Guide to the Human Genome
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Search of human proteins with 239749323

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239749323 PREDICTED: similar to hCG1797215 [Homo sapiens]
         (93 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239749323 PREDICTED: similar to hCG1797215 [Homo sapiens]          194   1e-50
gi|239754799 PREDICTED: similar to hCG1797215 [Homo sapiens]          193   3e-50
gi|239743413 PREDICTED: hypothetical protein XP_002342849 [Homo ...   193   3e-50
gi|239509120 PREDICTED: similar to hCG1797215 [Homo sapiens]          193   3e-50
gi|224028271 choroideremia isoform b [Homo sapiens]                    30   0.42 
gi|9966761 choroideremia isoform a [Homo sapiens]                      30   0.42 
gi|229577180 MPN domain containing isoform 2 [Homo sapiens]            27   3.5  
gi|31542699 MPN domain containing isoform 1 [Homo sapiens]             27   3.5  
gi|4505749 phosphofructokinase, muscle [Homo sapiens]                  27   4.6  
gi|216547801 SH2 domain containing 3C isoform e [Homo sapiens]         27   4.6  
gi|216547790 SH2 domain containing 3C isoform d [Homo sapiens]         27   4.6  
gi|216547779 SH2 domain containing 3C isoform c [Homo sapiens]         27   4.6  
gi|216547769 SH2 domain containing 3C isoform c [Homo sapiens]         27   4.6  
gi|216547763 SH2 domain containing 3C isoform b [Homo sapiens]         27   4.6  
gi|41281821 SH2 domain containing 3C isoform a [Homo sapiens]          27   4.6  
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s...    26   7.9  
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s...    26   7.9  
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s...    26   7.9  
gi|156627541 hypothetical protein LOC200726 [Homo sapiens]             26   7.9  

>gi|239749323 PREDICTED: similar to hCG1797215 [Homo sapiens]
          Length = 93

 Score =  194 bits (493), Expect = 1e-50
 Identities = 93/93 (100%), Positives = 93/93 (100%)

Query: 1  MDRGAVVGLDLRMTFNCQDLVTNRVSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF 60
          MDRGAVVGLDLRMTFNCQDLVTNRVSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF
Sbjct: 1  MDRGAVVGLDLRMTFNCQDLVTNRVSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF 60

Query: 61 DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR 93
          DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR
Sbjct: 61 DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR 93


>gi|239754799 PREDICTED: similar to hCG1797215 [Homo sapiens]
          Length = 93

 Score =  193 bits (490), Expect = 3e-50
 Identities = 92/93 (98%), Positives = 93/93 (100%)

Query: 1  MDRGAVVGLDLRMTFNCQDLVTNRVSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF 60
          MDRGAVVGLDLRMTFNCQDLVTNR+SGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF
Sbjct: 1  MDRGAVVGLDLRMTFNCQDLVTNRMSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF 60

Query: 61 DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR 93
          DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR
Sbjct: 61 DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR 93


>gi|239743413 PREDICTED: hypothetical protein XP_002342849 [Homo
          sapiens]
          Length = 93

 Score =  193 bits (490), Expect = 3e-50
 Identities = 92/93 (98%), Positives = 93/93 (100%)

Query: 1  MDRGAVVGLDLRMTFNCQDLVTNRVSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF 60
          MDRGAVVGLDLRMTFNCQDLVTNR+SGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF
Sbjct: 1  MDRGAVVGLDLRMTFNCQDLVTNRMSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF 60

Query: 61 DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR 93
          DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR
Sbjct: 61 DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR 93


>gi|239509120 PREDICTED: similar to hCG1797215 [Homo sapiens]
          Length = 93

 Score =  193 bits (490), Expect = 3e-50
 Identities = 92/93 (98%), Positives = 93/93 (100%)

Query: 1  MDRGAVVGLDLRMTFNCQDLVTNRVSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF 60
          MDRGAVVGLDLRMTFNCQDLVTNR+SGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF
Sbjct: 1  MDRGAVVGLDLRMTFNCQDLVTNRMSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLF 60

Query: 61 DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR 93
          DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR
Sbjct: 61 DGQQNELLRKQEREDIISDLRQRRPIWKEEIHR 93


>gi|224028271 choroideremia isoform b [Homo sapiens]
          Length = 110

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 53 GSWGKGLFDGQQNELLRKQEREDIISDLRQRRPIWKEEI 91
          G+W    F G  + L   QE  DI+SD     P+W+++I
Sbjct: 45 GNWASFSFSGLLSWLKEYQENSDIVSD----SPVWQDQI 79


>gi|9966761 choroideremia isoform a [Homo sapiens]
          Length = 653

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 53 GSWGKGLFDGQQNELLRKQEREDIISDLRQRRPIWKEEI 91
          G+W    F G  + L   QE  DI+SD     P+W+++I
Sbjct: 45 GNWASFSFSGLLSWLKEYQENSDIVSD----SPVWQDQI 79


>gi|229577180 MPN domain containing isoform 2 [Homo sapiens]
          Length = 451

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 4/32 (12%)

Query: 61  DGQQNELLRKQEREDIISDL----RQRRPIWK 88
           +G++ ELL ++E ED+++ +    + RRP+ K
Sbjct: 182 EGEEEELLMEEEEEDVLAGVSAEDKSRRPLGK 213


>gi|31542699 MPN domain containing isoform 1 [Homo sapiens]
          Length = 471

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 4/32 (12%)

Query: 61  DGQQNELLRKQEREDIISDL----RQRRPIWK 88
           +G++ ELL ++E ED+++ +    + RRP+ K
Sbjct: 182 EGEEEELLMEEEEEDVLAGVSAEDKSRRPLGK 213


>gi|4505749 phosphofructokinase, muscle [Homo sapiens]
          Length = 780

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 7   VGLDLRMTFNCQ--DLVTNRVSGTERKAQVGKTQGFQCGRLLHSAG 50
           VG D  +   C   D +    +GT+R+  + +T G  CG L   AG
Sbjct: 540 VGADTALNTICTTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAG 585


>gi|216547801 SH2 domain containing 3C isoform e [Homo sapiens]
          Length = 700

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 26  SGTERKAQVGKTQGFQCGRLLHSAGPQGSWGK 57
           + TE  +Q  ++ G +   L  +  P+G WGK
Sbjct: 349 AATETSSQQARSYGERLKELSENGAPEGDWGK 380


>gi|216547790 SH2 domain containing 3C isoform d [Homo sapiens]
          Length = 702

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 26  SGTERKAQVGKTQGFQCGRLLHSAGPQGSWGK 57
           + TE  +Q  ++ G +   L  +  P+G WGK
Sbjct: 351 AATETSSQQARSYGERLKELSENGAPEGDWGK 382


>gi|216547779 SH2 domain containing 3C isoform c [Homo sapiens]
          Length = 506

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 26  SGTERKAQVGKTQGFQCGRLLHSAGPQGSWGK 57
           + TE  +Q  ++ G +   L  +  P+G WGK
Sbjct: 155 AATETSSQQARSYGERLKELSENGAPEGDWGK 186


>gi|216547769 SH2 domain containing 3C isoform c [Homo sapiens]
          Length = 506

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 26  SGTERKAQVGKTQGFQCGRLLHSAGPQGSWGK 57
           + TE  +Q  ++ G +   L  +  P+G WGK
Sbjct: 155 AATETSSQQARSYGERLKELSENGAPEGDWGK 186


>gi|216547763 SH2 domain containing 3C isoform b [Homo sapiens]
          Length = 703

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 26  SGTERKAQVGKTQGFQCGRLLHSAGPQGSWGK 57
           + TE  +Q  ++ G +   L  +  P+G WGK
Sbjct: 352 AATETSSQQARSYGERLKELSENGAPEGDWGK 383


>gi|41281821 SH2 domain containing 3C isoform a [Homo sapiens]
          Length = 860

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 26  SGTERKAQVGKTQGFQCGRLLHSAGPQGSWGK 57
           + TE  +Q  ++ G +   L  +  P+G WGK
Sbjct: 509 AATETSSQQARSYGERLKELSENGAPEGDWGK 540


>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
           sapiens]
          Length = 493

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)

Query: 66  ELLRK--QEREDIISDLRQRRPIWKEEI 91
           E+LR+  QE E++ +D+R+ +  WK +I
Sbjct: 147 EMLRQKQQEAEELEADIREEKASWKTQI 174


>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
           sapiens]
          Length = 326

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)

Query: 66  ELLRK--QEREDIISDLRQRRPIWKEEI 91
           E+LR+  QE E++ +D+R+ +  WK +I
Sbjct: 147 EMLRQKQQEAEELEADIREEKASWKTQI 174


>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
           sapiens]
          Length = 347

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)

Query: 66  ELLRK--QEREDIISDLRQRRPIWKEEI 91
           E+LR+  QE E++ +D+R+ +  WK +I
Sbjct: 147 EMLRQKQQEAEELEADIREEKASWKTQI 174


>gi|156627541 hypothetical protein LOC200726 [Homo sapiens]
          Length = 181

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 19  DLVTNRVSGTERKAQVGKTQGFQCGRLLHSAGPQGSWGKGLFDGQQNELLRKQEREDIIS 78
           D V +R  G  R+  VG+ +     +  H+   QG++ + L   + + L +K+  ED+IS
Sbjct: 104 DCVLSRNHGLGRRQLVGEEEKISAAQPQHTRSKQGTYSQLL---RTSFLKKKELIEDLIS 160


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,680,452
Number of Sequences: 37866
Number of extensions: 145262
Number of successful extensions: 452
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 20
length of query: 93
length of database: 18,247,518
effective HSP length: 64
effective length of query: 29
effective length of database: 15,824,094
effective search space: 458898726
effective search space used: 458898726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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