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Search of human proteins with 10863895
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|10863895 thymosin, beta 10 [Homo sapiens]
(44 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|10863895 thymosin, beta 10 [Homo sapiens] 89 8e-19
gi|11056061 thymosin, beta 4 [Homo sapiens] 69 6e-13
gi|34013530 thymosin-like 3 [Homo sapiens] 69 1e-12
gi|167555119 thymosin beta15b [Homo sapiens] 64 3e-11
gi|11496273 thymosin-like 8 [Homo sapiens] 64 3e-11
gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens] 62 8e-11
gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 56 5e-09
gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 56 5e-09
gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 56 5e-09
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ... 54 2e-08
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ... 54 2e-08
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa... 52 8e-08
gi|239754119 PREDICTED: hypothetical protein [Homo sapiens] 49 9e-07
gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo ... 49 9e-07
gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo ... 49 9e-07
gi|42734401 testis-specific serine kinase 4 [Homo sapiens] 27 4.6
gi|5453734 MAD4 [Homo sapiens] 27 4.6
gi|13128860 histone deacetylase 1 [Homo sapiens] 26 6.0
gi|162287219 prune homolog 2 [Homo sapiens] 26 6.0
>gi|10863895 thymosin, beta 10 [Homo sapiens]
Length = 44
Score = 89.0 bits (219), Expect = 8e-19
Identities = 44/44 (100%), Positives = 44/44 (100%)
Query: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRSEIS 44
MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRSEIS
Sbjct: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRSEIS 44
>gi|11056061 thymosin, beta 4 [Homo sapiens]
Length = 44
Score = 69.3 bits (168), Expect = 6e-13
Identities = 32/41 (78%), Positives = 37/41 (90%)
Query: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRS 41
M+DKPDM EI FDK+KLKKTETQEKN LP+KETIEQEK++
Sbjct: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQA 41
>gi|34013530 thymosin-like 3 [Homo sapiens]
Length = 44
Score = 68.6 bits (166), Expect = 1e-12
Identities = 32/41 (78%), Positives = 36/41 (87%)
Query: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRS 41
M+DKPDM EI FDK KLKKTETQEKN LP+KETIEQEK++
Sbjct: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQA 41
>gi|167555119 thymosin beta15b [Homo sapiens]
Length = 45
Score = 63.9 bits (154), Expect = 3e-11
Identities = 27/39 (69%), Positives = 35/39 (89%)
Query: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEK 39
M+DKPD+ E+ FD++KLKKT T+EKNTLP+KETI+QEK
Sbjct: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEK 39
>gi|11496273 thymosin-like 8 [Homo sapiens]
Length = 45
Score = 63.9 bits (154), Expect = 3e-11
Identities = 27/39 (69%), Positives = 35/39 (89%)
Query: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEK 39
M+DKPD+ E+ FD++KLKKT T+EKNTLP+KETI+QEK
Sbjct: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEK 39
>gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]
Length = 44
Score = 62.4 bits (150), Expect = 8e-11
Identities = 29/41 (70%), Positives = 35/41 (85%)
Query: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRS 41
M+DKP M EI FDK+KLKKTETQEKN L +KETIEQE+++
Sbjct: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQA 41
>gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 56.2 bits (134), Expect = 5e-09
Identities = 33/44 (75%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRSEIS 44
MA K D+ EIAS DKAKLK TE Q KNTL TKET EQEK SEIS
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEKWSEIS 43
>gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 56.2 bits (134), Expect = 5e-09
Identities = 33/44 (75%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRSEIS 44
MA K D+ EIAS DKAKLK TE Q KNTL TKET EQEK SEIS
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEKWSEIS 43
>gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 56.2 bits (134), Expect = 5e-09
Identities = 33/44 (75%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRSEIS 44
MA K D+ EIAS DKAKLK TE Q KNTL TKET EQEK SEIS
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEKWSEIS 43
>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
sapiens]
Length = 158
Score = 54.3 bits (129), Expect = 2e-08
Identities = 26/41 (63%), Positives = 32/41 (78%)
Query: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRS 41
M+DK +M EI F K+KLKKTE QEKN P+KE IEQEK++
Sbjct: 1 MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQA 41
>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
sapiens]
Length = 158
Score = 54.3 bits (129), Expect = 2e-08
Identities = 26/41 (63%), Positives = 32/41 (78%)
Query: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRS 41
M+DK +M EI F K+KLKKTE QEKN P+KE IEQEK++
Sbjct: 1 MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQA 41
>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
sapiens]
Length = 281
Score = 52.4 bits (124), Expect = 8e-08
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 2 ADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRS 41
+DK +M EI F K+KLKKTE QEKN P+KE IEQEK++
Sbjct: 125 SDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQA 164
>gi|239754119 PREDICTED: hypothetical protein [Homo sapiens]
Length = 45
Score = 48.9 bits (115), Expect = 9e-07
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEK 39
M+ KPDM ++ FD+ KLKK +EKNTL +ETI+QEK
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEK 39
>gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo
sapiens]
Length = 45
Score = 48.9 bits (115), Expect = 9e-07
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEK 39
M+ KPDM ++ FD+ KLKK +EKNTL +ETI+QEK
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEK 39
>gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo
sapiens]
Length = 45
Score = 48.9 bits (115), Expect = 9e-07
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEK 39
M+ KPDM ++ FD+ KLKK +EKNTL +ETI+QEK
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEK 39
>gi|42734401 testis-specific serine kinase 4 [Homo sapiens]
Length = 328
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 13 FDKAKLKKT--ETQEKNTLPTKETIEQEKRSEI 43
FD LKK ETQ++ T P TI QE ++ I
Sbjct: 239 FDDTNLKKLLRETQKEVTFPANHTISQECKNLI 271
>gi|5453734 MAD4 [Homo sapiens]
Length = 209
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 15 KAKLKKTETQEKNTLPTKETIEQEKR 40
K +KK E Q++ L KE ++QE R
Sbjct: 99 KVHIKKLEEQDRRALSIKEQLQQEHR 124
>gi|13128860 histone deacetylase 1 [Homo sapiens]
Length = 482
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 11 ASFDKAKLKKTETQ-EKNTLPTKETIEQEKRSE 42
++F KAK KTE + EK+ KE E+EK E
Sbjct: 435 SNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKE 467
>gi|162287219 prune homolog 2 [Homo sapiens]
Length = 3088
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 2 ADKPDMGEIASFDKAKLKKTETQEKNTLPTK--ETIEQEKRSE 42
+D P G+I + A + +E +E+ T+PTK E I+ E + E
Sbjct: 2492 SDLPAGGDIGPPNGASKEISELEEEKTIPTKEPEQIKSEYKEE 2534
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.298 0.117 0.292
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,420,345
Number of Sequences: 37866
Number of extensions: 35960
Number of successful extensions: 159
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 19
length of query: 44
length of database: 18,247,518
effective HSP length: 18
effective length of query: 26
effective length of database: 17,565,930
effective search space: 456714180
effective search space used: 456714180
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.