Guide to the Human Genome
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Search of human proteins with 239749039

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239749039 PREDICTED: hypothetical protein XP_002346890 [Homo
sapiens]
         (177 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239749039 PREDICTED: hypothetical protein XP_002346890 [Homo ...   378   e-105
gi|239508708 PREDICTED: similar to hCG1998993 [Homo sapiens]          378   e-105
gi|239743064 PREDICTED: hypothetical protein XP_002342749 [Homo ...   374   e-104
gi|239754483 PREDICTED: similar to FLJ00049 protein [Homo sapiens]    370   e-103
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]                36   0.020
gi|154816198 transcription elongation factor B polypeptide 3C-li...    34   0.058
gi|156938279 transcription elongation factor B polypeptide 3C [H...    34   0.058
gi|189181750 human immunodeficiency virus type I enhancer bindin...    33   0.099
gi|116089331 human immunodeficiency virus type I enhancer bindin...    33   0.099
gi|122939147 Rho GTPase activating protein 9 isoform 1 [Homo sap...    33   0.099
gi|122939151 Rho GTPase activating protein 9 isoform 2 [Homo sap...    33   0.099
gi|148833494 interferon regulatory factor 5 isoform d [Homo sapi...    33   0.13 
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho...    33   0.17 
gi|156416026 zinc finger protein 219 [Homo sapiens]                    32   0.29 
gi|156415998 zinc finger protein 219 [Homo sapiens]                    32   0.29 
gi|156415996 zinc finger protein 219 [Homo sapiens]                    32   0.29 
gi|238776840 patatin-like phospholipase domain containing 1 isof...    32   0.38 
gi|224589138 patatin-like phospholipase domain containing 1 isof...    32   0.38 
gi|224593249 patatin-like phospholipase domain containing 1 isof...    32   0.38 
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         32   0.38 
gi|40353729 Ras and Rab interactor 3 [Homo sapiens]                    31   0.49 
gi|93102405 hypothetical protein LOC84182 [Homo sapiens]               31   0.64 
gi|239746558 PREDICTED: hypothetical protein XP_002343788 [Homo ...    30   0.84 
gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo ...    30   1.1  
gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo ...    30   1.1  
gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo ...    30   1.1  
gi|20986488 YY1-associated protein isoform 2 [Homo sapiens]            30   1.1  
gi|20986490 YY1-associated protein isoform 3 [Homo sapiens]            30   1.1  
gi|124378039 SEC16 homolog A [Homo sapiens]                            30   1.4  
gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens]           30   1.4  

>gi|239749039 PREDICTED: hypothetical protein XP_002346890 [Homo
           sapiens]
          Length = 177

 Score =  378 bits (971), Expect = e-105
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
           MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS
Sbjct: 1   MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60

Query: 61  ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
           ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP
Sbjct: 61  ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120

Query: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
           VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF
Sbjct: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177


>gi|239508708 PREDICTED: similar to hCG1998993 [Homo sapiens]
          Length = 177

 Score =  378 bits (971), Expect = e-105
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
           MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS
Sbjct: 1   MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60

Query: 61  ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
           ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP
Sbjct: 61  ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120

Query: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
           VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF
Sbjct: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177


>gi|239743064 PREDICTED: hypothetical protein XP_002342749 [Homo
           sapiens]
          Length = 177

 Score =  374 bits (961), Expect = e-104
 Identities = 176/177 (99%), Positives = 176/177 (99%)

Query: 1   MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
           MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRS GDGSLVRLS
Sbjct: 1   MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSLGDGSLVRLS 60

Query: 61  ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
           ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP
Sbjct: 61  ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120

Query: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
           VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF
Sbjct: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177


>gi|239754483 PREDICTED: similar to FLJ00049 protein [Homo sapiens]
          Length = 177

 Score =  370 bits (951), Expect = e-103
 Identities = 175/177 (98%), Positives = 175/177 (98%)

Query: 1   MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60
           MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS
Sbjct: 1   MLRESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLS 60

Query: 61  ECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120
           ECWPDWQRGGERKN GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP
Sbjct: 61  ECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRP 120

Query: 121 VPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177
           VPQGSALRLCPGTPG AHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF
Sbjct: 121 VPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF 177


>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
          Length = 424

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 33/100 (33%), Positives = 36/100 (36%), Gaps = 29/100 (29%)

Query: 75  PGSEEKPLQPSAW--PGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPG 132
           PGS   P+ P     PGI P  P   +PP AA    P                      G
Sbjct: 240 PGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPS--------------------AG 279

Query: 133 TPGCAHVGASRS----LPAMRMRCPGTSLLQL---GPVGL 165
           TPG  H G   S     P   M  PG S +QL   GP GL
Sbjct: 280 TPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGL 319


>gi|154816198 transcription elongation factor B polypeptide 3C-like
           [Homo sapiens]
          Length = 546

 Score = 34.3 bits (77), Expect = 0.058
 Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 21/141 (14%)

Query: 21  PQGPREEQSKR------EERVEPYVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKN 74
           PQ P E  S++      +ER + +   +   +A RSP            P+ +R   R  
Sbjct: 87  PQDPEESASRQRFGEALQEREKAWGFPE-NATAPRSPSHS---------PEHRRTARRTP 136

Query: 75  PGSEEK-PLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGT 133
           PG +   P  PS  P     +P+        ++  P      T P P+P+G    +    
Sbjct: 137 PGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPT----RTAPLPMPEGPEPAVPGEQ 192

Query: 134 PGCAHVGASRSLPAMRMRCPG 154
           PG  H  A++  P +   C G
Sbjct: 193 PGRGHAHAAQGGPLLGQGCQG 213


>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
           sapiens]
          Length = 546

 Score = 34.3 bits (77), Expect = 0.058
 Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 21/141 (14%)

Query: 21  PQGPREEQSKR------EERVEPYVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKN 74
           PQ P E  S++      +ER + +   +   +A RSP            P+ +R   R  
Sbjct: 87  PQDPEESASRQRFGEALQEREKAWGFPE-NATAPRSPSHS---------PEHRRTARRTP 136

Query: 75  PGSEEK-PLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGT 133
           PG +   P  PS  P     +P+        ++  P      T P P+P+G    +    
Sbjct: 137 PGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPT----RTAPLPMPEGPEPAVPGEQ 192

Query: 134 PGCAHVGASRSLPAMRMRCPG 154
           PG  H  A++  P +   C G
Sbjct: 193 PGRGHAHAAQGGPLLGQGCQG 213


>gi|189181750 human immunodeficiency virus type I enhancer binding
            protein 3 b [Homo sapiens]
          Length = 2405

 Score = 33.5 bits (75), Expect = 0.099
 Identities = 32/96 (33%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 75   PGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTP 134
            P S  +P  PS   G  P  P         N + P+ C     P   PQ SA    P  P
Sbjct: 1962 PVSPRRPWSPSKEAGSRP--PLARKHSLTKNDSSPQRC----SPAREPQASA----PSPP 2011

Query: 135  GCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSR 170
            G  HV   R + A+     G+  LQL P+ LC L R
Sbjct: 2012 GL-HVDPGRGMGALPC---GSPRLQLSPLTLCPLGR 2043



 Score = 29.6 bits (65), Expect = 1.4
 Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 21   PQGPREEQSKREERVEPYVACDIGLSAS----RSPGDGSLVRLSECWPDWQRG--GERKN 74
            PQG R  QS       P    +   SA+    RS   G L   S  +P   R   GE + 
Sbjct: 2318 PQGRRAAQSWSPRLESPRAPTNPEPSATPPLDRSSSVGCLAEASARFPARTRNLSGEPRT 2377

Query: 75   PGSEEKPLQPSAWPGINPLQPQEVVPPQA 103
                 KP   S  P  +P QP++ VPP A
Sbjct: 2378 RQDSPKP-SGSGEPRAHPHQPEDRVPPNA 2405


>gi|116089331 human immunodeficiency virus type I enhancer binding
            protein 3 [Homo sapiens]
          Length = 2406

 Score = 33.5 bits (75), Expect = 0.099
 Identities = 32/96 (33%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 75   PGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTP 134
            P S  +P  PS   G  P  P         N + P+ C     P   PQ SA    P  P
Sbjct: 1962 PVSPRRPWSPSKEAGSRP--PLARKHSLTKNDSSPQRC----SPAREPQASA----PSPP 2011

Query: 135  GCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSR 170
            G  HV   R + A+     G+  LQL P+ LC L R
Sbjct: 2012 GL-HVDPGRGMGALPC---GSPRLQLSPLTLCPLGR 2043



 Score = 29.6 bits (65), Expect = 1.4
 Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 21   PQGPREEQSKREERVEPYVACDIGLSAS----RSPGDGSLVRLSECWPDWQRG--GERKN 74
            PQG R  QS       P    +   SA+    RS   G L   S  +P   R   GE + 
Sbjct: 2319 PQGRRAAQSWSPRLESPRAPTNPEPSATPPLDRSSSVGCLAEASARFPARTRNLSGEPRT 2378

Query: 75   PGSEEKPLQPSAWPGINPLQPQEVVPPQA 103
                 KP   S  P  +P QP++ VPP A
Sbjct: 2379 RQDSPKP-SGSGEPRAHPHQPEDRVPPNA 2406


>gi|122939147 Rho GTPase activating protein 9 isoform 1 [Homo
           sapiens]
          Length = 731

 Score = 33.5 bits (75), Expect = 0.099
 Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 9/125 (7%)

Query: 38  YVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQE 97
           Y   D G   S + GD  L+ L +   DW      + P +      P+A+        +E
Sbjct: 35  YTGAD-GQQVSLAEGDRFLL-LRKTNSDWWLARRLEAPSTSRPIFVPAAY------MIEE 86

Query: 98  VVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSL 157
            +P Q+    +P   LW   P+ +  GS   L    P  A   + +  P  R  C   S 
Sbjct: 87  SIPSQSPTTVIPGQLLWTPGPK-LFHGSLEELSQALPSRAQASSEQPPPLPRKMCRSVST 145

Query: 158 LQLGP 162
             L P
Sbjct: 146 DNLSP 150


>gi|122939151 Rho GTPase activating protein 9 isoform 2 [Homo
           sapiens]
          Length = 640

 Score = 33.5 bits (75), Expect = 0.099
 Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 9/125 (7%)

Query: 38  YVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQE 97
           Y   D G   S + GD  L+ L +   DW      + P +      P+A+        +E
Sbjct: 35  YTGAD-GQQVSLAEGDRFLL-LRKTNSDWWLARRLEAPSTSRPIFVPAAY------MIEE 86

Query: 98  VVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSL 157
            +P Q+    +P   LW   P+ +  GS   L    P  A   + +  P  R  C   S 
Sbjct: 87  SIPSQSPTTVIPGQLLWTPGPK-LFHGSLEELSQALPSRAQASSEQPPPLPRKMCRSVST 145

Query: 158 LQLGP 162
             L P
Sbjct: 146 DNLSP 150


>gi|148833494 interferon regulatory factor 5 isoform d [Homo
           sapiens]
          Length = 514

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 24/103 (23%), Positives = 40/103 (38%)

Query: 20  FPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLSECWPDWQRGGERKNPGSEE 79
           F  G  EE+ +  +R+ P ++    + +       SL++    WP   +    + P  + 
Sbjct: 138 FGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTPYSLLKEDVKWPPTLQPPTLRPPTLQP 197

Query: 80  KPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVP 122
             LQP    G     P  + PP        EL   + EP P+P
Sbjct: 198 PTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP 240


>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
           sapiens]
          Length = 1560

 Score = 32.7 bits (73), Expect = 0.17
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 75  PGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTE-PRPVPQGSALRLCP 131
           PG  + PL+P + P   PL P   +PP + + AV       +  P P P    L+  P
Sbjct: 855 PGPPQPPLRPQSQPPEGPLPPAPHLPPSSTSSAVASSSETSSRLPAPTPSDFQLQFPP 912



 Score = 26.9 bits (58), Expect = 9.3
 Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 81  PLQPSAWPGINPLQPQEVVPPQAANKA--VPELCLWMTEPRPVPQGSALRLCPGTP--GC 136
           P  P   PGI  +Q Q  VPP A+N A   P        P+  P    L   P  P    
Sbjct: 825 PQAPPTLPGIFVIQNQLGVPPPASNPAPTAPGPPQPPLRPQSQPPEGPLPPAPHLPPSST 884

Query: 137 AHVGASRSLPAMRMRCPGTSLLQL 160
           +   AS S  + R+  P  S  QL
Sbjct: 885 SSAVASSSETSSRLPAPTPSDFQL 908


>gi|156416026 zinc finger protein 219 [Homo sapiens]
          Length = 722

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 76  GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPG 135
           G+ E+PL  +A     P QPQ   PPQ   ++VP+      EP P P+    R    TP 
Sbjct: 213 GAPERPL--AATSAAPPPQPQPQPPPQPEPRSVPQ-----PEPEPEPE----REATPTPA 261

Query: 136 CAHVGASRSLPAMRMRCPGTSLLQ 159
            A      + P  R +  G S  Q
Sbjct: 262 PAAPEEPPAPPEFRCQVCGQSFTQ 285


>gi|156415998 zinc finger protein 219 [Homo sapiens]
          Length = 722

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 76  GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPG 135
           G+ E+PL  +A     P QPQ   PPQ   ++VP+      EP P P+    R    TP 
Sbjct: 213 GAPERPL--AATSAAPPPQPQPQPPPQPEPRSVPQ-----PEPEPEPE----REATPTPA 261

Query: 136 CAHVGASRSLPAMRMRCPGTSLLQ 159
            A      + P  R +  G S  Q
Sbjct: 262 PAAPEEPPAPPEFRCQVCGQSFTQ 285


>gi|156415996 zinc finger protein 219 [Homo sapiens]
          Length = 722

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 76  GSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPG 135
           G+ E+PL  +A     P QPQ   PPQ   ++VP+      EP P P+    R    TP 
Sbjct: 213 GAPERPL--AATSAAPPPQPQPQPPPQPEPRSVPQ-----PEPEPEPE----REATPTPA 261

Query: 136 CAHVGASRSLPAMRMRCPGTSLLQ 159
            A      + P  R +  G S  Q
Sbjct: 262 PAAPEEPPAPPEFRCQVCGQSFTQ 285


>gi|238776840 patatin-like phospholipase domain containing 1 isoform
           3 [Homo sapiens]
          Length = 532

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 14/99 (14%)

Query: 73  KNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWM---TEPRPVPQGSALRL 129
           K P S      P+  PG++PL PQ+ V P  +    P   L     T PRP        L
Sbjct: 379 KPPSSTPGSSLPTPPPGLSPLSPQQQVQPSGS----PARSLHSQAPTSPRP-------SL 427

Query: 130 CPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLL 168
            P T G        SL A   + P   L Q  P  + LL
Sbjct: 428 GPSTVGAPQTLPRSSLSAFPAQPPVEELGQEQPQAVALL 466


>gi|224589138 patatin-like phospholipase domain containing 1 isoform
           2 [Homo sapiens]
          Length = 446

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 14/99 (14%)

Query: 73  KNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWM---TEPRPVPQGSALRL 129
           K P S      P+  PG++PL PQ+ V P  +    P   L     T PRP        L
Sbjct: 293 KPPSSTPGSSLPTPPPGLSPLSPQQQVQPSGS----PARSLHSQAPTSPRP-------SL 341

Query: 130 CPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLL 168
            P T G        SL A   + P   L Q  P  + LL
Sbjct: 342 GPSTVGAPQTLPRSSLSAFPAQPPVEELGQEQPQAVALL 380


>gi|224593249 patatin-like phospholipase domain containing 1 isoform
           1 [Homo sapiens]
          Length = 437

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 14/99 (14%)

Query: 73  KNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWM---TEPRPVPQGSALRL 129
           K P S      P+  PG++PL PQ+ V P  +    P   L     T PRP        L
Sbjct: 284 KPPSSTPGSSLPTPPPGLSPLSPQQQVQPSGS----PARSLHSQAPTSPRP-------SL 332

Query: 130 CPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLL 168
            P T G        SL A   + P   L Q  P  + LL
Sbjct: 333 GPSTVGAPQTLPRSSLSAFPAQPPVEELGQEQPQAVALL 371


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 84   PSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPR-------PVPQGSALRLCPGTPGC 136
            PSA P   P Q   + P  +A++A+      M  P+       P P  + L +   +PG 
Sbjct: 1560 PSA-PNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPGA 1618

Query: 137  AHVGASRSLPAMRM---RCPGTSLLQLGPV 163
            A V AS   P   M     PGTSL    PV
Sbjct: 1619 APVLASSQTPVPVMAPSSTPGTSLASASPV 1648


>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
          Length = 985

 Score = 31.2 bits (69), Expect = 0.49
 Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 74  NPGSEEKPLQPSAWPGINPLQP-QEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPG 132
           +P S   P +P   P + PLQP     PP     A    C   T P PVP        PG
Sbjct: 270 SPTSRWAPRRPPPPPPVLPLQPCSPAQPPVLPALAPAPACPLPTSP-PVPAPHVTPHAPG 328

Query: 133 TPGCAHVGASRSLPAMRMRCPGTSL 157
            P   H      +   R+ CP   L
Sbjct: 329 PPD--HPNQPPMMTCERLPCPTAGL 351


>gi|93102405 hypothetical protein LOC84182 [Homo sapiens]
          Length = 757

 Score = 30.8 bits (68), Expect = 0.64
 Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 16  LTREFPQGPREEQSKREERVEPYVAC---DIGLSASRSPGDGSLVRLSECWPDWQRGGER 72
           L R  P     +  +   +V     C   DI  S++ SP   SL +LSE   + Q+    
Sbjct: 229 LRRSSPSSSSTQPQEESRKVPELFVCTQQDILASSNSSPSRTSLGQLSELTVERQKTTAS 288

Query: 73  KNPGSEEKPLQPSAWPGINPLQPQEVVP 100
             P    K L P  W    P  P E  P
Sbjct: 289 SPPHLPSKRLPP--WDRARPRDPSEDTP 314


>gi|239746558 PREDICTED: hypothetical protein XP_002343788 [Homo
           sapiens]
          Length = 616

 Score = 30.4 bits (67), Expect = 0.84
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 105 NKAVPELCLWMTEPRPVPQGSALRL----CPGTPGCAHVGASRSLPAMRMRCPG 154
           N  +P   LW    RPVP  SAL L     PG  G +  G S        +CPG
Sbjct: 27  NFLLPVRRLWPCSRRPVPSSSALPLLHAFAPGPQGRSPAGISTEPVPPPPQCPG 80


>gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo
           sapiens]
          Length = 274

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 20/74 (27%)

Query: 93  LQPQEVVPPQAANKAVP---------ELCLWM-----TEPRPVPQGSA-LRLCPGTPGCA 137
           L+PQE  PP AA +A P          LCL       +  RP+PQ  A +RLC  T   A
Sbjct: 127 LEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCIPT---A 183

Query: 138 HVGASRSLPAMRMR 151
           H G  + +P  R+R
Sbjct: 184 HKG--QRMPLYRIR 195


>gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo
           sapiens]
          Length = 274

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 20/74 (27%)

Query: 93  LQPQEVVPPQAANKAVP---------ELCLWM-----TEPRPVPQGSA-LRLCPGTPGCA 137
           L+PQE  PP AA +A P          LCL       +  RP+PQ  A +RLC  T   A
Sbjct: 127 LEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCIPT---A 183

Query: 138 HVGASRSLPAMRMR 151
           H G  + +P  R+R
Sbjct: 184 HKG--QRMPLYRIR 195


>gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo
           sapiens]
          Length = 274

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 20/74 (27%)

Query: 93  LQPQEVVPPQAANKAVP---------ELCLWM-----TEPRPVPQGSA-LRLCPGTPGCA 137
           L+PQE  PP AA +A P          LCL       +  RP+PQ  A +RLC  T   A
Sbjct: 127 LEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCIPT---A 183

Query: 138 HVGASRSLPAMRMR 151
           H G  + +P  R+R
Sbjct: 184 HKG--QRMPLYRIR 195


>gi|20986488 YY1-associated protein isoform 2 [Homo sapiens]
          Length = 796

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 54  GSLVRLSECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCL 113
           G +++L      + +   R+   S  KPL     P + P       P Q+ +   P   +
Sbjct: 433 GVVLKLKPVADRFPKKAWRQKRSSVLKPLLIQPSPSLQPSFNPGKTPAQSTHSEAPPSKM 492

Query: 114 WMTEPRPVPQGSALRLCPGTP-----GCAHVGASRSLPAM 148
            +  P P+   + L+  PG P     G     +  +LPAM
Sbjct: 493 VLRIPHPIQPATVLQTVPGVPPLGVSGGESFESPAALPAM 532


>gi|20986490 YY1-associated protein isoform 3 [Homo sapiens]
          Length = 750

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 54  GSLVRLSECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCL 113
           G +++L      + +   R+   S  KPL     P + P       P Q+ +   P   +
Sbjct: 387 GVVLKLKPVADRFPKKAWRQKRSSVLKPLLIQPSPSLQPSFNPGKTPAQSTHSEAPPSKM 446

Query: 114 WMTEPRPVPQGSALRLCPGTP-----GCAHVGASRSLPAM 148
            +  P P+   + L+  PG P     G     +  +LPAM
Sbjct: 447 VLRIPHPIQPATVLQTVPGVPPLGVSGGESFESPAALPAM 486


>gi|124378039 SEC16 homolog A [Homo sapiens]
          Length = 2357

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 88   PGINPLQPQEVVPPQ--AANKAVPELCLW-MTEPRPVP-QGSALRLCPGTPGCAHVGASR 143
            PG+   Q QE+VPPQ  A+   +P+     ++ P  +P QG A            V A +
Sbjct: 1052 PGLERAQ-QELVPPQQQASPPQLPKAMFSELSNPESLPAQGQAQNSAQSPASLVLVDAGQ 1110

Query: 144  SLPAMRMRCPGTSLLQLGPVGLCLLSRAPW 173
             LP    +    SL+  G     + S  PW
Sbjct: 1111 QLPPRPPQSSSVSLVSSGSGQAAVPSEQPW 1140


>gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens]
          Length = 196

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 25/151 (16%)

Query: 3   RESLDLGQQGRLGLTREFPQGPREEQSKREERVEPYVACDIGLSASRSPGDGSLVRLSEC 62
           R+ L  G+ G  GL     +GP   +  + + ++   + +   S SR+   G        
Sbjct: 53  RKGLRRGEPGSRGLG----EGPAAARRPQVQSIDTTPSGEGAPSFSRAQRPG-------- 100

Query: 63  WPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAANKAVPELCLWMTEPRPVP 122
                R G   +  S+  P + +AW  + P + Q+ +  +A  +A  E        R +P
Sbjct: 101 -----RSGPSPSLASDPAPGRGAAWGSLRPGKRQQALESEAGGRASREARAAEVRER-IP 154

Query: 123 QGSALRLCPG-----TPGCAHVGASRSLPAM 148
            G +   CPG     TP CA   +  + P++
Sbjct: 155 GGGS--WCPGRRDWLTPPCAGSSSQLTEPSV 183


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.137    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,227,997
Number of Sequences: 37866
Number of extensions: 544460
Number of successful extensions: 1881
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 1810
Number of HSP's gapped (non-prelim): 159
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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