Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 10835071
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|10835071 CD74 antigen isoform b [Homo sapiens]
(232 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|10835071 CD74 antigen isoform b [Homo sapiens] 478 e-135
gi|68448544 CD74 antigen isoform a [Homo sapiens] 431 e-121
gi|68448537 CD74 antigen isoform c [Homo sapiens] 298 3e-81
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 32 0.60
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 32 0.60
gi|189027090 cytoplasmic polyadenylation element binding protein... 30 1.3
gi|88703045 proline rich 11 [Homo sapiens] 30 1.3
gi|169171347 PREDICTED: hypothetical protein [Homo sapiens] 29 3.9
gi|169172209 PREDICTED: hypothetical protein [Homo sapiens] 29 3.9
gi|169170953 PREDICTED: hypothetical protein [Homo sapiens] 29 3.9
gi|239508753 PREDICTED: hypothetical protein [Homo sapiens] 29 3.9
gi|18034692 CDW92 antigen [Homo sapiens] 28 5.1
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 28 6.7
gi|109638745 transforming growth factor beta 1 induced transcrip... 28 6.7
gi|21361591 transforming growth factor beta 1 induced transcript... 28 6.7
gi|23943866 family with sequence similarity 5, member B [Homo sa... 28 6.7
gi|55749531 splicing factor 3B subunit 2 [Homo sapiens] 28 8.7
>gi|10835071 CD74 antigen isoform b [Homo sapiens]
Length = 232
Score = 478 bits (1229), Expect = e-135
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 1 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL 60
MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL
Sbjct: 1 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL 60
Query: 61 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM 120
LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM
Sbjct: 61 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM 120
Query: 121 GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV 180
GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV
Sbjct: 121 GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV 180
Query: 181 FESWMHHWLLFEMSRHSLEQKPTDAPPKESLELEDPSSGLGVTKQDLGPVPM 232
FESWMHHWLLFEMSRHSLEQKPTDAPPKESLELEDPSSGLGVTKQDLGPVPM
Sbjct: 181 FESWMHHWLLFEMSRHSLEQKPTDAPPKESLELEDPSSGLGVTKQDLGPVPM 232
>gi|68448544 CD74 antigen isoform a [Homo sapiens]
Length = 296
Score = 431 bits (1107), Expect = e-121
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL 60
MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL
Sbjct: 1 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL 60
Query: 61 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM 120
LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM
Sbjct: 61 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM 120
Query: 121 GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV 180
GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV
Sbjct: 121 GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV 180
Query: 181 FESWMHHWLLFEMSRHSLEQKPTDAPPK 208
FESWMHHWLLFEMSRHSLEQKPTDAPPK
Sbjct: 181 FESWMHHWLLFEMSRHSLEQKPTDAPPK 208
Score = 51.6 bits (122), Expect = 6e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Query: 209 ESLELEDPSSGLGVTKQDLGPVPM 232
ESLELEDPSSGLGVTKQDLGPVPM
Sbjct: 273 ESLELEDPSSGLGVTKQDLGPVPM 296
>gi|68448537 CD74 antigen isoform c [Homo sapiens]
Length = 160
Score = 298 bits (763), Expect = 3e-81
Identities = 147/148 (99%), Positives = 148/148 (100%)
Query: 1 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL 60
MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL
Sbjct: 1 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL 60
Query: 61 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM 120
LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM
Sbjct: 61 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM 120
Query: 121 GALPQGPMQNATKYGNMTEDHVMHLLQN 148
GALPQGPMQNATKYGNMTEDHVMHLLQ+
Sbjct: 121 GALPQGPMQNATKYGNMTEDHVMHLLQS 148
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 31.6 bits (70), Expect = 0.60
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 89 QLENLRMKLPKPPKPVSKM------RMATPLLMQALPMGALPQGPMQNATKYGNMTEDHV 142
QL+ +RM+ P P P + R A P ++Q P + MQ + H
Sbjct: 530 QLQQMRMQQPPAPVPTTTTTTQQHPRQAAPQMLQQQPPRLISVQTMQRGNMNCGAFQAHQ 589
Query: 143 MHLLQNADPLKVYPPLKG 160
M L QNA + P G
Sbjct: 590 MRLAQNAARIPGIPRHSG 607
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 31.6 bits (70), Expect = 0.60
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 89 QLENLRMKLPKPPKPVSKM------RMATPLLMQALPMGALPQGPMQNATKYGNMTEDHV 142
QL+ +RM+ P P P + R A P ++Q P + MQ + H
Sbjct: 530 QLQQMRMQQPPAPVPTTTTTTQQHPRQAAPQMLQQQPPRLISVQTMQRGNMNCGAFQAHQ 589
Query: 143 MHLLQNADPLKVYPPLKG 160
M L QNA + P G
Sbjct: 590 MRLAQNAARIPGIPRHSG 607
>gi|189027090 cytoplasmic polyadenylation element binding protein 4
[Homo sapiens]
Length = 729
Score = 30.4 bits (67), Expect = 1.3
Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 89 QLENLRMKLPKPPKPVSKMRMATPLLMQALPMGALPQGPMQNATKYGNMTEDHVMHLLQN 148
QL +L L KPP P S + +P + G G G+ DH L
Sbjct: 270 QLPHLANNLNKPPSPWSSYQSPSPTPSSSWSPGGGGYGGWG-----GSQGRDHRRGLNGG 324
Query: 149 ADPLKVYPPLKGSFPENLRHLKNTMETIDWKVFESWM 185
PL PLK +F N L+ +SWM
Sbjct: 325 ITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSWM 361
>gi|88703045 proline rich 11 [Homo sapiens]
Length = 360
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 97 LPKPPKPVSKMRMATPLLMQALPMGALPQ-GPMQNATK 133
LP PP P++ + + P L +AL G L + GPMQ K
Sbjct: 193 LPPPPPPLAPVLLRKPSLAKALQAGPLKKDGPMQITVK 230
>gi|169171347 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1128
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 87 NLQLENLRMKLP-KPPKPVSKMRMATPLLMQALPMGALPQGPMQNATKYGNMTEDH 141
+L+LE+LR ++P +PP P+ + + L LP A P Q G H
Sbjct: 576 HLELESLRERVPCEPPPPLPPLLLGVSLPPFGLPTSASEPDPAQRVQSTGVYRHRH 631
>gi|169172209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 87 NLQLENLRMKLP-KPPKPVSKMRMATPLLMQALPMGALPQGPMQNATKYGNMTEDH 141
+L+LE+LR ++P +PP P+ + + L LP A P Q G H
Sbjct: 249 HLELESLRERVPCEPPPPLPPLLLGVSLPPFGLPTSASEPDPAQRVQSTGVYRHRH 304
>gi|169170953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 87 NLQLENLRMKLP-KPPKPVSKMRMATPLLMQALPMGALPQGPMQNATKYGNMTEDH 141
+L+LE+LR ++P +PP P+ + + L LP A P Q G H
Sbjct: 249 HLELESLRERVPCEPPPPLPPLLLGVSLPPFGLPTSASEPDPAQRVQSTGVYRHRH 304
>gi|239508753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 87 NLQLENLRMKLP-KPPKPVSKMRMATPLLMQALPMGALPQGPMQNATKYGNMTEDH 141
+L+LE+LR ++P +PP P+ + + L LP A P Q G H
Sbjct: 249 HLELESLRERVPCEPPPPLPPLLLGVSLPPFGLPTSASEPDPAQRVQSTGVYRHRH 304
>gi|18034692 CDW92 antigen [Homo sapiens]
Length = 657
Score = 28.5 bits (62), Expect = 5.1
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 54 SILVTLLLAGQATTAYFLYQQQGRLDKLTVTSQNLQL--ENLRMKL 97
+ILV L G ++LY +Q R K TVT + LQ+ +NLR L
Sbjct: 245 TILVILGSLGGTGVLWWLYAKQRRSPKETVTPEQLQIAEDNLRALL 290
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 28.1 bits (61), Expect = 6.7
Identities = 28/77 (36%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 98 PKPPKPVS----KMRMATPLLMQALPMGAL---PQGPMQNATKYGNMTEDHV-MHLLQNA 149
P PP+PV+ A P +AL GAL P P N M +V LLQ
Sbjct: 679 PSPPQPVTLGAVPAPQAPPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYVDPRLLQGR 738
Query: 150 DPLKVYPPLKGSFPENL 166
PL YPP G P L
Sbjct: 739 PPLDFYPP--GVHPSGL 753
>gi|109638745 transforming growth factor beta 1 induced transcript 1
isoform 1 [Homo sapiens]
Length = 461
Score = 28.1 bits (61), Expect = 6.7
Identities = 35/142 (24%), Positives = 49/142 (34%), Gaps = 5/142 (3%)
Query: 37 PGAPESKCSRGALYTGFSILVTLLLAGQATTAYFLYQQQGRLDKLTVTS----QNLQLEN 92
P AP S G L TG L LL AT + + V S ++ +
Sbjct: 74 PAAPPFSSSSGVLGTGLCELDRLLQELNATQFNITDEIMSQFPSSKVASGEQKEDQSEDK 133
Query: 93 LRMKLPKPPKPVSKMRMATPLLMQA-LPMGALPQGPMQNATKYGNMTEDHVMHLLQNADP 151
R LP P P AT ++ M +L +QN T+ V+ P
Sbjct: 134 KRPSLPSSPSPGLPKASATSATLELDRLMASLSDFRVQNHLPASGPTQPPVVSSTNEGSP 193
Query: 152 LKVYPPLKGSFPENLRHLKNTM 173
P KGS L L++ +
Sbjct: 194 SPPEPTGKGSLDTMLGLLQSDL 215
>gi|21361591 transforming growth factor beta 1 induced transcript 1
isoform 2 [Homo sapiens]
Length = 444
Score = 28.1 bits (61), Expect = 6.7
Identities = 35/142 (24%), Positives = 49/142 (34%), Gaps = 5/142 (3%)
Query: 37 PGAPESKCSRGALYTGFSILVTLLLAGQATTAYFLYQQQGRLDKLTVTS----QNLQLEN 92
P AP S G L TG L LL AT + + V S ++ +
Sbjct: 57 PAAPPFSSSSGVLGTGLCELDRLLQELNATQFNITDEIMSQFPSSKVASGEQKEDQSEDK 116
Query: 93 LRMKLPKPPKPVSKMRMATPLLMQA-LPMGALPQGPMQNATKYGNMTEDHVMHLLQNADP 151
R LP P P AT ++ M +L +QN T+ V+ P
Sbjct: 117 KRPSLPSSPSPGLPKASATSATLELDRLMASLSDFRVQNHLPASGPTQPPVVSSTNEGSP 176
Query: 152 LKVYPPLKGSFPENLRHLKNTM 173
P KGS L L++ +
Sbjct: 177 SPPEPTGKGSLDTMLGLLQSDL 198
>gi|23943866 family with sequence similarity 5, member B [Homo
sapiens]
Length = 783
Score = 28.1 bits (61), Expect = 6.7
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 156 PPLKGSFPENLR-------HLKNTMETID--WKVFESWMHHWLLFEMSRHSLEQKPTDAP 206
P +GSFP+ R +N T+ WK F +H +L + SL+ +
Sbjct: 604 PVNEGSFPDWERTNVDAAAQCQNWTITLGNRWKTFFETVHVYLRSRIK--SLDDSSNETI 661
Query: 207 PKESLELEDPSSGLGVTK 224
E LE+ DPS LG K
Sbjct: 662 YYEPLEMTDPSKNLGYMK 679
>gi|55749531 splicing factor 3B subunit 2 [Homo sapiens]
Length = 895
Score = 27.7 bits (60), Expect = 8.7
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 71 LYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPMGALPQGPM 128
L +QQ R L + ++ + +P+PP+ + ++ + TPL P A P GP+
Sbjct: 177 LLEQQKRAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPL----GPRVAAPVGPV 230
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,339,498
Number of Sequences: 37866
Number of extensions: 473062
Number of successful extensions: 1516
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1507
Number of HSP's gapped (non-prelim): 19
length of query: 232
length of database: 18,247,518
effective HSP length: 99
effective length of query: 133
effective length of database: 14,498,784
effective search space: 1928338272
effective search space used: 1928338272
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.