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Search of human proteins with 117938268
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|117938268 E2F-associated phosphoprotein [Homo sapiens]
(285 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|117938268 E2F-associated phosphoprotein [Homo sapiens] 585 e-167
gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens] 45 6e-05
gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens] 45 6e-05
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 44 1e-04
gi|56090620 NFKB activating protein-like [Homo sapiens] 42 5e-04
gi|113413200 PREDICTED: similar to protein expressed in prostate... 42 8e-04
gi|88953571 PREDICTED: similar to protein expressed in prostate,... 42 8e-04
gi|134133226 protein expressed in prostate, ovary, testis, and p... 40 0.002
gi|153791352 prostate, ovary, testis expressed protein on chromo... 40 0.002
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 37 0.026
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 37 0.026
gi|4885649 SUMO-1 activating enzyme subunit 2 [Homo sapiens] 36 0.044
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 36 0.044
gi|83700233 eukaryotic translation initiation factor 3, subunit ... 35 0.058
gi|4503525 eukaryotic translation initiation factor 3, subunit C... 35 0.058
gi|160420295 hypothetical protein LOC85459 [Homo sapiens] 35 0.075
gi|188497637 cell division cycle associated 7-like isoform 3 [Ho... 35 0.098
gi|188497635 cell division cycle associated 7-like isoform 2 [Ho... 35 0.098
gi|31542537 cell division cycle associated 7-like isoform 1 [Hom... 35 0.098
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 34 0.13
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H... 34 0.13
gi|104526627 triadin [Homo sapiens] 34 0.13
gi|237649104 bromodomain containing 9 isoform 1 [Homo sapiens] 33 0.22
gi|239757964 PREDICTED: hypothetical protein [Homo sapiens] 33 0.22
gi|30795180 zinc finger, FYVE domain containing 1 isoform 1 [Hom... 33 0.22
gi|50726968 microfibrillar-associated protein 1 [Homo sapiens] 33 0.29
gi|109638749 signal recognition particle 72kDa [Homo sapiens] 33 0.29
gi|156104891 general transcription factor IIF, polypeptide 1, 74... 33 0.37
gi|6912458 calcineurin binding protein 1 [Homo sapiens] 33 0.37
gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homo... 33 0.37
>gi|117938268 E2F-associated phosphoprotein [Homo sapiens]
Length = 285
Score = 585 bits (1508), Expect = e-167
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MNRLPDDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDE 60
MNRLPDDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDE
Sbjct: 1 MNRLPDDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDE 60
Query: 61 FEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSEDEDRAVQV 120
FEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSEDEDRAVQV
Sbjct: 61 FEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSEDEDRAVQV 120
Query: 121 TKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSRQQQPVPNSDAVLN 180
TKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSRQQQPVPNSDAVLN
Sbjct: 121 TKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSRQQQPVPNSDAVLN 180
Query: 181 CPACMTTLCLDCQRHESYKTQYRAMFVMNCSINKEEVLRYKASENRKKRRVHKKMRSNRE 240
CPACMTTLCLDCQRHESYKTQYRAMFVMNCSINKEEVLRYKASENRKKRRVHKKMRSNRE
Sbjct: 181 CPACMTTLCLDCQRHESYKTQYRAMFVMNCSINKEEVLRYKASENRKKRRVHKKMRSNRE 240
Query: 241 DAAEKAETDVEEIYHPVMCTECSTEVAVYDKDEVFHFFNVLASHS 285
DAAEKAETDVEEIYHPVMCTECSTEVAVYDKDEVFHFFNVLASHS
Sbjct: 241 DAAEKAETDVEEIYHPVMCTECSTEVAVYDKDEVFHFFNVLASHS 285
>gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]
Length = 237
Score = 45.4 bits (106), Expect = 6e-05
Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 40/208 (19%)
Query: 60 EFEKEMEAELNSTMKTMEDKLSSLGTGSSSG-----------NGKVATAPTRYYDDIYFD 108
EFE++M ++ +KL S G+ SSS +G+ +++ + D
Sbjct: 50 EFEEKMNENWKKELEKHREKLLS-GSESSSKKRQRKKKEKKKSGRYSSSSSSSSDSSSSS 108
Query: 109 SDSEDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQAWV-------DAQRRGYHGL 161
SDSEDED+ Q ++KKKK +++ + + E D++D + + GL
Sbjct: 109 SDSEDEDKK-QGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEKEKDIKGL 167
Query: 162 GPQRSRQQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVMNCSINKEEVLRYK 221
+R + P S L+ Y + RA K R K
Sbjct: 168 SKKRKMYSEDKPLSSESLS--------------ESEYIEEVRA------KKKKSSEEREK 207
Query: 222 ASENRKKRRVHKKMRSNREDAAEKAETD 249
A+E KK++ HKK ++ A + D
Sbjct: 208 ATEKTKKKKKHKKHSKKKKKKAASSSPD 235
Score = 35.0 bits (79), Expect = 0.075
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 11 YAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRK----LIRECLTGESESSSEDEFEKEME 66
Y+ S + + SSS+ E + G +K+K E E+ES S+D +K+ +
Sbjct: 94 YSSSSSSSSDSSSSSSDSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKK 153
Query: 67 AELNSTMKTMEDKLSSLGTGSSSGNGKVAT---APTRYYDDIYFDSDSEDEDRAVQVTKK 123
++ + T K + K S S + +++ + + Y +++ E+R K
Sbjct: 154 SK-DGTEKEKDIKGLSKKRKMYSEDKPLSSESLSESEYIEEVRAKKKKSSEEREKATEKT 212
Query: 124 KKKKQHK 130
KKKK+HK
Sbjct: 213 KKKKKHK 219
>gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens]
Length = 247
Score = 45.4 bits (106), Expect = 6e-05
Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 40/208 (19%)
Query: 60 EFEKEMEAELNSTMKTMEDKLSSLGTGSSSG-----------NGKVATAPTRYYDDIYFD 108
EFE++M ++ +KL S G+ SSS +G+ +++ + D
Sbjct: 60 EFEEKMNENWKKELEKHREKLLS-GSESSSKKRQRKKKEKKKSGRYSSSSSSSSDSSSSS 118
Query: 109 SDSEDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQAWV-------DAQRRGYHGL 161
SDSEDED+ Q ++KKKK +++ + + E D++D + + GL
Sbjct: 119 SDSEDEDKK-QGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEKEKDIKGL 177
Query: 162 GPQRSRQQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVMNCSINKEEVLRYK 221
+R + P S L+ Y + RA K R K
Sbjct: 178 SKKRKMYSEDKPLSSESLS--------------ESEYIEEVRA------KKKKSSEEREK 217
Query: 222 ASENRKKRRVHKKMRSNREDAAEKAETD 249
A+E KK++ HKK ++ A + D
Sbjct: 218 ATEKTKKKKKHKKHSKKKKKKAASSSPD 245
Score = 35.0 bits (79), Expect = 0.075
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 11 YAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRK----LIRECLTGESESSSEDEFEKEME 66
Y+ S + + SSS+ E + G +K+K E E+ES S+D +K+ +
Sbjct: 104 YSSSSSSSSDSSSSSSDSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKK 163
Query: 67 AELNSTMKTMEDKLSSLGTGSSSGNGKVAT---APTRYYDDIYFDSDSEDEDRAVQVTKK 123
++ + T K + K S S + +++ + + Y +++ E+R K
Sbjct: 164 SK-DGTEKEKDIKGLSKKRKMYSEDKPLSSESLSESEYIEEVRAKKKKSSEEREKATEKT 222
Query: 124 KKKKQHK 130
KKKK+HK
Sbjct: 223 KKKKKHK 229
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 44.3 bits (103), Expect = 1e-04
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 15 EPSDEEPALSSSED-EVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAELNSTM 73
+PS E A ED EV+ L T QK+KL+R+ E + +D +K+ + S
Sbjct: 194 DPSQEYVASEGEEDPEVEFLKSLTTKQKQKLLRKLDRLEKKKKKKDRKKKKFQ---KSRS 250
Query: 74 KTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSEDEDRAVQVTKKKKKK 127
K + K SS + SSS + T+ + +S+S ++++ +Q K+KK K
Sbjct: 251 KHKKHKSSSSSSSSSSSSSSTETSESSS------ESESNNKEKKIQRKKRKKNK 298
>gi|56090620 NFKB activating protein-like [Homo sapiens]
Length = 402
Score = 42.4 bits (98), Expect = 5e-04
Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 30/148 (20%)
Query: 16 PSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAELNSTM-K 74
PS + P L S E TP + + + + S+S+SE+ +K+ N K
Sbjct: 139 PSPKFPQLDSDEH--------TPVEDEEEVTHQKSSSSDSNSEEHRKKKTSRSRNKKKRK 190
Query: 75 TMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSEDEDRAVQVTKKKKKKQHKI--- 131
K S N + T +SDS+D+ + V+ KKKKKK+HK
Sbjct: 191 NKSSKRKHRKYSDSDSNSESDT-----------NSDSDDDKKRVKAKKKKKKKKHKTKKK 239
Query: 132 -------PTNDELLYDPEKDNRDQAWVD 152
++D D E+D + W++
Sbjct: 240 KNKKTKKESSDSSCKDSEEDLSEATWME 267
>gi|113413200 PREDICTED: similar to protein expressed in prostate,
ovary, testis, and placenta 2 [Homo sapiens]
Length = 1038
Score = 41.6 bits (96), Expect = 8e-04
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 56 SSEDEFEKEMEAELNSTMKTMEDK----LSSLGTGSSSGNGKVATAPTRY----YDDIYF 107
S E E K+ + E+ MK E L +L G ++GNG P R + +
Sbjct: 365 SQEPEINKDGDREVEEEMKKHESNNVGLLENLSNGVTAGNGDDGLIPQRKSRTPENQQFP 424
Query: 108 DSDSEDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSR 167
D++SE+ R ++ K+KQ +P +PE+D + + ++QR G R
Sbjct: 425 DNESEEYHRICELVSDYKEKQ--MPKYSSENSNPEQDLKLTSEEESQRLKGSENGQPEKR 482
Query: 168 QQQPVPNSD 176
Q+P N D
Sbjct: 483 SQEPEINKD 491
>gi|88953571 PREDICTED: similar to protein expressed in prostate,
ovary, testis, and placenta 2 isoform 2 [Homo sapiens]
Length = 1075
Score = 41.6 bits (96), Expect = 8e-04
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 56 SSEDEFEKEMEAELNSTMKTMEDK----LSSLGTGSSSGNGKVATAPTRY----YDDIYF 107
S E E K+ + E+ MK E L +L G ++GNG P R + +
Sbjct: 402 SQEPEINKDGDREVEEEMKKHESNNVGLLENLSNGVTAGNGDDGLIPQRKSRTPENQQFP 461
Query: 108 DSDSEDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSR 167
D++SE+ R ++ K+KQ +P +PE+D + + ++QR G R
Sbjct: 462 DNESEEYHRICELVSDYKEKQ--MPKYSSENSNPEQDLKLTSEEESQRLKGSENGQPEKR 519
Query: 168 QQQPVPNSD 176
Q+P N D
Sbjct: 520 SQEPEINKD 528
>gi|134133226 protein expressed in prostate, ovary, testis, and
placenta 2 [Homo sapiens]
Length = 1075
Score = 40.4 bits (93), Expect = 0.002
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 11/163 (6%)
Query: 23 LSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSED-EFEKEMEAELNSTMKTMEDK-- 79
+SS + L T +++ + + + E S++ E K+ + E+ MK E
Sbjct: 368 ISSENSNPEQELKLTSEEESQRFKGSENSQPEKMSQELEINKDGDREVEEEMKKHESNNV 427
Query: 80 --LSSLGTGSSSGNGKVATAPTRY----YDDIYFDSDSEDEDRAVQVTKKKKKKQHKIPT 133
L +L G ++GNG P R + + D++SE+ R ++ K+KQ +P
Sbjct: 428 GLLENLTNGVTAGNGDNGLIPQRKSRTPENQQFPDNESEEYHRICELLSDYKEKQ--MPK 485
Query: 134 NDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSRQQQPVPNSD 176
+PE+D + + ++QR G R Q+P N D
Sbjct: 486 YSSENSNPEQDLKLTSEEESQRLKGSENGQPEKRSQEPEINKD 528
>gi|153791352 prostate, ovary, testis expressed protein on
chromosome 2 [Homo sapiens]
Length = 1075
Score = 40.4 bits (93), Expect = 0.002
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 56 SSEDEFEKEMEAELNSTMKTMEDK----LSSLGTGSSSGNGKVATAPTRY----YDDIYF 107
S E E K+ + E+ MK E L +L G ++GNG P R + +
Sbjct: 402 SQEPEINKDGDREVEEEMKKHESNNVGLLENLTNGVTAGNGDNGLIPQRKSRTPENQQFP 461
Query: 108 DSDSEDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSR 167
D++SE+ R ++ K+KQ +P +PE+D + + ++QR G R
Sbjct: 462 DNESEEYHRICELLSDYKEKQ--MPKYSSENSNPEQDLKLTSEEESQRLKGSENGQPEKR 519
Query: 168 QQQPVPNSD 176
Q+P N D
Sbjct: 520 SQEPEINKD 528
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 36.6 bits (83), Expect = 0.026
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 52 ESESSSEDEFEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDS 111
+ + ED +EK + E S K E+ G ++ + A + +++ D
Sbjct: 625 DEKEEEEDTYEKVFDDE--SDEKEDEEYADEKGLEAADKKAEEGDADEKLFEE---SDDK 679
Query: 112 EDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHG 160
EDED + + +K + ++E L+D E+D+ ++ + D+ RG G
Sbjct: 680 EDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDSSEKLFDDSDERGTLG 728
Score = 30.4 bits (67), Expect = 1.9
Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 30/175 (17%)
Query: 4 LPDDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEK 63
L +D + + + S+++ S E+ D +++ +C +SE SE EFE+
Sbjct: 508 LKNDCEENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEE 567
Query: 64 ------------EMEAELNSTMKTMEDKLSSLGTGSSSGNGKV--ATAPTRYYD------ 103
E E N K +E+ S G+ KV R +D
Sbjct: 568 NGLEKDLDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEK 627
Query: 104 ----DIY---FDSDS---EDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQ 148
D Y FD +S EDE+ A + + K+ + DE L++ D D+
Sbjct: 628 EEEEDTYEKVFDDESDEKEDEEYADEKGLEAADKKAEEGDADEKLFEESDDKEDE 682
Score = 29.3 bits (64), Expect = 4.1
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 14 EEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAELNSTM 73
+E + P S ED +K+ L +C SED+ KE E E+ T
Sbjct: 483 KESEEGNPVRGSEEDSPK-----KESKKKTLKNDCEENGLAKESEDDLNKESEEEVGPTK 537
Query: 74 KTMED 78
++ ED
Sbjct: 538 ESEED 542
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 36.6 bits (83), Expect = 0.026
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 52 ESESSSEDEFEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDS 111
+ + ED +EK + E S K E+ G ++ + A + +++ D
Sbjct: 625 DEKEEEEDTYEKVFDDE--SDEKEDEEYADEKGLEAADKKAEEGDADEKLFEE---SDDK 679
Query: 112 EDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHG 160
EDED + + +K + ++E L+D E+D+ ++ + D+ RG G
Sbjct: 680 EDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDSSEKLFDDSDERGTLG 728
Score = 30.4 bits (67), Expect = 1.9
Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 30/175 (17%)
Query: 4 LPDDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEK 63
L +D + + + S+++ S E+ D +++ +C +SE SE EFE+
Sbjct: 508 LKNDCEENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEE 567
Query: 64 ------------EMEAELNSTMKTMEDKLSSLGTGSSSGNGKV--ATAPTRYYD------ 103
E E N K +E+ S G+ KV R +D
Sbjct: 568 NGLEKDLDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEK 627
Query: 104 ----DIY---FDSDS---EDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQ 148
D Y FD +S EDE+ A + + K+ + DE L++ D D+
Sbjct: 628 EEEEDTYEKVFDDESDEKEDEEYADEKGLEAADKKAEEGDADEKLFEESDDKEDE 682
Score = 29.3 bits (64), Expect = 4.1
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 14 EEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAELNSTM 73
+E + P S ED +K+ L +C SED+ KE E E+ T
Sbjct: 483 KESEEGNPVRGSEEDSPK-----KESKKKTLKNDCEENGLAKESEDDLNKESEEEVGPTK 537
Query: 74 KTMED 78
++ ED
Sbjct: 538 ESEED 542
>gi|4885649 SUMO-1 activating enzyme subunit 2 [Homo sapiens]
Length = 640
Score = 35.8 bits (81), Expect = 0.044
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 53 SESSSED-EFEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYF-DSD 110
SE +D EFE +A K ED S+ GS G + +T+ + DD+ DSD
Sbjct: 535 SEDLGKDVEFEVVGDAPEKVGPKQAEDAAKSITNGSDDG-AQPSTSTAQEQDDVLIVDSD 593
Query: 111 SEDEDRAVQVTKKKKKKQHKIPTNDEL 137
ED V+++++ ++ K+ + L
Sbjct: 594 EEDSSNNADVSEEERSRKRKLDEKENL 620
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 35.8 bits (81), Expect = 0.044
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 17 SDEEPALSSSEDEVDVLLHGTPDQKRK----LIRECLTGESESSSEDEFEKEMEAELNST 72
S + + SSS+ E + G +K+K + T ESES S++ +K+ +++ + T
Sbjct: 109 SSSDSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKSK-DET 167
Query: 73 MKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDS------EDEDRAVQVTKKKKK 126
K + + S S + K ++ + D D + E+ ++A + KKKKK
Sbjct: 168 EKEKDVRSLSKKRKKSYPDDKPLSSESSSESDYEEDVQAKKKRRCEEREQAKEKVKKKKK 227
Query: 127 KQHK 130
KQHK
Sbjct: 228 KQHK 231
>gi|83700233 eukaryotic translation initiation factor 3, subunit C
[Homo sapiens]
Length = 913
Score = 35.4 bits (80), Expect = 0.058
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 16/141 (11%)
Query: 15 EPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAELNSTMK 74
E ++E+ SS EDE + + K+K E+ S +F K+M+ E +
Sbjct: 172 EKNEEDSEGSSDEDEDEDGVSAATFLKKK-------SEAPSGESRKFLKKMDDEDEDSED 224
Query: 75 TMEDKLSSLGTGSSSGN-----GKVATAPTRYYDDIYFDSDSEDEDRAVQVTKKKKKKQH 129
+ +D+ G+ SS + GK +R+ + + DED+ K++ K +
Sbjct: 225 SEDDEDWDTGSTSSDSDSEEEEGKQTALASRFLKK----APTTDEDKKAAEKKREDKAKK 280
Query: 130 KIPTNDELLYDPEKDNRDQAW 150
K + L + E+DN W
Sbjct: 281 KHDRKSKRLDEEEEDNEGGEW 301
>gi|4503525 eukaryotic translation initiation factor 3, subunit C
[Homo sapiens]
Length = 913
Score = 35.4 bits (80), Expect = 0.058
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 16/141 (11%)
Query: 15 EPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAELNSTMK 74
E ++E+ SS EDE + + K+K E+ S +F K+M+ E +
Sbjct: 172 EKNEEDSEGSSDEDEDEDGVSAATFLKKK-------SEAPSGESRKFLKKMDDEDEDSED 224
Query: 75 TMEDKLSSLGTGSSSGN-----GKVATAPTRYYDDIYFDSDSEDEDRAVQVTKKKKKKQH 129
+ +D+ G+ SS + GK +R+ + + DED+ K++ K +
Sbjct: 225 SEDDEDWDTGSTSSDSDSEEEEGKQTALASRFLKK----APTTDEDKKAAEKKREDKAKK 280
Query: 130 KIPTNDELLYDPEKDNRDQAW 150
K + L + E+DN W
Sbjct: 281 KHDRKSKRLDEEEEDNEGGEW 301
>gi|160420295 hypothetical protein LOC85459 [Homo sapiens]
Length = 2601
Score = 35.0 bits (79), Expect = 0.075
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 63 KEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSEDEDRAVQVTK 122
KE E T +E ++SS TG+SS +V + R+ + I SDS ++ +
Sbjct: 1180 KEGTQEFVHTESELEKRISSEQTGTSSSLSQVDESE-RFQECISIKSDSTIPLSHPKIPR 1238
Query: 123 KKKK----KQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYH 159
+++ QH +P D L QAW+D ++ +H
Sbjct: 1239 CQERLLRVSQHMLPLQDNL-------EEHQAWLDTEKEAFH 1272
>gi|188497637 cell division cycle associated 7-like isoform 3 [Homo
sapiens]
Length = 408
Score = 34.7 bits (78), Expect = 0.098
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 14 EEPSDEEPALSSS--EDEVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAELNS 71
++ S E SS+ ++E +L D ++ + RE T ESE S DE ++ +A L
Sbjct: 112 DKNSSSEQLFSSARLQNEKKTILERKKDCRQVIQREDSTSESEDDSRDESQESSDALLKR 171
Query: 72 TMKTMEDK 79
TM E+K
Sbjct: 172 TMNIKENK 179
>gi|188497635 cell division cycle associated 7-like isoform 2 [Homo
sapiens]
Length = 420
Score = 34.7 bits (78), Expect = 0.098
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 14 EEPSDEEPALSSS--EDEVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAELNS 71
++ S E SS+ ++E +L D ++ + RE T ESE S DE ++ +A L
Sbjct: 124 DKNSSSEQLFSSARLQNEKKTILERKKDCRQVIQREDSTSESEDDSRDESQESSDALLKR 183
Query: 72 TMKTMEDK 79
TM E+K
Sbjct: 184 TMNIKENK 191
>gi|31542537 cell division cycle associated 7-like isoform 1 [Homo
sapiens]
Length = 454
Score = 34.7 bits (78), Expect = 0.098
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 14 EEPSDEEPALSSS--EDEVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAELNS 71
++ S E SS+ ++E +L D ++ + RE T ESE S DE ++ +A L
Sbjct: 158 DKNSSSEQLFSSARLQNEKKTILERKKDCRQVIQREDSTSESEDDSRDESQESSDALLKR 217
Query: 72 TMKTMEDK 79
TM E+K
Sbjct: 218 TMNIKENK 225
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 34.3 bits (77), Expect = 0.13
Identities = 48/250 (19%), Positives = 103/250 (41%), Gaps = 42/250 (16%)
Query: 14 EEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAELNSTM 73
E+ +EE A + E ++ L D K+K+ E G E++ +E +++++ +L
Sbjct: 1343 EQLEEEEEAKHNLEKQIATLHAQVADMKKKM--EDSVGCLETA--EEVKRKLQKDLEGLS 1398
Query: 74 KTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSEDEDRAVQVTKKKKKKQHKIPT 133
+ E+K+++ K T + DD+ D D + + +KK+KK ++
Sbjct: 1399 QRHEEKVAAYDKLE-----KTKTRLQQELDDLLVDLDHQRQSAC--NLEKKQKKFDQLLA 1451
Query: 134 NDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSRQQQPVPNSDAVLNCPACMTTLCLDCQ 193
++ + + RD+A +A+ + L R+ ++ ++
Sbjct: 1452 EEKTISAKYAEERDRAEAEAREKETKALSLARALEEAMEQKAEL---------------- 1495
Query: 194 RHESYKTQYRAMFVMNCSINKEEVLRYKASENRKKRRVHKKMRSNR--EDAAEKAETDVE 251
E Q+R E+ +S++ + VH+ +S R E E+ +T +E
Sbjct: 1496 --ERLNKQFRT-----------EMEDLMSSKDDVGKSVHELEKSKRALEQQVEEMKTQLE 1542
Query: 252 EIYHPVMCTE 261
E+ + TE
Sbjct: 1543 ELEDELQATE 1552
>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
sapiens]
Length = 1094
Score = 34.3 bits (77), Expect = 0.13
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
Query: 52 ESESSSEDEFEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDS 111
+SES E E + A+ NS K D S + + +D DS+S
Sbjct: 725 DSESGRESGLENKRTAKRNSKAKGKSDSEDGEKENEKSKTSDSSNDESSSIEDSSSDSES 784
Query: 112 EDE------DRAVQVTKKKKKKQHKIP-TNDELLYDPEKDN 145
E E R V K+KK KQ + P T D L D + N
Sbjct: 785 ESEPESESESRRVTKEKEKKTKQDRTPLTKDVSLLDLDDFN 825
Score = 28.9 bits (63), Expect = 5.4
Identities = 23/104 (22%), Positives = 44/104 (42%)
Query: 52 ESESSSEDEFEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDS 111
ESES SE + E E +S + ED S + S +G + SDS
Sbjct: 693 ESESGSESGEQGESGEEGDSNEDSSEDSSSEQDSESGRESGLENKRTAKRNSKAKGKSDS 752
Query: 112 EDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQR 155
ED ++ + +K + + ++ D E ++ ++ +++R
Sbjct: 753 EDGEKENEKSKTSDSSNDESSSIEDSSSDSESESEPESESESRR 796
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 34.3 bits (77), Expect = 0.13
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 17/142 (11%)
Query: 4 LPDDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEK 63
+P P+ PAL E E +K + +T E++ +++ +K
Sbjct: 290 IPPPLPTEQASRPTPASPALEEKEGE------------KKKAEKKVTSETKKKEKEDIKK 337
Query: 64 EMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSEDEDRAVQVTKK 123
+ E E T +E K + + G K+A D+ DS+ + +V +
Sbjct: 338 KSEKE---TAIDVEKKEPGKASETKQGTVKIAAQAAAKKDEK--KEDSKKTKKPAEVEQP 392
Query: 124 KKKKQHKIPTNDELLYDPEKDN 145
K KKQ K + E P+K++
Sbjct: 393 KGKKQEKKEKHVEPAKSPKKEH 414
>gi|237649104 bromodomain containing 9 isoform 1 [Homo sapiens]
Length = 597
Score = 33.5 bits (75), Expect = 0.22
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 52 ESESSSEDEFEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDS 111
E SS ED +K +E L +K +++ L SG+G +D Y+D S
Sbjct: 11 EWRSSYEDYADKPLEKPLKLVLKVGGSEVTEL-----SGSG---------HDSSYYDDRS 56
Query: 112 EDE-DRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQ 148
+ E +R + KKKKKK K ++ L D E+ R +
Sbjct: 57 DHERERHKEKKKKKKKKSEK----EKHLDDEERRKRKE 90
>gi|239757964 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 33.5 bits (75), Expect = 0.22
Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 16/207 (7%)
Query: 39 DQKRKLIRECLTGESESSSEDEFEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAP 98
D+ RK RE E E++ + EK+ E E + + + + G +
Sbjct: 93 DRDRKRDRERRRKEKETNRNRDREKQTEIERDREREKQKGRERERDRGRERERDRDREKE 152
Query: 99 TRYYDDIYFDSDSEDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGY 158
+ D E E + +++K+K+ + + + D EK+ Q + R+
Sbjct: 153 RERQTEKDRDGQRETETERERDREREKQKERETERDRDRQRDTEKERERQTDRERDRQRK 212
Query: 159 HGLGPQRSRQQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVMNCSINKEEVL 218
QR ++ +D +R E + + R KEE
Sbjct: 213 TQTERQRETDREGERETD----------------RRRERQRDRDRGKERDRERDRKEERK 256
Query: 219 RYKASENRKKRRVHKKMRSNREDAAEK 245
+ + E +K+R+ KK RED K
Sbjct: 257 KERKKERKKERKEKKKEEKRREDKKRK 283
>gi|30795180 zinc finger, FYVE domain containing 1 isoform 1 [Homo
sapiens]
Length = 777
Score = 33.5 bits (75), Expect = 0.22
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 177 AVLNCPACMTTLCLDCQR--HESYKTQYRAMFVMNCSINKEEVLRYKASENRKKRRVHKK 234
A++ C C LCL+CQ+ H + + V N S +E + + E K++++ +K
Sbjct: 88 AIVRCQTCKINLCLECQKRTHSGGNKRRHPVTVYNVSNLQESLEAEEMDEETKRKKMTEK 147
Query: 235 MRS 237
+ S
Sbjct: 148 VVS 150
>gi|50726968 microfibrillar-associated protein 1 [Homo sapiens]
Length = 439
Score = 33.1 bits (74), Expect = 0.29
Identities = 51/266 (19%), Positives = 104/266 (39%), Gaps = 51/266 (19%)
Query: 9 DPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESES------------- 55
+P EE S +P L ++ + + + RK++ + GES+S
Sbjct: 72 EPEEQEEDSSSDPRLRRLQNRISEDVEERLARHRKIVEPEVVGESDSEVEGDAWRMERED 131
Query: 56 SSEDEFEKEMEAELNSTMKTM--------EDKLSSLGTGSSSGNGKVATAPTRYYDDIYF 107
SSE+E E+ + E+ M +++ + +G+ + + + Y + Y
Sbjct: 132 SSEEEEEEIDDEEIERRRGMMRQRAQERKNEEMEVMEVEDEGRSGEESESESEYEE--YT 189
Query: 108 DSDSEDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSR 167
DS+ E E R V +KK + E L E + + + +R+ + + ++
Sbjct: 190 DSEDEMEPRLKPVFIRKKDRVTVQEREAEALKQKELEQEAKRMAEERRKYTLKIVEEETK 249
Query: 168 QQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVMNCSINKEEVLRYKASENRK 227
++ E K A+ +N +E Y+A + R+
Sbjct: 250 KEL-------------------------EENKRSLAALDALNTDDENDEE-EYEAWKVRE 283
Query: 228 KRRVHKKMRSNREDAAEKAETDVEEI 253
+R+ K+ R +RE A EK + ++E +
Sbjct: 284 LKRI-KRDREDRE-ALEKEKAEIERM 307
>gi|109638749 signal recognition particle 72kDa [Homo sapiens]
Length = 671
Score = 33.1 bits (74), Expect = 0.29
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 108 DSDSEDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYH 159
DS +++ + + KKKKKK+ K+P N YDP+ + W+ + R Y+
Sbjct: 540 DSQPKEQGQG-DLKKKKKKKKGKLPKN----YDPKVTPDPERWLPMRERSYY 586
>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
[Homo sapiens]
Length = 517
Score = 32.7 bits (73), Expect = 0.37
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 15 EPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAEL-NSTM 73
E S+EE ++E + TP +K++ R+ + ES+SS E + + E + L +
Sbjct: 309 EESEEEKPPEEDKEEEEEKKAPTPQEKKR--RKDSSEESDSSEESDIDSEASSALFMAKK 366
Query: 74 KTMEDKLSSLGTGSSSGNGKVAT 96
KT + GSS GN + T
Sbjct: 367 KTPPKRERKPSGGSSRGNSRPGT 389
>gi|6912458 calcineurin binding protein 1 [Homo sapiens]
Length = 2220
Score = 32.7 bits (73), Expect = 0.37
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 16/98 (16%)
Query: 29 EVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAE--LNSTMKTMEDKLSSLGTG 86
+V +L TPDQ +K +R+ ++++ A+ T+K +ED LS L G
Sbjct: 1624 KVSSMLQRTPDQGKKYLRDA-------------DRQVLAQRAFILTVKVLEDTLSELAEG 1670
Query: 87 SSSGNGKVATAP-TRYYDDIYFDSDSEDEDRAVQVTKK 123
S KV P R D+ + ED + KK
Sbjct: 1671 SERPGPKVCGLPGARMTTDVSHKASPEDGQEGLPQPKK 1708
>gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homolog
[Homo sapiens]
Length = 666
Score = 32.7 bits (73), Expect = 0.37
Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 59/230 (25%)
Query: 6 DDYDPYAVEEPSDEEPALSSSEDEV-----DVLLHGTPDQKRKLI----RECLTGESESS 56
D D ++ DEE A S ED++ D + T D++R + R+ L+ E +++
Sbjct: 152 DQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEKAN 211
Query: 57 SEDE--------FEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDD---- 104
S+DE EK+ + + E+K+ + S + + R+ DD
Sbjct: 212 SDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQN----SDDERPQASDEEHRHSDDEEEQ 267
Query: 105 -----IYFDSDSEDEDRAVQVTKKKKKKQHKIPTNDELLYDPE----------------- 142
SDSEDE + K+++ I ++ E D E
Sbjct: 268 DHKSESARGSDSEDE-------VLRMKRKNAIASDSEADSDTEVPKDNSGTMDLFGGADD 320
Query: 143 ----KDNRDQAWVDAQRRGYHGLGPQRSRQQQPVPNSDAVLNCPACMTTL 188
D D+ Q +GL PQ ++++P+P + + P T L
Sbjct: 321 ISSGSDGEDKPPTPGQPVDENGL-PQDQQEEEPIPETRIEVEIPKVNTDL 369
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.127 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,933,472
Number of Sequences: 37866
Number of extensions: 574051
Number of successful extensions: 3220
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 185
Number of HSP's that attempted gapping in prelim test: 2936
Number of HSP's gapped (non-prelim): 400
length of query: 285
length of database: 18,247,518
effective HSP length: 101
effective length of query: 184
effective length of database: 14,423,052
effective search space: 2653841568
effective search space used: 2653841568
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.