Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC200726 Sequence: fasta or formatted (181aa) NCBI GI: 156627541
Description:

hypothetical protein LOC200726

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9          7           2
 C cysteine            3.3          6           2
 D aspartate           4.4          8           1
 E glutamate           5.0          9           3
 F phenylalanine       4.4          8           2
 G glycine             6.6         12           2
 H histidine           3.3          6           1
 I isoleucine          5.0          9           1
 K lysine              6.1         11           3
 L leucine            12.7         23           3
 M methionine          2.8          5           1
 N asparagine          2.8          5           1
 P proline             3.3          6           1
 Q glutamine           5.0          9           1
 R arginine            6.1         11           2
 S serine             11.6         21           3
 T threonine           3.3          6           1
 V valine              6.1         11           1
 W tryptophan          2.8          5           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC200726 
SCN7A                 0.020   sodium channel, voltage-gated, type VII, alpha [Hom...
RGS22                 0.011   regulator of G-protein signaling 22 
MADD                  0.009   MAP-kinase activating death domain-containing prote...
MADD                  0.009   MAP-kinase activating death domain-containing prote...
MADD                  0.009   MAP-kinase activating death domain-containing prote...
MADD                  0.009   MAP-kinase activating death domain-containing prote...
MADD                  0.009   MAP-kinase activating death domain-containing prote...
MADD                  0.009   MAP-kinase activating death domain-containing prote...
MADD                  0.009   MAP-kinase activating death domain-containing prote...
MADD                  0.009   MAP-kinase activating death domain-containing prote...
LOC100128881          0.009   PREDICTED: hypothetical protein 
LOC100128881          0.009   PREDICTED: similar to predicted protein 
C20orf54              0.009   hypothetical protein LOC113278 
MADD                  0.009   MAP-kinase activating death domain-containing prote...
MADD                  0.009   MAP-kinase activating death domain-containing protei...
C16orf73              0.009   hypothetical protein LOC254528 
ZFHX2                 0.006   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.006   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.006   PREDICTED: zinc finger homeobox 2 
YLPM1                 0.006   YLP motif containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press