Guide to the Human Genome
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Name: LOC100287210 Sequence: fasta or formatted (93aa) NCBI GI: 239743413
Description:

PREDICTED: hypothetical protein XP_002342849

Not currently referenced in the text

Other entries for this name:
alt mRNA {93aa} PREDICTED: similar to hCG1797215
alt prot {93aa} PREDICTED: similar to hCG1797215
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2          3           1
 C cysteine            2.2          2           1
 D aspartate           6.5          6           1
 E glutamate           6.5          6           2
 F phenylalanine       3.2          3           1
 G glycine            11.8         11           1
 H histidine           2.2          2           1
 I isoleucine          4.3          4           2
 K lysine              5.4          5           1
 L leucine             9.7          9           2
 M methionine          3.2          3           1
 N asparagine          3.2          3           1
 P proline             2.2          2           1
 Q glutamine           9.7          9           2
 R arginine           11.8         11           2
 S serine              4.3          4           1
 T threonine           4.3          4           1
 V valine              4.3          4           2
 W tryptophan          2.2          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342849 
LOC100293706          1.000   PREDICTED: similar to hCG1797215 
LOC100287210          1.000   PREDICTED: similar to hCG1797215 
LOC100287210          0.994   PREDICTED: similar to hCG1797215 
CHM                   0.030   choroideremia isoform b 
CHM                   0.030   choroideremia isoform a 
MPND                  0.012   MPN domain containing isoform 2 
MPND                  0.012   MPN domain containing isoform 1 
SH2D3C                0.012   SH2 domain containing 3C isoform e 
SH2D3C                0.012   SH2 domain containing 3C isoform d 
SH2D3C                0.012   SH2 domain containing 3C isoform c 
SH2D3C                0.012   SH2 domain containing 3C isoform c 
SH2D3C                0.012   SH2 domain containing 3C isoform b 
SH2D3C                0.012   SH2 domain containing 3C isoform a 
PFKM                  0.006   phosphofructokinase, muscle 
LOC200726             0.006   hypothetical protein LOC200726 
TRIM5                 0.006   tripartite motif protein TRIM5 isoform alpha 
TRIM5                 0.006   tripartite motif protein TRIM5 isoform delta 
TRIM5                 0.006   tripartite motif protein TRIM5 isoform gamma 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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