Guide to the Human Genome
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Name: TM4SF4 Sequence: fasta or formatted (202aa) NCBI GI: 4759240
Description:

transmembrane 4 superfamily member 4

Referenced in:

Integrins
Liver

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         11           1
 C cysteine            8.4         17           2
 D aspartate           4.5          9           2
 E glutamate           2.0          4           1
 F phenylalanine       7.9         16           2
 G glycine            15.3         31           2
 H histidine           1.0          2           1
 I isoleucine          6.9         14           2
 K lysine              3.0          6           1
 L leucine            12.4         25           2
 M methionine          2.5          5           1
 N asparagine          5.9         12           2
 P proline             4.0          8           1
 Q glutamine           2.0          4           1
 R arginine            1.5          3           1
 S serine              4.0          8           1
 T threonine           3.5          7           1
 V valine              6.4         13           2
 W tryptophan          2.0          4           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane 4 superfamily member 4 
TM4SF1                0.479   transmembrane 4 superfamily member 1 
TM4SF5                0.349   transmembrane 4 superfamily member 5 
TM4SF18               0.308   transmembrane 4 L six family member 18 
TM4SF19               0.160   transmembrane 4 L six family member 19 
TM4SF20               0.073   transmembrane 4 L six family member 20 
KREMEN1               0.007   kringle-containing transmembrane protein 1 isoform 2...
KREMEN1               0.007   kringle-containing transmembrane protein 1 isoform ...
CLDN10                0.005   claudin 10 isoform a_i1 
CACNA1I               0.005   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1I               0.005   calcium channel, voltage-dependent, T type, alpha 1I...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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