQGSEALLGQATPPGTGQFFVMMSPQEVL 170
Query: 82 N--SQRAIIPRAASWHPRGHMPR 102
SQR+I PR + P+ PR
Sbjct: 171 QGGSQRSIAPRTHPYSPKSEAPR 193
>gi|4506835 small inducible cytokine A21 precursor [Homo sapiens]
Length = 134
Score = 29.3 bits (64), Expect = 0.69
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 11/44 (25%)
Query: 16 LEPSPSPQLSGAAQRGAVAYQGCRVPQGRGAQRSGKDVAGGQGC 59
L+ +PSPQ QGCR + RGA ++GK G +GC
Sbjct: 90 LDKTPSPQKPA---------QGCR--KDRGASKTGKKGKGSKGC 122
>gi|46877102 upstream stimulatory factor 1 isoform 2 [Homo sapiens]
Length = 251
Score = 29.3 bits (64), Expect = 0.69
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 27 AAQRGAVAYQGCRVPQGRGAQRSGKDVA-----GGQGCACRKTPLTTGAAFTATFRQAGT 81
AA+ + V G G SG A G + + TP TG F Q
Sbjct: 52 AAETHYTYFPSTAVGDGAGGTTSGSTAAVVTTQGSEALLGQATPPGTGQFFVMMSPQEVL 111
Query: 82 N--SQRAIIPRAASWHPRGHMPR 102
SQR+I PR + P+ PR
Sbjct: 112 QGGSQRSIAPRTHPYSPKSEAPR 134
>gi|164519146 GATA zinc finger domain containing 2A [Homo sapiens]
Length = 633
Score = 28.9 bits (63), Expect = 0.90
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 11/54 (20%)
Query: 19 SPSPQLSGAAQRGAVAYQGCRVPQGRGAQRSGKDVAGGQGCAC---RKTPLTTG 69
SPSP+L +A A+ R + S + V+ G+G A +KTPL+TG
Sbjct: 546 SPSPKLQNSASATALV--------SRTGRHSERTVSAGKGSATSNWKKTPLSTG 591
>gi|15011844 selenophosphate synthetase 2 [Homo sapiens]
Length = 448
Score = 28.9 bits (63), Expect = 0.90
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 19 SPSPQLSGAAQRGAVAYQGCRVPQGR------GAQRS------GKDVAGGQGCACRKTPL 66
SPS +L+G + + GC+VPQ G R G+ + GGQ A ++ L
Sbjct: 46 SPSWRLTGFS---GMKGUGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEASQEAGL 102
Query: 67 TTGAAFTATFRQAGTNSQRAIIP 89
GA + TF G +IP
Sbjct: 103 PAGAGPSPTFPALGIGMDSCVIP 125
>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
Length = 1476
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 10 QAPGTILEPSPSPQLSGAAQRGAVAYQGCRVPQGRGAQRSGKD 52
Q PGT ++ +PQL G G A QG VP+ G ++ G +
Sbjct: 608 QGPGTKIQ---APQLLGGETEGREAPQGELVPEAWGLRQEGPE 647
>gi|14702169 plasminogen activator, tissue isoform 3 preproprotein
[Homo sapiens]
Length = 516
Score = 27.7 bits (60), Expect = 2.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 19 SPSPQLSGAAQRGAVAYQGCRVPQ 42
SPS ++ +RGA +YQGC P+
Sbjct: 21 SPSQEIHARFRRGARSYQGCSEPR 44
>gi|239752744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 361
Score = 27.7 bits (60), Expect = 2.0
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 17 EPSPSPQLSGAAQRGAVAYQGCRVPQG-RGAQRSGKDVAGGQGCACRKTPLTTGAA 71
EP P P+ SGAA+ G A R G GA SG A G + R T GAA
Sbjct: 304 EPEPEPERSGAARSGTGAES--RAGAGASGALTSGP--AAGSAVSRRSLLATAGAA 355
>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 16 LEPSPSPQLSGAAQRGAVAYQGCRVPQGRGAQRSGKDVAGGQGCACR 62
L P P L G GA A G G GAQRS + AG GC R
Sbjct: 214 LSPPMGPDLGGGGG-GAGAGAGA----GAGAQRSAAEAAGCLGCLPR 255
>gi|5902082 ST3 beta-galactoside alpha-2,3-sialyltransferase 2
[Homo sapiens]
Length = 350
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 40 VPQGRGAQRSGKDVAGGQGCACRKTPLTTGAA 71
VP G QR K+ G+ CACR+ GA+
Sbjct: 51 VPGYAGLQRLSKERLSGKSCACRRCMGDAGAS 82
>gi|222418604 hypothetical protein LOC257407 [Homo sapiens]
Length = 295
Score = 27.3 bits (59), Expect = 2.6
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 22 PQLSGAAQRGAVAYQGCRVPQGRGAQRSGKDVAGGQGCA 60
P GAA+ G A +G RGAQR+ + AG G A
Sbjct: 58 PPEPGAAKPGGAAAEGAGPGAARGAQRAAR-AAGAAGAA 95
>gi|21704279 jagged 2 isoform b precursor [Homo sapiens]
Length = 1200
Score = 27.3 bits (59), Expect = 2.6
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 17 EPSPSPQLSGAAQRGAVAYQGCRVPQGRGAQRSGKDVAGGQGCACRKTPLTTGAAF 72
E SP GA + C P GR R + + G+ C R TP G+++
Sbjct: 792 ECQSSPCAYGATCVDEINGYRCSCPPGRAGPRCQEVIGFGRSCWSRGTPFPHGSSW 847
>gi|21704277 jagged 2 isoform a precursor [Homo sapiens]
Length = 1238
Score = 27.3 bits (59), Expect = 2.6
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 17 EPSPSPQLSGAAQRGAVAYQGCRVPQGRGAQRSGKDVAGGQGCACRKTPLTTGAAF 72
E SP GA + C P GR R + + G+ C R TP G+++
Sbjct: 830 ECQSSPCAYGATCVDEINGYRCSCPPGRAGPRCQEVIGFGRSCWSRGTPFPHGSSW 885
>gi|33186901 hypothetical protein LOC359845 [Homo sapiens]
Length = 214
Score = 27.3 bits (59), Expect = 2.6
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 11 APGTILEPSPSPQLSGAAQRGA----VAYQGCRVPQGRGAQRSGKDVAG---GQGCACRK 63
+P + L PSPSP G A G A G P A + A GCA R
Sbjct: 26 SPDSGLPPSPSPSHWGLAAGGGGGERAAAPGTLEPDAAAATPAAPSPASLPLAPGCALRL 85
Query: 64 TPLTTG 69
PL+ G
Sbjct: 86 CPLSFG 91
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 26.9 bits (58), Expect = 3.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 20 PSPQLSGAAQRGAVAYQGCRVPQGRGAQRSGKDVAGGQ 57
P PQ + ++ A+ +GC + Q G+ R+G GGQ
Sbjct: 399 PGPQSASEVEKIALNLEGCALSQ--GSLRTGTQEVGGQ 434
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 26.9 bits (58), Expect = 3.4
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 12 PGTILEPSPSPQLSGAAQRGAVAYQGCRVPQGRGAQRSGKDVAGGQGCA 60
P T+++P P+ S A ++ R P G G+ SG++ +G A
Sbjct: 500 PHTLVQPIPATLASDPASCPCCQHEDGRRPSGLGSTDSGQEGSGSGSSA 548
>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform a [Homo sapiens]
Length = 2223
Score = 26.9 bits (58), Expect = 3.4
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 12 PGTILEPSPSPQLSGAAQRGAVAYQGCRVPQGRGAQRSGKDVAGGQGCA 60
P T+++P P+ S A ++ R P G G+ SG++ +G A
Sbjct: 535 PHTLVQPIPATLASDPASCPCCQHEDGRRPSGLGSTDSGQEGSGSGSSA 583
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.129 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,645,767
Number of Sequences: 37866
Number of extensions: 215949
Number of successful extensions: 932
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 900
Number of HSP's gapped (non-prelim): 78
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.