Search of human proteins with 10863973

Search of human proteins with 10863973

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10863973 hepcidin antimicrobial peptide preproprotein [Homo
sapiens]
         (84 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|10863973 hepcidin antimicrobial peptide preproprotein [Homo s...   182   4e-47
gi|21265101 transmembrane 4 superfamily member 1 [Homo sapiens]        28   2.0  
gi|116805342 human immunodeficiency virus type I enhancer bindin...    28   2.0  
gi|60593040 keratin associated protein 5-10 [Homo sapiens]             27   3.5  
gi|239755911 PREDICTED: hypothetical protein [Homo sapiens]            27   4.5  
gi|239744727 PREDICTED: hypothetical protein XP_002343254 [Homo ...    27   4.5  
gi|4505111 matrilin 1, cartilage matrix protein [Homo sapiens]         27   4.5  
gi|39752687 hypothetical protein LOC375791 [Homo sapiens]              27   4.5  
gi|16933559 protocadherin LKC precursor [Homo sapiens]                 26   5.9  
gi|169204182 PREDICTED: hypothetical protein [Homo sapiens]            26   7.8  
gi|11277470 CD27-binding (Siva) protein isoform 2 [Homo sapiens]       26   7.8  
gi|11277468 CD27-binding (Siva) protein isoform 1 [Homo sapiens]       26   7.8  
gi|4759240 transmembrane 4 superfamily member 4 [Homo sapiens]         26   7.8  

>gi|10863973 hepcidin antimicrobial peptide preproprotein [Homo
          sapiens]
          Length = 84

 Score =  182 bits (463), Expect = 4e-47
 Identities = 84/84 (100%), Positives = 84/84 (100%)

Query: 1  MALSSQIWAACLLLLLLLASLTSGSVFPQQTGQLAELQPQDRAGARASWMPMFQRRRRRD 60
          MALSSQIWAACLLLLLLLASLTSGSVFPQQTGQLAELQPQDRAGARASWMPMFQRRRRRD
Sbjct: 1  MALSSQIWAACLLLLLLLASLTSGSVFPQQTGQLAELQPQDRAGARASWMPMFQRRRRRD 60

Query: 61 THFPICIFCCGCCHRSKCGMCCKT 84
          THFPICIFCCGCCHRSKCGMCCKT
Sbjct: 61 THFPICIFCCGCCHRSKCGMCCKT 84


>gi|21265101 transmembrane 4 superfamily member 1 [Homo sapiens]
          Length = 202

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)

Query: 69 CCGCCHRSKCGMCC 82
          CCGCC    CG  C
Sbjct: 75 CCGCCGHENCGKRC 88


>gi|116805342 human immunodeficiency virus type I enhancer binding
            protein 1 [Homo sapiens]
          Length = 2718

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 20   SLTSGSVFPQQTGQLAELQP---QDRAGARASWMPMFQRRR 57
            S   GS+ P QT  L ELQP     R G     +P+ +RRR
Sbjct: 1387 SFDCGSITPPQTTPLTELQPPSSPSRVGV-TGHVPLLERRR 1426


>gi|60593040 keratin associated protein 5-10 [Homo sapiens]
          Length = 202

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 66  CIFCCGCCHRSKCGMCCKT 84
           C  C  CC  S CG CC++
Sbjct: 142 CNCCKPCCCSSGCGSCCQS 160


>gi|239755911 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 667

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 22  TSGSVFPQQTGQLAELQPQDRAGARASWMPMFQRRRRRDTHFPICIFC----CGCCHRSK 77
           T  +V P   G+ +  QP  RA   A+   M + R    T  P+ + C    C    RS 
Sbjct: 141 TDAAVIPWLAGRASPCQPLTRAHTHAT--RMCRPRLHSSTSSPVMVSCSPSACSLSSRSP 198

Query: 78  C 78
           C
Sbjct: 199 C 199


>gi|239744727 PREDICTED: hypothetical protein XP_002343254 [Homo
           sapiens]
          Length = 567

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 22  TSGSVFPQQTGQLAELQPQDRAGARASWMPMFQRRRRRDTHFPICIFC----CGCCHRSK 77
           T  +V P   G+ +  QP  RA   A+   M + R    T  P+ + C    C    RS 
Sbjct: 141 TDAAVIPWLAGRASPCQPLTRAHTHAT--RMCRPRLHSSTSSPVMVSCSPSACSLSSRSP 198

Query: 78  C 78
           C
Sbjct: 199 C 199


>gi|4505111 matrilin 1, cartilage matrix protein [Homo sapiens]
          Length = 496

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 14 LLLLLASLTSGSVFPQQTGQLAELQPQD 41
          LLLLL +L S  + PQ  G L   +P D
Sbjct: 14 LLLLLQALCSPGLAPQSRGHLCRTRPTD 41


>gi|39752687 hypothetical protein LOC375791 [Homo sapiens]
          Length = 144

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 3/24 (12%)

Query: 62  HFPICIFCCGCCH---RSKCGMCC 82
           H   C  CC CCH     +C  CC
Sbjct: 116 HHCCCCPCCHCCHCPPFCRCHSCC 139


>gi|16933559 protocadherin LKC precursor [Homo sapiens]
          Length = 1310

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 5  SQIWAACLLLLLLLASLTSGSVFPQQTGQLAELQPQD-RAGARASWM 50
          +Q+W +C LL  L+ S+ +           + + P+D   GA+A W+
Sbjct: 2  AQLWLSCFLLPALVVSVAANVAPKFLANMTSVILPEDLPVGAQAFWL 48


>gi|169204182 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 220

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 9/19 (47%), Positives = 9/19 (47%)

Query: 64  PICIFCCGCCHRSKCGMCC 82
           P C  CC CC    C  CC
Sbjct: 153 PGCCCCCCCCCCCCCCWCC 171


>gi|11277470 CD27-binding (Siva) protein isoform 2 [Homo sapiens]
          Length = 110

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 70 CGCCHRSKCGMCCKT 84
          CG C R+ CG C +T
Sbjct: 62 CGQCERALCGQCVRT 76


>gi|11277468 CD27-binding (Siva) protein isoform 1 [Homo sapiens]
          Length = 175

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 70  CGCCHRSKCGMCCKT 84
           CG C R+ CG C +T
Sbjct: 127 CGQCERALCGQCVRT 141


>gi|4759240 transmembrane 4 superfamily member 4 [Homo sapiens]
          Length = 202

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 7/24 (29%)

Query: 63 FPICIF-------CCGCCHRSKCG 79
          FP  +F       CCGCC    CG
Sbjct: 61 FPALVFLGLKNNDCCGCCGNEGCG 84


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.333    0.137    0.488 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,308,573
Number of Sequences: 37866
Number of extensions: 121149
Number of successful extensions: 897
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 23
length of query: 84
length of database: 18,247,518
effective HSP length: 56
effective length of query: 28
effective length of database: 16,127,022
effective search space: 451556616
effective search space used: 451556616
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.