Search of human proteins with 117938738

Search of human proteins with 117938738

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|117938738 constitutive androstane receptor isoform 12 [Homo
sapiens]
         (315 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|117938738 constitutive androstane receptor isoform 12 [Homo s...   641   0.0  
gi|117938744 constitutive androstane receptor isoform 13 [Homo s...   628   e-180
gi|117938729 constitutive androstane receptor isoform 6 [Homo sa...   616   e-177
gi|117938746 constitutive androstane receptor isoform 7 [Homo sa...   613   e-176
gi|117938748 constitutive androstane receptor isoform 14 [Homo s...   611   e-175
gi|117938756 constitutive androstane receptor isoform 1 [Homo sa...   563   e-161
gi|117938736 constitutive androstane receptor isoform 9 [Homo sa...   561   e-160
gi|117938752 constitutive androstane receptor isoform 2 [Homo sa...   547   e-156
gi|117938750 constitutive androstane receptor isoform 10 [Homo s...   545   e-155
gi|4826661 constitutive androstane receptor isoform 3 [Homo sapi...   533   e-152
gi|117938742 constitutive androstane receptor isoform 15 [Homo s...   524   e-149
gi|117938740 constitutive androstane receptor isoform 8 [Homo sa...   513   e-145
gi|117938754 constitutive androstane receptor isoform 4 [Homo sa...   459   e-129
gi|117938732 constitutive androstane receptor isoform 11 [Homo s...   458   e-129
gi|117938734 constitutive androstane receptor isoform 5 [Homo sa...   446   e-125
gi|14702164 nuclear receptor subfamily 1, group I, member 2 isof...   212   4e-55
gi|11863132 nuclear receptor subfamily 1, group I, member 2 isof...   200   1e-51
gi|34398348 nuclear receptor subfamily 1, group I, member 2 isof...   200   1e-51
gi|194294519 nuclear receptor subfamily 1, group H, member 3 iso...   116   3e-26
gi|194294517 nuclear receptor subfamily 1, group H, member 3 iso...   116   3e-26
gi|189491771 thyroid hormone receptor, beta [Homo sapiens]            102   3e-22
gi|189491769 thyroid hormone receptor, beta [Homo sapiens]            102   3e-22
gi|40806162 thyroid hormone receptor, beta [Homo sapiens]             102   3e-22
gi|85362735 nuclear receptor subfamily 1, group H, member 2 [Hom...   101   8e-22
gi|112181200 retinoic acid receptor, gamma isoform 2 [Homo sapiens]    98   1e-20
gi|4506423 retinoic acid receptor, gamma isoform 1 [Homo sapiens]      98   1e-20
gi|63054845 vitamin D (1,25-dihydroxyvitamin D3) receptor [Homo ...    97   2e-20
gi|4507883 vitamin D (1,25-dihydroxyvitamin D3) receptor [Homo s...    97   2e-20
gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens]    96   3e-20
gi|67459914 retinoic acid receptor, alpha isoform 2 [Homo sapiens]     96   3e-20

>gi|117938738 constitutive androstane receptor isoform 12 [Homo
           sapiens]
          Length = 315

 Score =  641 bits (1654), Expect = 0.0
 Identities = 315/315 (100%), Positives = 315/315 (100%)

Query: 1   MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
           MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL
Sbjct: 1   MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60

Query: 61  RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
           RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP
Sbjct: 61  RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120

Query: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
           TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT
Sbjct: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180

Query: 181 FCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM 240
           FCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM
Sbjct: 181 FCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM 240

Query: 241 ALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKML 300
           ALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKML
Sbjct: 241 ALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKML 300

Query: 301 GPKIGPGSKGAQWLQ 315
           GPKIGPGSKGAQWLQ
Sbjct: 301 GPKIGPGSKGAQWLQ 315


>gi|117938744 constitutive androstane receptor isoform 13 [Homo
           sapiens]
          Length = 311

 Score =  628 bits (1619), Expect = e-180
 Identities = 311/315 (98%), Positives = 311/315 (98%), Gaps = 4/315 (1%)

Query: 1   MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
           MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL
Sbjct: 1   MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60

Query: 61  RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
           RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP
Sbjct: 61  RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120

Query: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
           TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT
Sbjct: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180

Query: 181 FCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM 240
           FCLQTQNFLCGPLRYTIEDGAR    VGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM
Sbjct: 181 FCLQTQNFLCGPLRYTIEDGAR----VGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM 236

Query: 241 ALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKML 300
           ALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKML
Sbjct: 237 ALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKML 296

Query: 301 GPKIGPGSKGAQWLQ 315
           GPKIGPGSKGAQWLQ
Sbjct: 297 GPKIGPGSKGAQWLQ 311


>gi|117938729 constitutive androstane receptor isoform 6 [Homo
           sapiens]
          Length = 340

 Score =  616 bits (1589), Expect = e-177
 Identities = 305/309 (98%), Positives = 305/309 (98%), Gaps = 4/309 (1%)

Query: 7   RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
           RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA
Sbjct: 36  RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 95

Query: 67  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
           QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL
Sbjct: 96  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 155

Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
           PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ
Sbjct: 156 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 215

Query: 187 NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPA 246
           NFLCGPLRYTIEDGAR    VGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPA
Sbjct: 216 NFLCGPLRYTIEDGAR----VGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPA 271

Query: 247 PYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKMLGPKIGP 306
           PYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKMLGPKIGP
Sbjct: 272 PYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKMLGPKIGP 331

Query: 307 GSKGAQWLQ 315
           GSKGAQWLQ
Sbjct: 332 GSKGAQWLQ 340


>gi|117938746 constitutive androstane receptor isoform 7 [Homo
           sapiens]
          Length = 339

 Score =  613 bits (1581), Expect = e-176
 Identities = 304/309 (98%), Positives = 304/309 (98%), Gaps = 5/309 (1%)

Query: 7   RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
           RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA
Sbjct: 36  RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 95

Query: 67  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
           QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL
Sbjct: 96  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 155

Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
           PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ
Sbjct: 156 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 215

Query: 187 NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPA 246
           NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSP 
Sbjct: 216 NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSP- 274

Query: 247 PYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKMLGPKIGP 306
               DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKMLGPKIGP
Sbjct: 275 ----DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKMLGPKIGP 330

Query: 307 GSKGAQWLQ 315
           GSKGAQWLQ
Sbjct: 331 GSKGAQWLQ 339


>gi|117938748 constitutive androstane receptor isoform 14 [Homo
           sapiens]
          Length = 306

 Score =  611 bits (1576), Expect = e-175
 Identities = 306/315 (97%), Positives = 306/315 (97%), Gaps = 9/315 (2%)

Query: 1   MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
           MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL
Sbjct: 1   MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60

Query: 61  RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
           RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP
Sbjct: 61  RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120

Query: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
           TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT
Sbjct: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180

Query: 181 FCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM 240
           FCLQTQNFLCGPLRYTIEDGAR    VGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM
Sbjct: 181 FCLQTQNFLCGPLRYTIEDGAR----VGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM 236

Query: 241 ALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKML 300
           ALFSP     DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKML
Sbjct: 237 ALFSP-----DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKML 291

Query: 301 GPKIGPGSKGAQWLQ 315
           GPKIGPGSKGAQWLQ
Sbjct: 292 GPKIGPGSKGAQWLQ 306


>gi|117938756 constitutive androstane receptor isoform 1 [Homo
           sapiens]
          Length = 357

 Score =  563 bits (1452), Expect = e-161
 Identities = 280/280 (100%), Positives = 280/280 (100%)

Query: 7   RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
           RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA
Sbjct: 36  RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 95

Query: 67  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
           QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL
Sbjct: 96  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 155

Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
           PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ
Sbjct: 156 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 215

Query: 187 NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPA 246
           NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPA
Sbjct: 216 NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPA 275

Query: 247 PYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 286
           PYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR
Sbjct: 276 PYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 315


>gi|117938736 constitutive androstane receptor isoform 9 [Homo
           sapiens]
          Length = 324

 Score =  561 bits (1447), Expect = e-160
 Identities = 282/286 (98%), Positives = 282/286 (98%), Gaps = 4/286 (1%)

Query: 1   MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
           MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL
Sbjct: 1   MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60

Query: 61  RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
           RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP
Sbjct: 61  RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120

Query: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
           TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT
Sbjct: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180

Query: 181 FCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM 240
           FCLQTQNFLCGPLRYTIEDGAR    VGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM
Sbjct: 181 FCLQTQNFLCGPLRYTIEDGAR----VGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM 236

Query: 241 ALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 286
           ALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR
Sbjct: 237 ALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 282


>gi|117938752 constitutive androstane receptor isoform 2 [Homo
           sapiens]
          Length = 352

 Score =  547 bits (1409), Expect = e-156
 Identities = 275/280 (98%), Positives = 275/280 (98%), Gaps = 5/280 (1%)

Query: 7   RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
           RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA
Sbjct: 36  RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 95

Query: 67  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
           QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL
Sbjct: 96  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 155

Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
           PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ
Sbjct: 156 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 215

Query: 187 NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPA 246
           NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSP 
Sbjct: 216 NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSP- 274

Query: 247 PYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 286
               DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR
Sbjct: 275 ----DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 310


>gi|117938750 constitutive androstane receptor isoform 10 [Homo
           sapiens]
          Length = 319

 Score =  545 bits (1404), Expect = e-155
 Identities = 277/286 (96%), Positives = 277/286 (96%), Gaps = 9/286 (3%)

Query: 1   MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
           MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL
Sbjct: 1   MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60

Query: 61  RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
           RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP
Sbjct: 61  RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120

Query: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
           TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT
Sbjct: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180

Query: 181 FCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM 240
           FCLQTQNFLCGPLRYTIEDGAR    VGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM
Sbjct: 181 FCLQTQNFLCGPLRYTIEDGAR----VGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM 236

Query: 241 ALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 286
           ALFSP     DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR
Sbjct: 237 ALFSP-----DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 277


>gi|4826661 constitutive androstane receptor isoform 3 [Homo
           sapiens]
          Length = 348

 Score =  533 bits (1374), Expect = e-152
 Identities = 271/280 (96%), Positives = 271/280 (96%), Gaps = 9/280 (3%)

Query: 7   RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
           RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA
Sbjct: 36  RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 95

Query: 67  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
           QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL
Sbjct: 96  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 155

Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
           PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ
Sbjct: 156 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 215

Query: 187 NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPA 246
           NFLCGPLRYTIEDGAR    VGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSP 
Sbjct: 216 NFLCGPLRYTIEDGAR----VGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSP- 270

Query: 247 PYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 286
               DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR
Sbjct: 271 ----DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 306


>gi|117938742 constitutive androstane receptor isoform 15 [Homo
           sapiens]
          Length = 267

 Score =  524 bits (1350), Expect = e-149
 Identities = 267/315 (84%), Positives = 267/315 (84%), Gaps = 48/315 (15%)

Query: 1   MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
           MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL
Sbjct: 1   MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60

Query: 61  RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
           RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP
Sbjct: 61  RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120

Query: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
           TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT
Sbjct: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180

Query: 181 FCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM 240
           FCLQTQNFLCGPLRYTIEDGAR                                      
Sbjct: 181 FCLQTQNFLCGPLRYTIEDGAR-------------------------------------- 202

Query: 241 ALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKML 300
                     DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKML
Sbjct: 203 ----------DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKML 252

Query: 301 GPKIGPGSKGAQWLQ 315
           GPKIGPGSKGAQWLQ
Sbjct: 253 GPKIGPGSKGAQWLQ 267


>gi|117938740 constitutive androstane receptor isoform 8 [Homo
           sapiens]
          Length = 296

 Score =  513 bits (1320), Expect = e-145
 Identities = 261/309 (84%), Positives = 261/309 (84%), Gaps = 48/309 (15%)

Query: 7   RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
           RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA
Sbjct: 36  RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 95

Query: 67  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
           QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL
Sbjct: 96  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 155

Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
           PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ
Sbjct: 156 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 215

Query: 187 NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPA 246
           NFLCGPLRYTIEDGAR                                            
Sbjct: 216 NFLCGPLRYTIEDGAR-------------------------------------------- 231

Query: 247 PYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKMLGPKIGP 306
               DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKMLGPKIGP
Sbjct: 232 ----DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRSPGTPWIHWSGKMLGPKIGP 287

Query: 307 GSKGAQWLQ 315
           GSKGAQWLQ
Sbjct: 288 GSKGAQWLQ 296


>gi|117938754 constitutive androstane receptor isoform 4 [Homo
           sapiens]
          Length = 314

 Score =  459 bits (1180), Expect = e-129
 Identities = 237/280 (84%), Positives = 237/280 (84%), Gaps = 43/280 (15%)

Query: 7   RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
           RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA
Sbjct: 36  RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 95

Query: 67  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
           QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL
Sbjct: 96  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 155

Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
           PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ
Sbjct: 156 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 215

Query: 187 NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPA 246
           NFLCGPLRYTIEDGAR                                           A
Sbjct: 216 NFLCGPLRYTIEDGAR-------------------------------------------A 232

Query: 247 PYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 286
           PYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR
Sbjct: 233 PYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 272


>gi|117938732 constitutive androstane receptor isoform 11 [Homo
           sapiens]
          Length = 280

 Score =  458 bits (1178), Expect = e-129
 Identities = 238/286 (83%), Positives = 238/286 (83%), Gaps = 48/286 (16%)

Query: 1   MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
           MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL
Sbjct: 1   MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60

Query: 61  RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
           RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP
Sbjct: 61  RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120

Query: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
           TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT
Sbjct: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180

Query: 181 FCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM 240
           FCLQTQNFLCGPLRYTIEDGAR                                      
Sbjct: 181 FCLQTQNFLCGPLRYTIEDGAR-------------------------------------- 202

Query: 241 ALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 286
                     DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR
Sbjct: 203 ----------DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 238


>gi|117938734 constitutive androstane receptor isoform 5 [Homo
           sapiens]
          Length = 309

 Score =  446 bits (1148), Expect = e-125
 Identities = 232/280 (82%), Positives = 232/280 (82%), Gaps = 48/280 (17%)

Query: 7   RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
           RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA
Sbjct: 36  RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 95

Query: 67  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
           QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL
Sbjct: 96  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 155

Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
           PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ
Sbjct: 156 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 215

Query: 187 NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPA 246
           NFLCGPLRYTIEDGAR                                            
Sbjct: 216 NFLCGPLRYTIEDGAR-------------------------------------------- 231

Query: 247 PYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 286
               DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR
Sbjct: 232 ----DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 267


>gi|14702164 nuclear receptor subfamily 1, group I, member 2 isoform
           3 [Homo sapiens]
          Length = 397

 Score =  212 bits (539), Expect = 4e-55
 Identities = 124/295 (42%), Positives = 174/295 (58%), Gaps = 25/295 (8%)

Query: 7   RRTVSKSIGPTCPFA-GSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQ 65
           RR + ++    CPF  G+CE+++  RR C ACRL+KCL++GM+K+MI+S EA+  RRA  
Sbjct: 66  RRAMKRNARLRCPFRKGACEITRKTRRQCQACRLRKCLESGMKKEMIMSDEAVEERRALI 125

Query: 66  AQRRAQQTPVQ------LSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPL 119
            ++++++T  Q      L++EQ  +IR L+ A  +   T F  F  FR    L      +
Sbjct: 126 KRKKSERTGTQPLGVQGLTEEQRMMIRELMDAQMKTFDTTFSHFKNFRVSLQLRGEDGSV 185

Query: 120 PTLAP--------VLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVE 171
               P        +  L+ H AD++T+M   +I F K +  FR LPIEDQISLLKGAA E
Sbjct: 186 WNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFE 245

Query: 172 ICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQE 231
           +C +  NT F  +T  + CG L Y +ED A      GFQ   LE +  FH  L+KLQL E
Sbjct: 246 LCQLRFNTVFNAETGTWECGRLSYCLEDTAG-----GFQQLLLEPMLKFHYMLKKLQLHE 300

Query: 232 PEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 286
            EYVL+ A++LFSP     DRPGV Q   +DQLQE+ A+TL+SYI+  + +P  R
Sbjct: 301 EEYVLMQAISLFSP-----DRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHR 350


>gi|11863132 nuclear receptor subfamily 1, group I, member 2 isoform
           2 [Homo sapiens]
          Length = 473

 Score =  200 bits (509), Expect = 1e-51
 Identities = 127/332 (38%), Positives = 177/332 (53%), Gaps = 62/332 (18%)

Query: 7   RRTVSKSIGPTCPFA-GSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQ 65
           RR + ++    CPF  G+CE+++  RR C ACRL+KCL++GM+K+MI+S EA+  RRA  
Sbjct: 105 RRAMKRNARLRCPFRKGACEITRKTRRQCQACRLRKCLESGMKKEMIMSDEAVEERRALI 164

Query: 66  AQRRAQQTPVQ------LSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQ-P 118
            ++++++T  Q      L++EQ  +IR L+ A  +   T F  F  FR P  L    + P
Sbjct: 165 KRKKSERTGTQPLGVQGLTEEQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELP 224

Query: 119 LPTLAP--------------------------------------------VLPLVTHFAD 134
               AP                                            +  L+ H AD
Sbjct: 225 ESLQAPSREEAAKWSQVRKDLCSLKVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMAD 284

Query: 135 INTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLR 194
           ++T+M   +I F K +  FR LPIEDQISLLKGAA E+C +  NT F  +T  + CG L 
Sbjct: 285 MSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWECGRLS 344

Query: 195 YTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPG 254
           Y +ED A      GFQ   LE +  FH  L+KLQL E EYVL+ A++LFSP     DRPG
Sbjct: 345 YCLEDTAG-----GFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSP-----DRPG 394

Query: 255 VTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 286
           V Q   +DQLQE+ A+TL+SYI+  + +P  R
Sbjct: 395 VLQHRVVDQLQEQFAITLKSYIECNRPQPAHR 426


>gi|34398348 nuclear receptor subfamily 1, group I, member 2 isoform
           1 [Homo sapiens]
          Length = 434

 Score =  200 bits (509), Expect = 1e-51
 Identities = 127/332 (38%), Positives = 177/332 (53%), Gaps = 62/332 (18%)

Query: 7   RRTVSKSIGPTCPFA-GSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQ 65
           RR + ++    CPF  G+CE+++  RR C ACRL+KCL++GM+K+MI+S EA+  RRA  
Sbjct: 66  RRAMKRNARLRCPFRKGACEITRKTRRQCQACRLRKCLESGMKKEMIMSDEAVEERRALI 125

Query: 66  AQRRAQQTPVQ------LSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQ-P 118
            ++++++T  Q      L++EQ  +IR L+ A  +   T F  F  FR P  L    + P
Sbjct: 126 KRKKSERTGTQPLGVQGLTEEQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELP 185

Query: 119 LPTLAP--------------------------------------------VLPLVTHFAD 134
               AP                                            +  L+ H AD
Sbjct: 186 ESLQAPSREEAAKWSQVRKDLCSLKVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMAD 245

Query: 135 INTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLR 194
           ++T+M   +I F K +  FR LPIEDQISLLKGAA E+C +  NT F  +T  + CG L 
Sbjct: 246 MSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWECGRLS 305

Query: 195 YTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPG 254
           Y +ED A      GFQ   LE +  FH  L+KLQL E EYVL+ A++LFSP     DRPG
Sbjct: 306 YCLEDTAG-----GFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSP-----DRPG 355

Query: 255 VTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 286
           V Q   +DQLQE+ A+TL+SYI+  + +P  R
Sbjct: 356 VLQHRVVDQLQEQFAITLKSYIECNRPQPAHR 387


>gi|194294519 nuclear receptor subfamily 1, group H, member 3
           isoform c [Homo sapiens]
          Length = 402

 Score =  116 bits (290), Expect = 3e-26
 Identities = 88/295 (29%), Positives = 137/295 (46%), Gaps = 31/295 (10%)

Query: 7   RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
           RR+V K     C   G C +    RR C  CRL+KC  AGMR++ +LS E + L++ K+ 
Sbjct: 78  RRSVIKGAHYICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQ 137

Query: 67  QR----------RAQQTP---VQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRP-PAHL 112
           +           RA   P    QLS EQ  +I  L+ A  +     F   ++  P P   
Sbjct: 138 EEEQAHATSLPPRASSPPQILPQLSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPMAP 197

Query: 113 FIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEI 172
             H +             HF ++    V +++ F K LP F  L  EDQI+LLK +A+E+
Sbjct: 198 DPHSREARQ-----QRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEV 252

Query: 173 CHIVLNTTFCLQTQNF-LCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQE 231
             +  +  +   +++        Y  ED A+     G QVEF+  +F F   + +LQL +
Sbjct: 253 MLLETSRRYNPGSESITFLKDFSYNREDFAK----AGLQVEFINPIFEFSRAMNELQLND 308

Query: 232 PEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 286
            E+ LL A+++FS      DRP V  + ++++LQ      L +Y+      P DR
Sbjct: 309 AEFALLIAISIFS-----ADRPNVQDQLQVERLQHTYVEALHAYV--SIHHPHDR 356


>gi|194294517 nuclear receptor subfamily 1, group H, member 3
           isoform a [Homo sapiens]
          Length = 447

 Score =  116 bits (290), Expect = 3e-26
 Identities = 88/295 (29%), Positives = 137/295 (46%), Gaps = 31/295 (10%)

Query: 7   RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
           RR+V K     C   G C +    RR C  CRL+KC  AGMR++ +LS E + L++ K+ 
Sbjct: 123 RRSVIKGAHYICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQ 182

Query: 67  QR----------RAQQTP---VQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRP-PAHL 112
           +           RA   P    QLS EQ  +I  L+ A  +     F   ++  P P   
Sbjct: 183 EEEQAHATSLPPRASSPPQILPQLSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPMAP 242

Query: 113 FIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEI 172
             H +             HF ++    V +++ F K LP F  L  EDQI+LLK +A+E+
Sbjct: 243 DPHSREARQ-----QRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEV 297

Query: 173 CHIVLNTTFCLQTQNF-LCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQE 231
             +  +  +   +++        Y  ED A+     G QVEF+  +F F   + +LQL +
Sbjct: 298 MLLETSRRYNPGSESITFLKDFSYNREDFAK----AGLQVEFINPIFEFSRAMNELQLND 353

Query: 232 PEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 286
            E+ LL A+++FS      DRP V  + ++++LQ      L +Y+      P DR
Sbjct: 354 AEFALLIAISIFS-----ADRPNVQDQLQVERLQHTYVEALHAYV--SIHHPHDR 401


>gi|189491771 thyroid hormone receptor, beta [Homo sapiens]
          Length = 461

 Score =  102 bits (255), Expect = 3e-22
 Identities = 85/290 (29%), Positives = 132/290 (45%), Gaps = 34/290 (11%)

Query: 7   RRTVSKSIGPT--CPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAK 64
           RRT+ K++ P+  C + G C + K  R  C  CR +KC+  GM  D++L       +R  
Sbjct: 132 RRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKL 191

Query: 65  QAQRRAQQTPVQLSK----------EQEELIRTLLGAH--TRHMGTMFEQFVQFRPPAHL 112
             + R ++   +L K          E+ ELI+T+  AH  T   G+ ++Q  +F P    
Sbjct: 192 IEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPED-- 249

Query: 113 FIHHQPLPTLAPV-----LPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKG 167
            I   P+   AP      L   +HF  I T  + +V+ F K LP+F  LP EDQI LLKG
Sbjct: 250 -IGQAPIVN-APEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKG 307

Query: 168 AAVEICHIVLNTTFCLQTQNF-LCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRK 226
             +EI  +     +  +++   L G +  T     R     G      + +F    +L  
Sbjct: 308 CCMEIMSLRAAVRYDPESETLTLNGEMAVT-----RGQLKNGGLGVVSDAIFDLGMSLSS 362

Query: 227 LQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI 276
             L + E  LL A+ L S     +DRPG+   + I++ Q+   L  + YI
Sbjct: 363 FNLDDTEVALLQAVLLMS-----SDRPGLACVERIEKYQDSFLLAFEHYI 407


>gi|189491769 thyroid hormone receptor, beta [Homo sapiens]
          Length = 461

 Score =  102 bits (255), Expect = 3e-22
 Identities = 85/290 (29%), Positives = 132/290 (45%), Gaps = 34/290 (11%)

Query: 7   RRTVSKSIGPT--CPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAK 64
           RRT+ K++ P+  C + G C + K  R  C  CR +KC+  GM  D++L       +R  
Sbjct: 132 RRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKL 191

Query: 65  QAQRRAQQTPVQLSK----------EQEELIRTLLGAH--TRHMGTMFEQFVQFRPPAHL 112
             + R ++   +L K          E+ ELI+T+  AH  T   G+ ++Q  +F P    
Sbjct: 192 IEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPED-- 249

Query: 113 FIHHQPLPTLAPV-----LPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKG 167
            I   P+   AP      L   +HF  I T  + +V+ F K LP+F  LP EDQI LLKG
Sbjct: 250 -IGQAPIVN-APEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKG 307

Query: 168 AAVEICHIVLNTTFCLQTQNF-LCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRK 226
             +EI  +     +  +++   L G +  T     R     G      + +F    +L  
Sbjct: 308 CCMEIMSLRAAVRYDPESETLTLNGEMAVT-----RGQLKNGGLGVVSDAIFDLGMSLSS 362

Query: 227 LQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI 276
             L + E  LL A+ L S     +DRPG+   + I++ Q+   L  + YI
Sbjct: 363 FNLDDTEVALLQAVLLMS-----SDRPGLACVERIEKYQDSFLLAFEHYI 407


>gi|40806162 thyroid hormone receptor, beta [Homo sapiens]
          Length = 461

 Score =  102 bits (255), Expect = 3e-22
 Identities = 85/290 (29%), Positives = 132/290 (45%), Gaps = 34/290 (11%)

Query: 7   RRTVSKSIGPT--CPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAK 64
           RRT+ K++ P+  C + G C + K  R  C  CR +KC+  GM  D++L       +R  
Sbjct: 132 RRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKL 191

Query: 65  QAQRRAQQTPVQLSK----------EQEELIRTLLGAH--TRHMGTMFEQFVQFRPPAHL 112
             + R ++   +L K          E+ ELI+T+  AH  T   G+ ++Q  +F P    
Sbjct: 192 IEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPED-- 249

Query: 113 FIHHQPLPTLAPV-----LPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKG 167
            I   P+   AP      L   +HF  I T  + +V+ F K LP+F  LP EDQI LLKG
Sbjct: 250 -IGQAPIVN-APEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKG 307

Query: 168 AAVEICHIVLNTTFCLQTQNF-LCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRK 226
             +EI  +     +  +++   L G +  T     R     G      + +F    +L  
Sbjct: 308 CCMEIMSLRAAVRYDPESETLTLNGEMAVT-----RGQLKNGGLGVVSDAIFDLGMSLSS 362

Query: 227 LQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI 276
             L + E  LL A+ L S     +DRPG+   + I++ Q+   L  + YI
Sbjct: 363 FNLDDTEVALLQAVLLMS-----SDRPGLACVERIEKYQDSFLLAFEHYI 407


>gi|85362735 nuclear receptor subfamily 1, group H, member 2 [Homo
           sapiens]
          Length = 461

 Score =  101 bits (252), Expect = 8e-22
 Identities = 84/313 (26%), Positives = 135/313 (43%), Gaps = 66/313 (21%)

Query: 18  CPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTP--- 74
           C   G+C++    RR C  CRL+KC +AGMR+  +LS E +  ++ ++ Q++  Q+    
Sbjct: 125 CRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQS 184

Query: 75  ---------------------------------VQLSKEQEELIRTLLGAHTRHMGTMFE 101
                                            VQL+  QE +I+ L+ A  +     F 
Sbjct: 185 PVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFS 244

Query: 102 QFVQFRP------PAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRS 155
              +  P      P       Q             HF ++    V +++ F K +P F  
Sbjct: 245 DQPKVTPWPLGADPQSRDARQQRF----------AHFTELAIISVQEIVDFAKQVPGFLQ 294

Query: 156 LPIEDQISLLKGAAVEICHIVLNTTFCLQTQ--NFLCGPLRYTIEDGARVSPTVGFQVEF 213
           L  EDQI+LLK + +EI  +     +  +T+   FL     Y+ +D  R     G QVEF
Sbjct: 295 LGREDQIALLKASTIEIMLLETARRYNHETECITFL-KDFTYSKDDFHRA----GLQVEF 349

Query: 214 LELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQ 273
           +  +F F   +R+L L + EY LL A+ +FS      DRP V +   ++ LQ+     L 
Sbjct: 350 INPIFEFSRAMRRLGLDDAEYALLIAINIFS-----ADRPNVQEPGRVEALQQPYVEALL 404

Query: 274 SYIKGQQRRPRDR 286
           SY +   +RP+D+
Sbjct: 405 SYTR--IKRPQDQ 415


>gi|112181200 retinoic acid receptor, gamma isoform 2 [Homo sapiens]
          Length = 443

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 76/280 (27%), Positives = 131/280 (46%), Gaps = 27/280 (9%)

Query: 7   RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
           RR++ K++  TC    +C ++K  R  C  CRLQKC + GM K+ + +      ++ K+ 
Sbjct: 104 RRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN---KKKKEV 160

Query: 67  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
           +        +LS + EELI  +  AH        E F           +      +   L
Sbjct: 161 KEEGSPDSYELSPQLEELITKVSKAHQ-------ETFPSLCQLGKYTTNSSADHRVQLDL 213

Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
            L   F+++ T  ++++++F K LP F  L I DQI+LLK A ++I  + + T +  +  
Sbjct: 214 GLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQD 273

Query: 187 NFLCGPLRYTIEDGARVSPTVGFQVEF---LELLFHFHGTLRKLQLQEPEYVLLAAMALF 243
                    T  DG  ++ T      F    +L+F F G L  L++ + E  LL+A+ L 
Sbjct: 274 TM-------TFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 326

Query: 244 SPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRP 283
                  DR  + + +++D+LQE +   L+ Y   ++RRP
Sbjct: 327 -----CGDRMDLEEPEKVDKLQEPLLEALRLY--ARRRRP 359


>gi|4506423 retinoic acid receptor, gamma isoform 1 [Homo sapiens]
          Length = 454

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 76/280 (27%), Positives = 131/280 (46%), Gaps = 27/280 (9%)

Query: 7   RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
           RR++ K++  TC    +C ++K  R  C  CRLQKC + GM K+ + +      ++ K+ 
Sbjct: 115 RRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN---KKKKEV 171

Query: 67  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
           +        +LS + EELI  +  AH        E F           +      +   L
Sbjct: 172 KEEGSPDSYELSPQLEELITKVSKAHQ-------ETFPSLCQLGKYTTNSSADHRVQLDL 224

Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
            L   F+++ T  ++++++F K LP F  L I DQI+LLK A ++I  + + T +  +  
Sbjct: 225 GLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQD 284

Query: 187 NFLCGPLRYTIEDGARVSPTVGFQVEF---LELLFHFHGTLRKLQLQEPEYVLLAAMALF 243
                    T  DG  ++ T      F    +L+F F G L  L++ + E  LL+A+ L 
Sbjct: 285 TM-------TFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337

Query: 244 SPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRP 283
                  DR  + + +++D+LQE +   L+ Y   ++RRP
Sbjct: 338 -----CGDRMDLEEPEKVDKLQEPLLEALRLY--ARRRRP 370


>gi|63054845 vitamin D (1,25-dihydroxyvitamin D3) receptor [Homo
           sapiens]
          Length = 427

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 57/160 (35%), Positives = 90/160 (56%), Gaps = 11/160 (6%)

Query: 126 LPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQT 185
           L ++ H AD+ ++ + +VI F K +P FR L  EDQI LLK +A+E+  +  N +F +  
Sbjct: 224 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDD 283

Query: 186 QNFLCG--PLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALF 243
            ++ CG    +Y + D  +     G  +E +E L  F   L+KL L E E+VLL A+ + 
Sbjct: 284 MSWTCGNQDYKYRVSDVTK----AGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIV 339

Query: 244 SPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRP 283
           SP     DRPGV     I+ +Q+ ++ TLQ+YI+ +   P
Sbjct: 340 SP-----DRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPP 374



 Score = 87.4 bits (215), Expect = 1e-17
 Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 5/111 (4%)

Query: 7   RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
           RR++ +    TCPF G C ++K  RRHC ACRL++C+D GM K+ IL+ E +  +R    
Sbjct: 49  RRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMIL 108

Query: 67  QRRAQQT-----PVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHL 112
           +R+ ++        +LS+EQ+ +I  LL AH +     +  F QFRPP  +
Sbjct: 109 KRKEEEALKDSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRV 159


>gi|4507883 vitamin D (1,25-dihydroxyvitamin D3) receptor [Homo
           sapiens]
          Length = 427

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 57/160 (35%), Positives = 90/160 (56%), Gaps = 11/160 (6%)

Query: 126 LPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQT 185
           L ++ H AD+ ++ + +VI F K +P FR L  EDQI LLK +A+E+  +  N +F +  
Sbjct: 224 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDD 283

Query: 186 QNFLCG--PLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALF 243
            ++ CG    +Y + D  +     G  +E +E L  F   L+KL L E E+VLL A+ + 
Sbjct: 284 MSWTCGNQDYKYRVSDVTK----AGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIV 339

Query: 244 SPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRP 283
           SP     DRPGV     I+ +Q+ ++ TLQ+YI+ +   P
Sbjct: 340 SP-----DRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPP 374



 Score = 87.4 bits (215), Expect = 1e-17
 Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 5/111 (4%)

Query: 7   RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
           RR++ +    TCPF G C ++K  RRHC ACRL++C+D GM K+ IL+ E +  +R    
Sbjct: 49  RRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMIL 108

Query: 67  QRRAQQT-----PVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHL 112
           +R+ ++        +LS+EQ+ +I  LL AH +     +  F QFRPP  +
Sbjct: 109 KRKEEEALKDSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRV 159


>gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
          Length = 462

 Score = 96.3 bits (238), Expect = 3e-20
 Identities = 75/280 (26%), Positives = 130/280 (46%), Gaps = 27/280 (9%)

Query: 7   RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
           RR++ K++  TC    +C ++K  R  C  CRLQKC + GM K+ + +      ++ K+ 
Sbjct: 113 RRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN---KKKKEV 169

Query: 67  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
            +        L+ E  ELI  +  AH        E F           ++     ++  +
Sbjct: 170 PKPECSESYTLTPEVGELIEKVRKAHQ-------ETFPALCQLGKYTTNNSSEQRVSLDI 222

Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
            L   F++++T  +++ ++F K LP F +L I DQI+LLK A ++I  + + T +  +  
Sbjct: 223 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 282

Query: 187 NFLCGPLRYTIEDGARVSPTVGFQVEF---LELLFHFHGTLRKLQLQEPEYVLLAAMALF 243
                    T  DG  ++ T      F    +L+F F   L  L++ + E  LL+A+ L 
Sbjct: 283 TM-------TFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 335

Query: 244 SPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRP 283
                  DR  + Q D +D LQE +   L+ Y++  +RRP
Sbjct: 336 -----CGDRQDLEQPDRVDMLQEPLLEALKVYVR--KRRP 368


>gi|67459914 retinoic acid receptor, alpha isoform 2 [Homo sapiens]
          Length = 457

 Score = 96.3 bits (238), Expect = 3e-20
 Identities = 75/280 (26%), Positives = 130/280 (46%), Gaps = 27/280 (9%)

Query: 7   RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
           RR++ K++  TC    +C ++K  R  C  CRLQKC + GM K+ + +      ++ K+ 
Sbjct: 108 RRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN---KKKKEV 164

Query: 67  QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
            +        L+ E  ELI  +  AH        E F           ++     ++  +
Sbjct: 165 PKPECSESYTLTPEVGELIEKVRKAHQ-------ETFPALCQLGKYTTNNSSEQRVSLDI 217

Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
            L   F++++T  +++ ++F K LP F +L I DQI+LLK A ++I  + + T +  +  
Sbjct: 218 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 277

Query: 187 NFLCGPLRYTIEDGARVSPTVGFQVEF---LELLFHFHGTLRKLQLQEPEYVLLAAMALF 243
                    T  DG  ++ T      F    +L+F F   L  L++ + E  LL+A+ L 
Sbjct: 278 TM-------TFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 330

Query: 244 SPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRP 283
                  DR  + Q D +D LQE +   L+ Y++  +RRP
Sbjct: 331 -----CGDRQDLEQPDRVDMLQEPLLEALKVYVR--KRRP 363


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,538,974
Number of Sequences: 37866
Number of extensions: 567133
Number of successful extensions: 2389
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2085
Number of HSP's gapped (non-prelim): 201
length of query: 315
length of database: 18,247,518
effective HSP length: 102
effective length of query: 213
effective length of database: 14,385,186
effective search space: 3064044618
effective search space used: 3064044618
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.